Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

46176471 .. 46177328

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCGAGTCACCGAAACCCTCAAGGCAACACCAATAGGCAAGTCGGAGGAAGCAAGGGTTTCGCCAAAACCCAAAAGGTCTTCATCCCCAAAAATCGAGGCCGAGAATCGTTGCGAAGTCCTAAATCCCCAAATCCCACGCTCTTTGCCTCTCTTTGGCAATCGTTGTCCCGATCGTCCAATGCCGAAGTTTCAAGTGCTGCTTCTTCGCGCCACGGGAGAGTAGTAGTAGTAGTAGTAGTAGGGTTCGGATGGGAGAGAGAGGCGGACCGGGTGTCGACCAAGGGAAATTTCGTGAATTACTTGCCTCAAGATGAGGCGGTTGCCGCTAGCCTCGGCACCGACGAAGGTGGATTGGACGTCGTGGTGTCTCAAAGAGTCGTCGATCTTCTCAATAGAGAGCTTTCTCGATTGCTCAATCTAAACCCTAAGGAATTTTGGAAACAAGTGGCTAGTGATACTTCCTTGCGTGAATTTCTGGAGAGCTTCCTACAGTTTCGTAACAGATTTGATTTGTTTTCTCATGCTGCTGTAGAATATGTACTCCAAAGTGGATCTCATTTTCTGAGTCAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

192

Amino Acids

21.33

Weight (kDa)

9.97

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	278
AccII	CGCG	1 cut(s)	211
AciI	CCGC	3 cut(s)	266, 320, 327
AclWI	GGATC	1 cut(s)	562
AcsI	RAATTY	3 cut(s)	289, 434, 473
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	195
AhdI	GACNNNNNGTC	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	2 cut(s)	403, 486
AluI	AGCT	2 cut(s)	403, 486
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	562
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	200, 527
ApoI	RAATTY	3 cut(s)	289, 434, 473
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	272
AsuNHI	GCTAGC	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	268
AxyI	CCTNAGG	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	187, 514
BccI	CCATC	1 cut(s)	246
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	2 cut(s)	330, 453
BfmI	CTRYAG	2 cut(s)	491, 531
BisI	GCNGC	3 cut(s)	201, 327, 528
BlsI	GCNGC	3 cut(s)	202, 328, 529
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	268
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	272
BmtI	GCTAGC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	500
BpuEI	CTTGAG	2 cut(s)	6, 294
BpuMI	CCSGG	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	214, 282, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse21I	CCTNAGG	1 cut(s)	429
BseDI	CCNNGG	3 cut(s)	214, 282, 334
BseGI	GGATG	2 cut(s)	84, 257
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	557
BseXI	GCAGC	2 cut(s)	187, 514
Bsh1236I	CGCG	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	338
BsiEI	CGRYCG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	173, 385, 554
BspACI	CCGC	3 cut(s)	266, 320, 327
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	575
BspLI	GGNNCC	1 cut(s)	340
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	562
BspT107I	GGYRCC	1 cut(s)	338
BssECI	CCNNGG	3 cut(s)	214, 282, 334
BssMI	GATC	3 cut(s)	173, 385, 554
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	495
BstACI	GRCGYC	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	429, 566
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	84, 257
BstFNI	CGCG	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	3 cut(s)	176, 388, 557
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	3 cut(s)	173, 385, 554
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	2 cut(s)	491, 531
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	187, 514
BstV2I	GAAGAC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	84, 257
Cac8I	GCNNGC	1 cut(s)	331
CciI	TCATGA	1 cut(s)	575
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	268
CpoI	CGGWCCG	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	542
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CspI	CGGWCCG	1 cut(s)	268
CviAII	CATG	2 cut(s)	524, 576
CviJI	RGCY	5 cut(s)	102, 333, 403, 452, 486
CviKI_1	RGCY	5 cut(s)	102, 333, 403, 452, 486
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	2 cut(s)	429, 566
DpnI	GATC	3 cut(s)	175, 387, 556
DpnII	GATC	3 cut(s)	173, 385, 554
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EciI	GGCGGA	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	268
Eco81I	CCTNAGG	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	527, 579
FaiI	YATR	3 cut(s)	525, 540, 577
FalI	AAGNNNNNCTT	2 cut(s)	187, 219
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	523, 575
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	3 cut(s)	201, 327, 528
FokI	GGATG	2 cut(s)	71, 264
Fsp4HI	GCNGC	3 cut(s)	201, 327, 528
FspBI	CTAG	2 cut(s)	330, 453
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	3 cut(s)	201, 327, 528
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	271
HhaI	GCGC	1 cut(s)	213
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	527, 579
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	4 cut(s)	7, 107, 378, 568
HpaII	CCGG	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	3 cut(s)	47, 251, 567
Hpy188III	TCNNGA	6 cut(s)	171, 295, 311, 408, 479, 576
Hpy8I	GTNNAC	1 cut(s)	279
Hpy99I	CGWCG	3 cut(s)	347, 365, 386
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	495
HpyCH4IV	ACGT	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	2 cut(s)	429, 566
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	527, 579
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	173, 385, 554
LpnPI	CCDG	2 cut(s)	284, 464
Lsp1109I	GCAGC	2 cut(s)	187, 514
MaeI	CTAG	2 cut(s)	330, 453
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	8, 500
MalI	GATC	3 cut(s)	175, 387, 556
MboI	GATC	3 cut(s)	173, 385, 554
MboII	GAAGA	3 cut(s)	73, 198, 380
MflI	RGATCY	1 cut(s)	554
MluCI	AATT	4 cut(s)	289, 298, 434, 473
MlyI	GAGTC	3 cut(s)	16, 387, 577
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	8 cut(s)	30, 41, 92, 160, 256, 310, 318, 344
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	326
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	3 cut(s)	173, 385, 554
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	2 cut(s)	527, 579
NlaIV	GGNNCC	1 cut(s)	340
NmeAIII	GCCGAG	2 cut(s)	128, 315
NmuCI	GTSAC	1 cut(s)	8
PagI	TCATGA	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	3 cut(s)	202, 328, 529
Ple19I	CGATCG	1 cut(s)	176
PleI	GAGTC	3 cut(s)	15, 386, 576
PpsI	GAGTC	3 cut(s)	15, 386, 576
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	554
PvuI	CGATCG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
Rsr2I	CGGWCCG	1 cut(s)	268
RsrII	CGGWCCG	1 cut(s)	268
SalI	GTCGAC	1 cut(s)	277
SatI	GCNGC	3 cut(s)	201, 327, 528
Sau3AI	GATC	3 cut(s)	173, 385, 554
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	3 cut(s)	16, 387, 577
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	5 cut(s)	81, 352, 363, 405, 488
SfcI	CTRYAG	2 cut(s)	491, 531
SinI	GGWCC	1 cut(s)	268
SmlI	CTYRAG	2 cut(s)	21, 309
SmoI	CTYRAG	2 cut(s)	21, 309
Sse9I	AATT	4 cut(s)	289, 298, 434, 473
SsiI	CCGC	3 cut(s)	266, 320, 327
SspMI	CTAG	2 cut(s)	330, 453
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	495
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	5 cut(s)	5, 97, 278, 384, 409
TasI	AATT	4 cut(s)	289, 298, 434, 473
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	200, 527
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	3 cut(s)	289, 434, 473
XmiI	GTMKAC	1 cut(s)	278
XspI	CTAG	2 cut(s)	330, 453
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.