Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000108.1

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Forward (+)

68 .. 484

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000108.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgtcgagtcaccgaaaccctcaaggcaacaccaataggcaagccagaggaagcaagggtttcgccaaaacccaaaaggtcttcgtccccaaaaaccaaggccagaatcgtcccagaagccctaaatccccaaatcctactctctctgcctctcttcggcaatcgtcgtcccaaccgtccaatgccgaagtttcaagtgctgctgcttctgcgccaccggagagtagtagtagtagtagtagtagtaatagggttcagatgggagagagaggtgagtgggtgtcgaccaagggaaatttcgtgaattacttgccccaagatgaggcagttgtcgctggcctcggcgccaacgaaggtggattggacgtcgtggagtctcagagagtcgtcgattttctcaatagagagctttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

138

Amino Acids

14.66

Weight (kDa)

10.09

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	295
AcyI	GRCGYC	2 cut(s)	345, 366
AfiI	CCNNNNNNNGG	2 cut(s)	156, 322
AgsI	TTSAA	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	1 cut(s)	409
AluI	AGCT	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	381
AoxI	GGCC	2 cut(s)	100, 337
ApeKI	GCWGC	2 cut(s)	200, 203
ApoI	RAATTY	1 cut(s)	295
AspLEI	GCGC	2 cut(s)	214, 347
AsuHPI	GGTGA	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	187, 190
BccI	CCATC	1 cut(s)	253
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcoDI	GTCTC	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	348
BisI	GCNGC	2 cut(s)	201, 204
BlsI	GCNGC	2 cut(s)	202, 205
BmiI	GGNNCC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	6
BsaHI	GRCGYC	2 cut(s)	345, 366
BsaJI	CCNNGG	3 cut(s)	97, 288, 340
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 322
BseDI	CCNNGG	3 cut(s)	97, 288, 340
BseLI	CCNNNNNNNGG	2 cut(s)	156, 322
BseMII	CTCAG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	187, 190
BshFI	GGCC	2 cut(s)	102, 339
BshNI	GGYRCC	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	3 cut(s)	71, 96, 154
BslI	CCNNNNNNNGG	2 cut(s)	156, 322
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	3 cut(s)	71, 96, 154
BsnI	GGCC	2 cut(s)	102, 339
BspANI	GGCC	2 cut(s)	102, 339
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	97, 288, 340
BssNI	GRCGYC	2 cut(s)	345, 366
BssT1I	CCWWGG	2 cut(s)	97, 288
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	2 cut(s)	345, 366
BstC8I	GCNNGC	2 cut(s)	42, 337
BstDEI	CTNAG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	2 cut(s)	214, 347
BstMAI	GTCTC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 332
BstV1I	GCAGC	2 cut(s)	187, 190
BstV2I	GAAGAC	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	102, 339
Cac8I	GCNNGC	2 cut(s)	42, 337
CfoI	GCGC	2 cut(s)	214, 347
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviJI	RGCY	5 cut(s)	44, 102, 120, 339, 409
CviKI_1	RGCY	5 cut(s)	44, 102, 120, 339, 409
DdeI	CTNAG	1 cut(s)	378
DinI	GGCGCC	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	97, 288
EcoT14I	CCWWGG	2 cut(s)	97, 288
EgeI	GGCGCC	1 cut(s)	346
EheI	GGCGCC	1 cut(s)	346
ErhI	CCWWGG	2 cut(s)	97, 288
FaqI	GGGAC	3 cut(s)	71, 96, 154
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	2 cut(s)	201, 204
Fsp4HI	GCNGC	2 cut(s)	201, 204
GlaI	GCGC	2 cut(s)	213, 346
GluI	GCNGC	2 cut(s)	201, 204
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	102, 339
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	2 cut(s)	214, 347
Hin1I	GRCGYC	2 cut(s)	345, 366
Hin6I	GCGC	2 cut(s)	212, 345
HinP1I	GCGC	2 cut(s)	212, 345
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	4 cut(s)	7, 106, 374, 384
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	2 cut(s)	258, 381
Hpy188III	TCNNGA	2 cut(s)	301, 414
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	3 cut(s)	169, 371, 392
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 332
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	2 cut(s)	345, 366
HspAI	GCGC	2 cut(s)	212, 345
KasI	GGCGCC	1 cut(s)	344
LpnPI	CCDG	5 cut(s)	58, 116, 127, 231, 321
Lsp1109I	GCAGC	2 cut(s)	187, 190
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	8
MboII	GAAGA	2 cut(s)	73, 146
MluCI	AATT	2 cut(s)	295, 304
Mly113I	GGCGCC	1 cut(s)	345
MlyI	GAGTC	3 cut(s)	16, 383, 393
MnlI	CCTC	6 cut(s)	30, 41, 160, 263, 316, 350
MspI	CCGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	209, 332
NarI	GGCGCC	1 cut(s)	345
NlaIV	GGNNCC	1 cut(s)	346
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	2 cut(s)	173, 348
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	202, 205
PleI	GAGTC	3 cut(s)	15, 382, 392
PluTI	GGCGCC	1 cut(s)	348
PpsI	GAGTC	3 cut(s)	15, 382, 392
PspN4I	GGNNCC	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	283
SatI	GCNGC	2 cut(s)	201, 204
SchI	GAGTC	3 cut(s)	16, 383, 393
SetI	ASST	5 cut(s)	81, 274, 358, 369, 411
SfoI	GGCGCC	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	2 cut(s)	295, 304
SspDI	GGCGCC	1 cut(s)	344
StyI	CCWWGG	2 cut(s)	97, 288
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	3 cut(s)	5, 284, 390
TasI	AATT	2 cut(s)	295, 304
TfiI	GAWTC	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	200, 203
Tsp45I	GTSAC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	284
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.