Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002245.1

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

69817 .. 72218

Gene Structure 2402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002245.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgagtgcttctttggcttctgttgttgttttgggggttagaaaatggggaaaaagaatgaggtttttggaagagcattggttatctaccttcagggttgaattgccttcaatggggctttctttgccaccgtggtcgtccagtttgcaagccagaggaagcaagggtttcgccaaaacccaaaaggtcttcgtccccaaaaatcaaggccagaatcgtcccagaagccctaaatccccaaatcctactctctctacctctcttcggcaatcgtcgtcccaaccgtccaatgccgaagtttcaagtgctgctgcttctgcgccgccggagagtagtagtagtagtaatagggttcagatgggagagagaggtgagtgggtgtcgaccaagggaaattttgtgaattacttgccccaagatgaggcagttgccgctggcctcggcgccgacgaaggtggattggacgccgtggagtctcagagagtcgtcgattttctcaatagagagctttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

171

Amino Acids

18.43

Weight (kDa)

9.89

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	383
AciI	CCGC	2 cut(s)	323, 432
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	76
AcyI	GRCGYC	2 cut(s)	444, 465
AfiI	CCNNNNNNNGG	3 cut(s)	113, 264, 421
AgsI	TTSAA	3 cut(s)	101, 111, 303
AluBI	AGCT	1 cut(s)	508
AluI	AGCT	1 cut(s)	508
Alw26I	GTCTC	1 cut(s)	480
AoxI	GGCC	2 cut(s)	208, 436
ApeKI	GCWGC	2 cut(s)	308, 311
ApoI	RAATTY	1 cut(s)	394
AspLEI	GCGC	2 cut(s)	322, 446
AsuHPI	GGTGA	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	295, 298
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	452
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BcoDI	GTCTC	1 cut(s)	480
BfoI	RGCGCY	1 cut(s)	447
BisI	GCNGC	4 cut(s)	309, 312, 323, 432
BlsI	GCNGC	4 cut(s)	310, 313, 324, 433
BmiI	GGNNCC	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	181
BsaHI	GRCGYC	2 cut(s)	444, 465
BsaJI	CCNNGG	4 cut(s)	131, 387, 439, 468
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 264, 421
Bse1I	ACTGG	1 cut(s)	141
BseDI	CCNNGG	4 cut(s)	131, 387, 439, 468
BseLI	CCNNNNNNNGG	3 cut(s)	113, 264, 421
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	295, 298
BshFI	GGCC	2 cut(s)	210, 438
BshNI	GGYRCC	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	3 cut(s)	179, 204, 262
BslI	CCNNNNNNNGG	3 cut(s)	113, 264, 421
BsmAI	GTCTC	1 cut(s)	480
BsmFI	GGGAC	3 cut(s)	179, 204, 262
BsnI	GGCC	2 cut(s)	210, 438
BspACI	CCGC	2 cut(s)	323, 432
BspANI	GGCC	2 cut(s)	210, 438
BspCNI	CTCAG	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	445
BspQI	GCTCTTC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	4 cut(s)	131, 387, 439, 468
BssNI	GRCGYC	2 cut(s)	444, 465
BssT1I	CCWWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	132, 285
Bst6I	CTCTTC	2 cut(s)	66, 267
BstACI	GRCGYC	2 cut(s)	444, 465
BstC8I	GCNNGC	2 cut(s)	150, 436
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	2 cut(s)	131, 468
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	2 cut(s)	322, 446
BstMAI	GTCTC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 124, 317, 431
BstV1I	GCAGC	2 cut(s)	295, 298
BstV2I	GAAGAC	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	210, 438
BtgI	CCRYGG	2 cut(s)	131, 468
Cac8I	GCNNGC	2 cut(s)	150, 436
CfoI	GCGC	2 cut(s)	322, 446
CseI	GACGC	1 cut(s)	473
CviJI	RGCY	7 cut(s)	17, 118, 152, 210, 228, 438, 508
CviKI_1	RGCY	7 cut(s)	17, 118, 152, 210, 228, 438, 508
DdeI	CTNAG	1 cut(s)	477
DinI	GGCGCC	1 cut(s)	445
Eam1104I	CTCTTC	2 cut(s)	66, 267
EarI	CTCTTC	2 cut(s)	66, 267
Eco130I	CCWWGG	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	387
EgeI	GGCGCC	1 cut(s)	445
EheI	GGCGCC	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	387
FaqI	GGGAC	3 cut(s)	179, 204, 262
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	4 cut(s)	309, 312, 323, 432
Fsp4HI	GCNGC	4 cut(s)	309, 312, 323, 432
GlaI	GCGC	2 cut(s)	321, 445
GluI	GCNGC	4 cut(s)	309, 312, 323, 432
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	210, 438
HapII	CCGG	1 cut(s)	326
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	2 cut(s)	322, 446
Hin1I	GRCGYC	2 cut(s)	444, 465
Hin6I	GCGC	2 cut(s)	320, 444
HinP1I	GCGC	2 cut(s)	320, 444
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	3 cut(s)	214, 473, 483
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	2 cut(s)	357, 480
Hpy188III	TCNNGA	1 cut(s)	513
Hpy8I	GTNNAC	1 cut(s)	384
Hpy99I	CGWCG	3 cut(s)	277, 452, 491
HpyAV	CCTTC	3 cut(s)	100, 117, 446
HpyCH4III	ACNGT	2 cut(s)	132, 285
HpyCH4V	TGCA	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 124, 317, 431
HpyF3I	CTNAG	1 cut(s)	477
Hsp92I	GRCGYC	2 cut(s)	444, 465
HspAI	GCGC	2 cut(s)	320, 444
KasI	GGCGCC	1 cut(s)	443
LguI	GCTCTTC	1 cut(s)	66
LpnPI	CCDG	7 cut(s)	79, 154, 166, 224, 235, 339, 420
Lsp1109I	GCAGC	2 cut(s)	295, 298
MboII	GAAGA	3 cut(s)	83, 181, 254
MluCI	AATT	3 cut(s)	101, 394, 403
Mly113I	GGCGCC	1 cut(s)	444
MlyI	GAGTC	2 cut(s)	482, 492
MnlI	CCTC	6 cut(s)	54, 149, 268, 362, 415, 449
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	14, 124, 317, 431
NarI	GGCGCC	1 cut(s)	444
NlaIV	GGNNCC	1 cut(s)	445
NmeAIII	GCCGAG	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	2 cut(s)	281, 447
PfeI	GAWTC	1 cut(s)	214
PkrI	GCNGC	4 cut(s)	310, 313, 324, 433
PleI	GAGTC	2 cut(s)	481, 491
PluTI	GGCGCC	1 cut(s)	447
PpsI	GAGTC	2 cut(s)	481, 491
PspN4I	GGNNCC	1 cut(s)	445
SalI	GTCGAC	1 cut(s)	382
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	4 cut(s)	309, 312, 323, 432
SchI	GAGTC	2 cut(s)	482, 492
SetI	ASST	7 cut(s)	65, 92, 189, 260, 373, 457, 510
SfoI	GGCGCC	1 cut(s)	445
Sse9I	AATT	3 cut(s)	101, 394, 403
SsiI	CCGC	2 cut(s)	323, 432
SspDI	GGCGCC	1 cut(s)	443
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	2 cut(s)	132, 285
TaqI	TCGA	2 cut(s)	383, 489
TasI	AATT	3 cut(s)	101, 394, 403
TauI	GCSGC	2 cut(s)	325, 434
TfiI	GAWTC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	308, 311
XapI	RAATTY	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.