Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

17160692 .. 17161399

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032632

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTGAAGCTTCAAGCGCCGCTGGAGAGTAGTAGTAGTAGTAGGGTTCGGATGGGAGAGAGAGGCGAGTGGGTGTCGACCAAGGGAAATTTCGTGAATTACTTTCCCCAAGATGAGGCGGTTGCCACTGGCCTCTGCGCCGACGAAGGTGAATTGGACTCCTTGGAGTCTCAAAGAGTCGTCGATCTTCTCAATAGAGAGCTTTCTCAACTGCTCAAGCTAAACCCTAAGGAATTTTGGAAACAAGCCAAGGACATGGTGGCAGGGGTCATTGTAGGGGAATTAGAACTAAGCCGCTGTGTTTTTATGGTATTGTATCAAATATCTTCTAACAGGGATCCTGGTGCTCGGCCGCTCGGGCTGCTGAAAGTCTCAGTCCGAAAGACCATGAAGGCATGTCTCTCGTCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

138

Amino Acids

15.24

Weight (kDa)

7.67

Isoelectric Point (pI)

28.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	77
AciI	CCGC	4 cut(s)	20, 119, 295, 353
AclWI	GGATC	2 cut(s)	332, 345
AcoI	YGGCCR	1 cut(s)	350
AcsI	RAATTY	2 cut(s)	88, 233
AcuI	CTGAAG	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	3 cut(s)	10, 202, 220
AluI	AGCT	3 cut(s)	10, 202, 220
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	3 cut(s)	174, 376, 404
AlwI	GGATC	2 cut(s)	332, 345
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	130, 350
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	2 cut(s)	88, 233
AspLEI	GCGC	2 cut(s)	19, 140
AsuHPI	GGTGA	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	356
AxyI	CCTNAGG	1 cut(s)	228
BamHI	GGATCC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	46
BcgI	CGANNNNNNTGC	1 cut(s)	384
BciT130I	CCWGG	1 cut(s)	342
BcoDI	GTCTC	3 cut(s)	174, 376, 404
BfoI	RGCGCY	1 cut(s)	20
BglI	GCCNNNNNGGC	1 cut(s)	358
BisI	GCNGC	4 cut(s)	20, 295, 353, 362
BlsI	GCNGC	4 cut(s)	21, 296, 354, 363
Bme1390I	CCNGG	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	81, 162, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	133
Bse21I	CCTNAGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	81, 162, 249
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	133
BseX3I	CGGCCG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	348
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	2 cut(s)	132, 352
BsiEI	CGRYCG	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	3 cut(s)	174, 376, 404
BsnI	GGCC	2 cut(s)	132, 352
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	184, 337
BspACI	CCGC	4 cut(s)	20, 119, 295, 353
BspANI	GGCC	2 cut(s)	132, 352
BspCNI	CTCAG	1 cut(s)	386
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	2 cut(s)	332, 345
BsrBI	CCGCTC	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	81, 162, 249
BssMI	GATC	2 cut(s)	184, 337
BssT1I	CCWWGG	3 cut(s)	81, 162, 249
Bst2UI	CCWGG	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	228, 290, 373
BstF5I	GGATG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	19, 140
BstKTI	GATC	2 cut(s)	187, 340
BstMAI	GTCTC	3 cut(s)	174, 376, 404
BstMBI	GATC	2 cut(s)	184, 337
BstMCI	CGRYCG	1 cut(s)	353
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 358, 361
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	337
BstZI	CGGCCG	1 cut(s)	350
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	132, 352
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	126
CfoI	GCGC	2 cut(s)	19, 140
CviAII	CATG	3 cut(s)	256, 388, 396
CviJI	RGCY	8 cut(s)	10, 132, 202, 220, 248, 294, 352, 361
CviKI_1	RGCY	8 cut(s)	10, 132, 202, 220, 248, 294, 352, 361
DdeI	CTNAG	3 cut(s)	228, 290, 373
DpnI	GATC	2 cut(s)	186, 339
DpnII	GATC	2 cut(s)	184, 337
EaeI	YGGCCR	1 cut(s)	350
EagI	CGGCCG	1 cut(s)	350
EclXI	CGGCCG	1 cut(s)	350
Eco130I	CCWWGG	3 cut(s)	81, 162, 249
Eco52I	CGGCCG	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	3 cut(s)	81, 162, 249
ErhI	CCWWGG	3 cut(s)	81, 162, 249
FaeI	CATG	3 cut(s)	259, 391, 399
FaiI	YATR	4 cut(s)	257, 308, 389, 397
FatI	CATG	3 cut(s)	255, 387, 395
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	4 cut(s)	20, 295, 353, 362
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	4 cut(s)	20, 295, 353, 362
GlaI	GCGC	2 cut(s)	18, 139
GluI	GCNGC	4 cut(s)	20, 295, 353, 362
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	132, 352
HhaI	GCGC	2 cut(s)	19, 140
Hin1II	CATG	3 cut(s)	259, 391, 399
Hin6I	GCGC	2 cut(s)	17, 138
HinP1I	GCGC	2 cut(s)	17, 138
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	158, 167, 177
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	2 cut(s)	51, 380
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	2 cut(s)	146, 185
HpyAV	CCTTC	2 cut(s)	140, 385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 358, 361
HpyF3I	CTNAG	3 cut(s)	228, 290, 373
Hsp92II	CATG	3 cut(s)	259, 391, 399
HspAI	GCGC	2 cut(s)	17, 138
Kzo9I	GATC	2 cut(s)	184, 337
LpnPI	CCDG	6 cut(s)	8, 114, 249, 319, 327, 354
Lsp1109I	GCAGC	1 cut(s)	348
MalI	GATC	2 cut(s)	186, 339
MbiI	CCGCTC	1 cut(s)	355
MboI	GATC	2 cut(s)	184, 337
MboII	GAAGA	2 cut(s)	179, 318
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	5 cut(s)	88, 97, 152, 233, 281
MlyI	GAGTC	3 cut(s)	152, 176, 186
MnlI	CCTC	3 cut(s)	56, 109, 143
MseI	TTAA	1 cut(s)	412
MspA1I	CMGCKG	2 cut(s)	22, 297
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	16, 358, 361
NdeII	GATC	2 cut(s)	184, 337
NlaIII	CATG	3 cut(s)	259, 391, 399
NlaIV	GGNNCC	1 cut(s)	339
NmeAIII	GCCGAG	1 cut(s)	328
NspI	RCATGY	1 cut(s)	399
PkrI	GCNGC	4 cut(s)	21, 296, 354, 363
PleI	GAGTC	3 cut(s)	152, 175, 185
PpsI	GAGTC	3 cut(s)	152, 175, 185
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	337
SalI	GTCGAC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	412
SatI	GCNGC	4 cut(s)	20, 295, 353, 362
Sau3AI	GATC	2 cut(s)	184, 337
SchI	GAGTC	3 cut(s)	152, 176, 186
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	4 cut(s)	12, 151, 204, 222
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	88, 97, 152, 233, 281
SsiI	CCGC	4 cut(s)	20, 119, 295, 353
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	3 cut(s)	81, 162, 249
TaqI	TCGA	2 cut(s)	77, 183
TasI	AATT	5 cut(s)	88, 97, 152, 233, 281
TauI	GCSGC	3 cut(s)	22, 297, 355
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	404
TspRI	CASTG	1 cut(s)	133
XapI	RAATTY	2 cut(s)	88, 233
XceI	RCATGY	1 cut(s)	399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.