Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

41653014 .. 41661972

Gene Structure 8959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG165000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGAGAGAGAGGCGAGTGGGTGTCGACCGAGGGAAATTTCGTGAATCACTTGCTCCAAGATGAAGCGGTTGCCGCCAGCCTAGGTGCCGACGAAGGTGGATTGGATGCCGTGGAGTCTCAGAGAGTCGTCGATCTTCTCAATAGAGAGCTTTCTCGATTGCTCAAGCTAAACTCTAAGGAATTTTGGAAACAAGTGGCTAGTGATACTTCCTTACGTGAATTTCTGCTGAGTCCCATGATTCCCTACCTTTTGTTGGAACCATCATCAGAGCAATGCAGGGGGCACATTTCTTTGCCAAGGCTCATGTTTCGAATGTTCACGCAATTTCACAATTTCATGGAGGTAAAGTACCTTCCTGTTGTTCCACCTCTTGATAACAAGAAAGAAAGTGCTTTCCACTTTGCTCAGAGGACTAGTCATGCTATGGCAGCTGCACTCAATGTTGTACAGACATCTCATTCTTTTGGAGACTTGATGCTTCTCATGAAAGCAGCTGATTCAAAATCGAAACAGGTGCGGCCCTCAGCTGACATGGTTGAAATGGCGAGTGTAAAATATATATTCATTCCCCTTCACGATGAAATTGAAGATCACTGGTTTATGTTGGTTATGAAACTCGATAGAAAATCTGCCGAGATGTGGGACAGCCTACCAGATATTGTATCATCGGCTCGAAGATTCGAGAAGGCAAGAGTTGCGATGTTGCTACTGCAGACAAGGTACTCAGTTCCAACAGAATGCTTGATGCACAAGTACGGAAATAGCTTGCACCTCATCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0050200 GO:0071617 GO:0071618 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase EF-hand_1 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

261

Amino Acids

29.86

Weight (kDa)

6.21

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	172 - 223	1.1e-06	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	26
AciI	CCGC	3 cut(s)	68, 75, 520
AcsI	RAATTY	3 cut(s)	37, 182, 221
AfaI	GTAC	4 cut(s)	353, 450, 725, 758
AfiI	CCNNNNNNNGG	2 cut(s)	256, 642
AgsI	TTSAA	3 cut(s)	504, 542, 590
AhlI	ACTAGT	1 cut(s)	416
AluBI	AGCT	6 cut(s)	151, 169, 434, 497, 530, 768
AluI	AGCT	6 cut(s)	151, 169, 434, 497, 530, 768
Alw26I	GTCTC	2 cut(s)	123, 465
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	3 cut(s)	431, 434, 494
ApoI	RAATTY	3 cut(s)	37, 182, 221
AspA2I	CCTAGG	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	522
AsuII	TTCGAA	1 cut(s)	313
AvrII	CCTAGG	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	86
BarI	GAAGNNNNNNTAC	2 cut(s)	339, 371
BbvCI	CCTCAGC	1 cut(s)	526
BbvI	GCAGC	3 cut(s)	421, 443, 506
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	95
BcgI	CGANNNNNNTGC	2 cut(s)	499, 533
BcoDI	GTCTC	2 cut(s)	123, 465
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	3 cut(s)	83, 201, 417
BfmI	CTRYAG	1 cut(s)	713
BisI	GCNGC	5 cut(s)	75, 432, 435, 495, 521
BlnI	CCTAGG	1 cut(s)	82
BlsI	GCNGC	5 cut(s)	76, 433, 436, 496, 522
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	2 cut(s)	88, 261
BmsI	GCATC	3 cut(s)	97, 468, 738
Bpu10I	CCTNAGC	1 cut(s)	526
Bpu14I	TTCGAA	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	218
BsaJI	CCNNGG	4 cut(s)	30, 82, 111, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 642
Bse1I	ACTGG	1 cut(s)	602
Bse3DI	GCAATG	1 cut(s)	281
BseDI	CCNNGG	4 cut(s)	30, 82, 111, 299
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	2 cut(s)	256, 642
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	5 cut(s)	134, 221, 422, 540, 741
BseNI	ACTGG	1 cut(s)	602
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	421, 443, 506
BsgI	GTGCAG	1 cut(s)	420
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	523
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	30
BslFI	GGGAC	2 cut(s)	219, 659
BslI	CCNNNNNNNGG	2 cut(s)	256, 642
BsmAI	GTCTC	2 cut(s)	123, 465
BsmFI	GGGAC	2 cut(s)	219, 659
BsmI	GAATGC	1 cut(s)	746
BsnI	GGCC	1 cut(s)	523
Bsp119I	TTCGAA	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp1407I	TGTACA	1 cut(s)	448
Bsp143I	GATC	2 cut(s)	133, 592
BspACI	CCGC	3 cut(s)	68, 75, 520
BspANI	GGCC	1 cut(s)	523
BspCNI	CTCAG	5 cut(s)	133, 222, 421, 539, 740
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	88, 261
BspMAI	CTGCAG	1 cut(s)	717
BspT104I	TTCGAA	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	281
BsrGI	TGTACA	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	4 cut(s)	30, 82, 111, 299
BssMI	GATC	2 cut(s)	133, 592
BssT1I	CCWWGG	2 cut(s)	82, 299
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstAUI	TGTACA	1 cut(s)	448
BstBAI	YACGTR	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	79, 770
BstDEI	CTNAG	6 cut(s)	120, 177, 230, 408, 526, 727
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	136, 595
BstMAI	GTCTC	2 cut(s)	123, 465
BstMBI	GATC	2 cut(s)	133, 592
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 431, 698
BstSFI	CTRYAG	1 cut(s)	713
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	421, 443, 506
BsuRI	GGCC	1 cut(s)	523
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	716
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	595
Cac8I	GCNNGC	2 cut(s)	79, 770
CciI	TCATGA	1 cut(s)	486
Cfr13I	GGNCC	1 cut(s)	522
Csp6I	GTAC	4 cut(s)	352, 449, 724, 757
CviAII	CATG	6 cut(s)	238, 307, 340, 422, 487, 535
CviQI	GTAC	4 cut(s)	352, 449, 724, 757
DdeI	CTNAG	6 cut(s)	120, 177, 230, 408, 526, 727
DpnI	GATC	2 cut(s)	135, 594
DpnII	GATC	2 cut(s)	133, 592
Eco130I	CCWWGG	2 cut(s)	82, 299
EcoT14I	CCWWGG	2 cut(s)	82, 299
ErhI	CCWWGG	2 cut(s)	82, 299
FaeI	CATG	6 cut(s)	241, 310, 343, 425, 490, 538
FaqI	GGGAC	2 cut(s)	219, 659
FatI	CATG	6 cut(s)	237, 306, 339, 421, 486, 534
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	5 cut(s)	75, 432, 435, 495, 521
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	5 cut(s)	75, 432, 435, 495, 521
FspBI	CTAG	3 cut(s)	83, 201, 417
GluI	GCNGC	5 cut(s)	75, 432, 435, 495, 521
HaeIII	GGCC	1 cut(s)	523
Hin1II	CATG	6 cut(s)	241, 310, 343, 425, 490, 538
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	7 cut(s)	46, 116, 126, 232, 241, 500, 681
Hpy166II	GTNNAC	2 cut(s)	27, 321
Hpy188I	TCNGA	4 cut(s)	123, 271, 411, 785
Hpy188III	TCNNGA	6 cut(s)	43, 156, 374, 487, 578, 685
Hpy8I	GTNNAC	2 cut(s)	27, 321
Hpy99I	CGWCG	2 cut(s)	95, 134
HpyAV	CCTTC	4 cut(s)	89, 365, 584, 682
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	5 cut(s)	279, 437, 715, 751, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 431, 698
HpyF3I	CTNAG	6 cut(s)	120, 177, 230, 408, 526, 727
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	6 cut(s)	241, 310, 343, 425, 490, 538
Kzo9I	GATC	2 cut(s)	133, 592
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	6 cut(s)	91, 265, 372, 500, 583, 669
Lsp1109I	GCAGC	3 cut(s)	421, 443, 506
LweI	GCATC	3 cut(s)	97, 468, 738
MaeI	CTAG	3 cut(s)	83, 201, 417
MaeII	ACGT	1 cut(s)	217
MalI	GATC	2 cut(s)	135, 594
MboI	GATC	2 cut(s)	133, 592
MboII	GAAGA	4 cut(s)	128, 602, 690, 772
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	6 cut(s)	37, 182, 221, 326, 334, 585
MlyI	GAGTC	3 cut(s)	125, 135, 241
MmeI	TCCRAC	2 cut(s)	237, 758
MnlI	CCTC	7 cut(s)	5, 25, 337, 381, 405, 535, 785
MspA1I	CMGCKG	3 cut(s)	434, 497, 530
Mva1269I	GAATGC	1 cut(s)	746
MwoI	GCNNNNNNNGC	3 cut(s)	74, 431, 698
NdeII	GATC	2 cut(s)	133, 592
NlaIII	CATG	6 cut(s)	241, 310, 343, 425, 490, 538
NlaIV	GGNNCC	2 cut(s)	88, 261
NmeAIII	GCCGAG	1 cut(s)	661
NspV	TTCGAA	1 cut(s)	313
PagI	TCATGA	1 cut(s)	486
PctI	GAATGC	1 cut(s)	746
PfeI	GAWTC	4 cut(s)	46, 241, 500, 681
PkrI	GCNGC	5 cut(s)	76, 433, 436, 496, 522
PleI	GAGTC	3 cut(s)	124, 134, 240
PpsI	GAGTC	3 cut(s)	124, 134, 240
Ppu21I	YACGTR	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	88, 261
PspPI	GGNCC	1 cut(s)	522
PstI	CTGCAG	1 cut(s)	717
PvuII	CAGCTG	3 cut(s)	434, 497, 530
RsaI	GTAC	4 cut(s)	353, 450, 725, 758
RsaNI	GTAC	4 cut(s)	352, 449, 724, 757
SalI	GTCGAC	1 cut(s)	25
SatI	GCNGC	5 cut(s)	75, 432, 435, 495, 521
Sau3AI	GATC	2 cut(s)	133, 592
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	3 cut(s)	125, 135, 241
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	3 cut(s)	97, 468, 738
SfcI	CTRYAG	1 cut(s)	713
SfuI	TTCGAA	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	6 cut(s)	37, 182, 221, 326, 334, 585
SsiI	CCGC	3 cut(s)	68, 75, 520
SspMI	CTAG	3 cut(s)	83, 201, 417
StyI	CCWWGG	2 cut(s)	82, 299
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	8 cut(s)	26, 132, 157, 313, 509, 621, 676, 684
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	6 cut(s)	37, 182, 221, 326, 334, 585
TatI	WGTACW	1 cut(s)	448
TauI	GCSGC	2 cut(s)	77, 523
TfiI	GAWTC	4 cut(s)	46, 241, 500, 681
TscAI	CASTG	1 cut(s)	602
TseI	GCWGC	3 cut(s)	431, 434, 494
TspDTI	ATGAA	6 cut(s)	78, 328, 503, 556, 597, 629
TspGWI	ACGGA	1 cut(s)	774
TspRI	CASTG	1 cut(s)	602
XapI	RAATTY	3 cut(s)	37, 182, 221
XmaJI	CCTAGG	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	26
XspI	CTAG	3 cut(s)	83, 201, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.