Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000847.1

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

81210 .. 81557

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000847.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgtcgagtgaccaaaaccctcagggcaacaccaataggcaagccggaggaagcaagggtttcgccaaaacccaaaaggtcttcgtccccaaaaatcaagaccagaatcgtcccagaagccctaaatccccaaatcccacgctctctgcctccctccagcaatcgctggcccagtcgtccaatgccgaagcttcaagcgccgctgcttctgcgccgccggaaagtagtagtagtagggttcggatgggagagagaggtgagtgggtgtcaaccaagggaaatttcgtgaattacttgcccaagatgaggcggttgccgctggcatcggcgccgatgaaggtggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

115

Amino Acids

12.3

Weight (kDa)

10.73

Isoelectric Point (pI)

60.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AciI	CCGC	4 cut(s)	201, 215, 310, 317
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	3 cut(s)	200, 214, 331
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	269
AxyI	CCTNAGG	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BfoI	RGCGCY	2 cut(s)	201, 332
BisI	GCNGC	4 cut(s)	201, 204, 215, 317
BlsI	GCNGC	4 cut(s)	202, 205, 216, 318
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	332
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	172
Bse21I	CCTNAGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	328
BsiSI	CCGG	2 cut(s)	45, 218
BslFI	GGGAC	2 cut(s)	71, 96
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmFI	GGGAC	2 cut(s)	71, 96
BsnI	GGCC	1 cut(s)	170
BspACI	CCGC	4 cut(s)	201, 215, 310, 317
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	273
BssNI	GRCGYC	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	329
BstC8I	GCNNGC	3 cut(s)	42, 168, 321
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	249
BstH2I	RGCGCY	2 cut(s)	201, 332
BstHHI	GCGC	3 cut(s)	200, 214, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 209, 316
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	3 cut(s)	42, 168, 321
CfoI	GCGC	3 cut(s)	200, 214, 331
Cfr13I	GGNCC	1 cut(s)	169
CviJI	RGCY	4 cut(s)	44, 120, 170, 191
CviKI_1	RGCY	4 cut(s)	44, 120, 170, 191
DdeI	CTNAG	1 cut(s)	21
DinI	GGCGCC	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	273
Eco81I	CCTNAGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	273
EgeI	GGCGCC	1 cut(s)	330
EheI	GGCGCC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	273
FaqI	GGGAC	2 cut(s)	71, 96
Fnu4HI	GCNGC	4 cut(s)	201, 204, 215, 317
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	4 cut(s)	201, 204, 215, 317
GlaI	GCGC	3 cut(s)	199, 213, 330
GluI	GCNGC	4 cut(s)	201, 204, 215, 317
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	2 cut(s)	201, 332
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	2 cut(s)	45, 218
HhaI	GCGC	3 cut(s)	200, 214, 331
Hin1I	GRCGYC	1 cut(s)	329
Hin6I	GCGC	3 cut(s)	198, 212, 329
HinP1I	GCGC	3 cut(s)	198, 212, 329
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	2 cut(s)	45, 218
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	2 cut(s)	98, 286
Hpy8I	GTNNAC	1 cut(s)	270
HpyAV	CCTTC	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 209, 316
HpyF3I	CTNAG	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	329
HspAI	GCGC	3 cut(s)	198, 212, 329
KasI	GGCGCC	1 cut(s)	328
LpnPI	CCDG	9 cut(s)	8, 58, 116, 127, 152, 170, 185, 231, 305
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	8
MboII	GAAGA	1 cut(s)	73
MluCI	AATT	2 cut(s)	280, 289
Mly113I	GGCGCC	1 cut(s)	329
MnlI	CCTC	6 cut(s)	30, 41, 160, 164, 248, 300
MspA1I	CMGCKG	2 cut(s)	203, 319
MspI	CCGG	2 cut(s)	45, 218
MwoI	GCNNNNNNNGC	3 cut(s)	197, 209, 316
NarI	GGCGCC	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	4 cut(s)	202, 205, 216, 318
PluTI	GGCGCC	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	169
SatI	GCNGC	4 cut(s)	201, 204, 215, 317
Sau96I	GGNCC	1 cut(s)	169
SetI	ASST	4 cut(s)	81, 193, 259, 342
SfaNI	GCATC	1 cut(s)	332
SfoI	GGCGCC	1 cut(s)	330
Sse9I	AATT	2 cut(s)	280, 289
SsiI	CCGC	4 cut(s)	201, 215, 310, 317
SspDI	GGCGCC	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	273
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	280, 289
TauI	GCSGC	3 cut(s)	203, 217, 319
TfiI	GAWTC	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.