Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Forward (+)

54963111 .. 54970283

Gene Structure 7173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00323820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCGAGTCACCGAAAACCTCAAGGCAACACCAATAGGCAAGCAGGAGGAAGCAAGGGTTTCGCCAAAACCCAAAAGGTCTCTTCGTCCCCAAAAATCAAGGCCGAATCGTCCCGAAGCCCTAAATCCCCAAATCTCACGCTCTCTACCTCCTTCCGGCAATCTTTGTCCCGCCCATCCAATGCCGAAGCTTCAAGCGTCGTCGCTTCTACACTACGGAGAGTAGTAGTAGTAGTAGTAGTAGGGTTTGGATGGGAGAGAGAGGTGAGTGGGTGTCGACCAAGGGAAGGCCTTAGTGCCGACGAAGGTGGATTGGACGTCGTGGTGTCTCGCAGAGTCATCGATCTTCTCAATAGAGAGCTTTCTCGATTCCTCGAGCTAAACCCTAAGGAATTTTGGAAACAAGATCTTCTAACAGGGATCCCGGTGCTCGGGCGTCGAAGTCTCGGTCCGAAAGACCATGAAGGCATGTCTCTTGAATTGACAATTGGTGCTGCCTTCTTCCTTCAAACATTGGCTGTAAATGACGCAACTGTAAAGTTTGAGATTTGGGATACAGCAAGTCAAGAGAGGAAGAACAACCAAGACAAGCTACAAATGCTAAAAAGCATACATAACAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

208

Amino Acids

22.92

Weight (kDa)

10.16

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	159 - 194	7.5e-06	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	321
AccI	GTMKAC	1 cut(s)	277
AciI	CCGC	1 cut(s)	172
AclWI	GGATC	2 cut(s)	415, 428
AcsI	RAATTY	1 cut(s)	392
AcyI	GRCGYC	2 cut(s)	318, 436
AfiI	CCNNNNNNNGG	3 cut(s)	156, 287, 431
AgsI	TTSAA	3 cut(s)	195, 479, 509
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	4 cut(s)	191, 361, 379, 592
AluI	AGCT	4 cut(s)	191, 361, 379, 592
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	4 cut(s)	85, 333, 449, 477
AlwI	GGATC	2 cut(s)	415, 428
Ama87I	CYCGRG	2 cut(s)	374, 431
AoxI	GGCC	2 cut(s)	102, 289
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	392
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
AspS9I	GGNCC	1 cut(s)	449
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	2 cut(s)	374, 431
AvaII	GGWCC	1 cut(s)	449
AxyI	CCTNAGG	1 cut(s)	387
BamHI	GGATCC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	2 cut(s)	184, 246
BcgI	CGANNNNNNTGC	4 cut(s)	43, 77, 322, 356
BciVI	GTATCC	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	4 cut(s)	85, 333, 449, 477
BfuI	GTATCC	1 cut(s)	547
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	425
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	2 cut(s)	374, 431
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	342
BsaHI	GRCGYC	2 cut(s)	318, 436
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 287, 431
Bse21I	CCTNAGG	1 cut(s)	387
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	176, 257
BseLI	CCNNNNNNNGG	3 cut(s)	156, 287, 431
BseXI	GCAGC	1 cut(s)	481
BshFI	GGCC	2 cut(s)	104, 291
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	2 cut(s)	374, 431
BsiSI	CCGG	2 cut(s)	157, 425
BslFI	GGGAC	3 cut(s)	73, 97, 154
BslI	CCNNNNNNNGG	3 cut(s)	156, 287, 431
BsmAI	GTCTC	4 cut(s)	85, 333, 449, 477
BsmFI	GGGAC	3 cut(s)	73, 97, 154
BsnI	GGCC	2 cut(s)	104, 291
Bso31I	GGTCTC	1 cut(s)	85
BsoBI	CYCGRG	2 cut(s)	374, 431
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	3 cut(s)	343, 406, 420
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	2 cut(s)	104, 291
BspDI	ATCGAT	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	2 cut(s)	415, 428
BspTNI	GGTCTC	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	3 cut(s)	343, 406, 420
BssNI	GRCGYC	2 cut(s)	318, 436
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	535
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	2 cut(s)	318, 436
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	293, 387
BstF5I	GGATG	2 cut(s)	176, 257
BstKTI	GATC	3 cut(s)	346, 409, 423
BstMAI	GTCTC	4 cut(s)	85, 333, 449, 477
BstMBI	GATC	3 cut(s)	343, 406, 420
BstMWI	GCNNNNNNNGC	1 cut(s)	598
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	2 cut(s)	406, 420
BstYI	RGATCY	2 cut(s)	406, 420
Bsu15I	ATCGAT	1 cut(s)	342
Bsu36I	CCTNAGG	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	104, 291
BsuTUI	ATCGAT	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	176, 257
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	449
ClaI	ATCGAT	1 cut(s)	342
CpoI	CGGWCCG	1 cut(s)	449
CseI	GACGC	3 cut(s)	187, 425, 536
CspI	CGGWCCG	1 cut(s)	449
CviAII	CATG	2 cut(s)	461, 469
CviJI	RGCY	8 cut(s)	104, 120, 191, 291, 361, 379, 518, 592
CviKI_1	RGCY	8 cut(s)	104, 120, 191, 291, 361, 379, 518, 592
DdeI	CTNAG	2 cut(s)	293, 387
DpnI	GATC	3 cut(s)	345, 408, 422
DpnII	GATC	3 cut(s)	343, 406, 420
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	281
Eco147I	AGGCCT	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	449
Eco81I	CCTNAGG	1 cut(s)	387
Eco88I	CYCGRG	2 cut(s)	374, 431
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	2 cut(s)	464, 472
FaiI	YATR	4 cut(s)	462, 470, 611, 615
FaqI	GGGAC	3 cut(s)	73, 97, 154
FatI	CATG	2 cut(s)	460, 468
FauI	CCCGC	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	2 cut(s)	163, 264
Fsp4HI	GCNGC	1 cut(s)	495
GluI	GCNGC	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	104, 291
HapII	CCGG	2 cut(s)	157, 425
HgaI	GACGC	3 cut(s)	187, 425, 536
Hin1I	GRCGYC	2 cut(s)	318, 436
Hin1II	CATG	2 cut(s)	464, 472
HincII	GTYRAC	1 cut(s)	278
HindII	GTYRAC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	4 cut(s)	7, 107, 336, 369
HpaII	CCGG	2 cut(s)	157, 425
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	5 cut(s)	114, 366, 476, 566, 624
Hpy8I	GTNNAC	1 cut(s)	278
Hpy99I	CGWCG	5 cut(s)	203, 206, 305, 323, 441
HpyAV	CCTTC	6 cut(s)	163, 281, 299, 458, 508, 515
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4IV	ACGT	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	598
HpyF3I	CTNAG	2 cut(s)	293, 387
HpySE526I	ACGT	1 cut(s)	318
Hsp92I	GRCGYC	2 cut(s)	318, 436
Hsp92II	CATG	2 cut(s)	464, 472
Kzo9I	GATC	3 cut(s)	343, 406, 420
LpnPI	CCDG	4 cut(s)	30, 170, 402, 438
Lsp1109I	GCAGC	1 cut(s)	481
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	345, 408, 422
MboI	GATC	3 cut(s)	343, 406, 420
MboII	GAAGA	5 cut(s)	75, 338, 401, 493, 586
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	2 cut(s)	406, 420
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	3 cut(s)	392, 479, 486
MlyI	GAGTC	2 cut(s)	16, 345
MnlI	CCTC	6 cut(s)	30, 41, 160, 256, 383, 564
MspI	CCGG	2 cut(s)	157, 425
MspR9I	CCNGG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	598
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	3 cut(s)	343, 406, 420
NlaIII	CATG	2 cut(s)	464, 472
NlaIV	GGNNCC	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	1 cut(s)	472
PaeR7I	CTCGAG	1 cut(s)	374
PceI	AGGCCT	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	107, 369
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	2 cut(s)	15, 344
PpsI	GAGTC	2 cut(s)	15, 344
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	449
PspXI	VCTCGAGB	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	406, 420
Rsr2I	CGGWCCG	1 cut(s)	449
RsrII	CGGWCCG	1 cut(s)	449
SalI	GTCGAC	1 cut(s)	276
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	3 cut(s)	343, 406, 420
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	2 cut(s)	16, 345
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	21, 374
SmoI	CTYRAG	2 cut(s)	21, 374
Sse9I	AATT	3 cut(s)	392, 479, 486
SseBI	AGGCCT	1 cut(s)	291
SsiI	CCGC	1 cut(s)	172
StuI	AGGCCT	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	535
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	6 cut(s)	5, 277, 342, 367, 375, 439
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	3 cut(s)	392, 479, 486
TfiI	GAWTC	2 cut(s)	107, 369
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	1 cut(s)	472
XhoI	CTCGAG	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	277
ZraI	GACGTC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.