Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029026.1

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

343 .. 648

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029026.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ctgtcccagccgtccaatgtcgaagtttcaagtgctgctgcttctgcaccgccaaagaatagtagtagtagtagtagggttgggatgggagagagaggcgagtgggtgtcgaccaagggaaatttcgtgaattacttgccccaagatgaggcggtttccgctagcctaggcgccgacgaaggtggattggatgccgtggagtctcagagagtcgtcgatcttctcaatagagagctttctcgattgctcaagctaaaccctaaggaattttggaaacaaggtattggtggatttgtcttatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

101

Amino Acids

10.71

Weight (kDa)

5.05

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	110
AciI	CCGC	3 cut(s)	50, 152, 159
AcsI	RAATTY	2 cut(s)	121, 266
AcyI	GRCGYC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	30
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	2 cut(s)	235, 253
AluI	AGCT	2 cut(s)	235, 253
Alw26I	GTCTC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	35, 38
ApoI	RAATTY	2 cut(s)	121, 266
AspA2I	CCTAGG	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	173
AsuNHI	GCTAGC	1 cut(s)	161
AvrII	CCTAGG	1 cut(s)	166
AxyI	CCTNAGG	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	22, 25
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	2 cut(s)	162, 167
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	2 cut(s)	36, 39
BlnI	CCTAGG	1 cut(s)	166
BlsI	GCNGC	2 cut(s)	37, 40
BmiI	GGNNCC	1 cut(s)	172
BmsI	GCATC	1 cut(s)	181
BmtI	GCTAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	114, 166, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse21I	CCTNAGG	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	114, 166, 195
BseGI	GGATG	2 cut(s)	90, 196
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	22, 25
BseYI	CCCAGC	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	3 cut(s)	50, 152, 159
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	172
BspOI	GCTAGC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	170
BssECI	CCNNGG	3 cut(s)	114, 166, 195
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	2 cut(s)	114, 166
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	2 cut(s)	204, 261
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	90, 196
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 158
BstV1I	GCAGC	2 cut(s)	22, 25
Bsu36I	CCTNAGG	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	90, 196
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	173
CviJI	RGCY	4 cut(s)	10, 165, 235, 253
CviKI_1	RGCY	4 cut(s)	10, 165, 235, 253
DdeI	CTNAG	2 cut(s)	204, 261
DinI	GGCGCC	1 cut(s)	172
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	114, 166
Eco81I	CCTNAGG	1 cut(s)	261
EcoT14I	CCWWGG	2 cut(s)	114, 166
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
ErhI	CCWWGG	2 cut(s)	114, 166
FaiI	YATR	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	36, 39
FokI	GGATG	2 cut(s)	97, 203
Fsp4HI	GCNGC	2 cut(s)	36, 39
FspBI	CTAG	2 cut(s)	162, 167
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	2 cut(s)	36, 39
GsaI	CCCAGC	1 cut(s)	10
HaeII	RGCGCY	1 cut(s)	174
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HinfI	GANTC	2 cut(s)	200, 210
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	127, 240
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	2 cut(s)	179, 218
HpyAV	CCTTC	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 158
HpyF3I	CTNAG	2 cut(s)	204, 261
Hsp92I	GRCGYC	1 cut(s)	171
HspAI	GCGC	1 cut(s)	171
KasI	GGCGCC	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	1 cut(s)	20
Lsp1109I	GCAGC	2 cut(s)	22, 25
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	162, 167
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	212
MluCI	AATT	3 cut(s)	121, 130, 266
Mly113I	GGCGCC	1 cut(s)	171
MlyI	GAGTC	2 cut(s)	209, 219
MnlI	CCTC	2 cut(s)	89, 142
MwoI	GCNNNNNNNGC	2 cut(s)	44, 158
NarI	GGCGCC	1 cut(s)	171
NdeII	GATC	1 cut(s)	217
NheI	GCTAGC	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	37, 40
PleI	GAGTC	2 cut(s)	208, 218
PluTI	GGCGCC	1 cut(s)	174
PpsI	GAGTC	2 cut(s)	208, 218
PspFI	CCCAGC	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	172
SalI	GTCGAC	1 cut(s)	109
SatI	GCNGC	2 cut(s)	36, 39
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	2 cut(s)	209, 219
SetI	ASST	4 cut(s)	184, 237, 255, 283
SfaNI	GCATC	1 cut(s)	181
SfoI	GGCGCC	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	3 cut(s)	121, 130, 266
SsiI	CCGC	3 cut(s)	50, 152, 159
SspDI	GGCGCC	1 cut(s)	170
SspMI	CTAG	2 cut(s)	162, 167
StyI	CCWWGG	2 cut(s)	114, 166
TaqI	TCGA	4 cut(s)	21, 110, 216, 241
TasI	AATT	3 cut(s)	121, 130, 266
TseI	GCWGC	2 cut(s)	35, 38
XapI	RAATTY	2 cut(s)	121, 266
XmaJI	CCTAGG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	110
XspI	CTAG	2 cut(s)	162, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.