Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Forward (+)

22756835 .. 22758102

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG234200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGAATTACTTGCCCCAAGATGAGGCAGTTTCCGTTGGCCTTGGCGCCGACGAAGGTGGATTGGACGCCGTGGAGTTTCAGAGAGTCGATAGTGAACCTGATATAATTGATGGTGCGGGTGCTGAAATAGGACATGTAATACGCACAACTGTTGGCGGTCGAGGTGGTCAATCTAGACAGGTCGGAAGAATGACTATTTGTATGGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

70

Amino Acids

7.35

Weight (kDa)

4.27

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AciI	CCGC	2 cut(s)	116, 156
AcsI	RAATTY	1 cut(s)	207
AcyI	GRCGYC	2 cut(s)	45, 66
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	133
AoxI	GGCC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	44
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	174
BfoI	RGCGCY	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	46
BsaHI	GRCGYC	2 cut(s)	45, 66
BsaJI	CCNNGG	2 cut(s)	40, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	40, 69
BseLI	CCNNNNNNNGG	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	116, 156
BspANI	GGCC	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	40, 69
BssNI	GRCGYC	2 cut(s)	45, 66
BssT1I	CCWWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	151
BstACI	GRCGYC	2 cut(s)	45, 66
BstDSI	CCRYGG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstMCI	CGRYCG	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	69
CfoI	GCGC	1 cut(s)	47
CseI	GACGC	1 cut(s)	74
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	1 cut(s)	39
CviKI_1	RGCY	1 cut(s)	39
DinI	GGCGCC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	40
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	1 cut(s)	137
FaiI	YATR	3 cut(s)	104, 135, 203
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	109
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	39
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	2 cut(s)	45, 66
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	2 cut(s)	81, 185
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	1 cut(s)	95
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	151
Hsp92I	GRCGYC	2 cut(s)	45, 66
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	45
KasI	GGCGCC	1 cut(s)	44
LpnPI	CCDG	2 cut(s)	111, 164
MaeI	CTAG	1 cut(s)	174
MboII	GAAGA	1 cut(s)	198
MluCI	AATT	3 cut(s)	4, 105, 207
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	2 cut(s)	16, 155
MseI	TTAA	1 cut(s)	211
NarI	GGCGCC	1 cut(s)	45
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	137
PciI	ACATGT	1 cut(s)	133
PleI	GAGTC	1 cut(s)	92
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	92
PscI	ACATGT	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	211
SchI	GAGTC	1 cut(s)	93
SetI	ASST	4 cut(s)	58, 100, 166, 183
SfoI	GGCGCC	1 cut(s)	46
Sse9I	AATT	3 cut(s)	4, 105, 207
SsiI	CCGC	2 cut(s)	116, 156
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	87, 160
TasI	AATT	3 cut(s)	4, 105, 207
Tru1I	TTAA	1 cut(s)	211
Tru9I	TTAA	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	22
XapI	RAATTY	1 cut(s)	207
XbaI	TCTAGA	1 cut(s)	173
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.