Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Forward (+)

25657865 .. 25659003

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018132

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTGAGTCACCGAAACCCTCAAGGCAATACCAATAGGCAAGCCGGAGGAAGCAAGGGTTTCGCCAAAACCCAAAAGGTCTTCGTCCCTAAAAATCAAGGCCAGAATCATCCCAGAAGCCCTAAATCCCCAAATCCCACGCTCTCTGCCTCTCTTCGGCAATCGCTGTCCCAGTCGTCCAATGTTGAAGTTTCAAGTGCTGCTGCTTCTGCACCGTCGGAGAGTAGTAGTAGTAGTAGTAGGGTTCAGATGGGAGAGAGAGGCGAGTGGGTGTCGACCAAGGAAAATTTCATGAATTACTTGCCCCAAGATGAGGCGGTTGCCGCTAGCCTCGGCACCGACGAAGCTGCAAACACAGACTCCAAACAATCACCAGATGCACTTTCTTCTTATCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

134

Amino Acids

14.1

Weight (kDa)

9.4

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	2 cut(s)	317, 324
AcsI	RAATTY	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	156, 313
AgsI	TTSAA	2 cut(s)	188, 195
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	200, 203, 347
ApoI	RAATTY	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	363
AsuNHI	GCTAGC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	3 cut(s)	187, 190, 334
BccI	CCATC	1 cut(s)	244
BcgI	CGANNNNNNTGC	4 cut(s)	43, 77, 329, 363
BfaI	CTAG	1 cut(s)	327
BisI	GCNGC	4 cut(s)	201, 204, 324, 348
BlsI	GCNGC	4 cut(s)	202, 205, 325, 349
BmiI	GGNNCC	1 cut(s)	337
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	367
BmtI	GCTAGC	1 cut(s)	330
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	279, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 313
Bse1I	ACTGG	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	279, 331
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	2 cut(s)	156, 313
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	187, 190, 334
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	71, 154
BslI	CCNNNNNNNGG	2 cut(s)	156, 313
BsmFI	GGGAC	2 cut(s)	71, 154
BsnI	GGCC	1 cut(s)	102
BspACI	CCGC	2 cut(s)	317, 324
BspANI	GGCC	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	337
BspOI	GCTAGC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	279, 331
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	42, 328
BstF5I	GGATG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 323
BstV1I	GCAGC	3 cut(s)	187, 190, 334
BstV2I	GAAGAC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	109
Cac8I	GCNNGC	2 cut(s)	42, 328
CciI	TCATGA	1 cut(s)	291
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	5 cut(s)	44, 102, 120, 330, 347
CviKI_1	RGCY	5 cut(s)	44, 102, 120, 330, 347
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	295
FaiI	YATR	1 cut(s)	293
FaqI	GGGAC	2 cut(s)	71, 154
FatI	CATG	1 cut(s)	291
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	4 cut(s)	201, 204, 324, 348
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	201, 204, 324, 348
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	4 cut(s)	201, 204, 324, 348
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HinfI	GANTC	3 cut(s)	7, 106, 359
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	363
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	2 cut(s)	220, 249
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	1 cut(s)	276
Hpy99I	CGWCG	2 cut(s)	220, 344
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	212, 350, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 323
Hsp92II	CATG	1 cut(s)	295
LpnPI	CCDG	5 cut(s)	58, 116, 127, 185, 387
Lsp1109I	GCAGC	3 cut(s)	187, 190, 334
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	8
MboII	GAAGA	3 cut(s)	73, 146, 378
MluCI	AATT	2 cut(s)	286, 295
MlyI	GAGTC	2 cut(s)	16, 353
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	6 cut(s)	30, 41, 160, 254, 307, 341
MspI	CCGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	209, 323
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	337
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	8
PagI	TCATGA	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	4 cut(s)	202, 205, 325, 349
PleI	GAGTC	2 cut(s)	15, 353
PpsI	GAGTC	2 cut(s)	15, 353
PspN4I	GGNNCC	1 cut(s)	337
SalI	GTCGAC	1 cut(s)	274
SatI	GCNGC	4 cut(s)	201, 204, 324, 348
SchI	GAGTC	2 cut(s)	16, 353
SetI	ASST	2 cut(s)	81, 349
SfaNI	GCATC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	2 cut(s)	286, 295
SsiI	CCGC	2 cut(s)	317, 324
SspMI	CTAG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	275
TasI	AATT	2 cut(s)	286, 295
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	3 cut(s)	200, 203, 347
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	280, 308
XapI	RAATTY	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.