Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Forward (+)

62254229 .. 62254639

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG394000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTCAAGTCACCGAAACCCTCAGGGCAACACCAATAGGCAAGCCGGAGGAAGCAAGGGTTTCGCCAAAACCCAAAAGGTCTTCGTCCCCAAAAATCAAGGCCAGAATTGTCCCAAAAGCCCTAAATCCCCAAATCCCACGCTCTCTGCCTCCCTCCGGCAATCGCTGTCCCAGCCGTCCAATGCCGAAGCTTCAAGCGCCGCTGCTTCCGCGCCGCCGGAGAGTAGTAGTAGGGTTCGGATGGGAGAGAGAGGCGAGTGGGTGTCGACCAAGGGAAATTTCGTGAATTACTTGCTCCAAGATAGGCGGTTGCCGCTGGCCTCGGCGCCGACGGAGGTGGATTGGATGCCGTGGAGTCTCAGAGAGTCGTCGATCTTCTCAATAGAGAGCTTTCTCGATTGCTCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

136

Amino Acids

14.74

Weight (kDa)

9.82

Isoelectric Point (pI)

64.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	266
AccII	CGCG	1 cut(s)	212
AciI	CCGC	5 cut(s)	201, 210, 215, 307, 314
AcsI	RAATTY	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	3 cut(s)	191, 390, 408
AluI	AGCT	3 cut(s)	191, 390, 408
Alw26I	GTCTC	1 cut(s)	362
AoxI	GGCC	2 cut(s)	100, 318
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	277
AspLEI	GCGC	3 cut(s)	200, 214, 328
AxyI	CCTNAGG	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	235
BceAI	ACGGC	2 cut(s)	160, 334
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcoDI	GTCTC	1 cut(s)	362
BfoI	RGCGCY	2 cut(s)	201, 329
BisI	GCNGC	4 cut(s)	201, 204, 215, 314
BlsI	GCNGC	4 cut(s)	202, 205, 216, 315
BmiI	GGNNCC	1 cut(s)	327
BmsI	GCATC	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	388
BsaHI	GRCGYC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	270, 321, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse21I	CCTNAGG	1 cut(s)	21
BseDI	CCNNGG	3 cut(s)	270, 321, 350
BseGI	GGATG	2 cut(s)	246, 351
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	35, 373
BseXI	GCAGC	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	102, 320
BshNI	GGYRCC	1 cut(s)	325
BsiSI	CCGG	3 cut(s)	45, 157, 218
BslFI	GGGAC	3 cut(s)	71, 96, 154
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	3 cut(s)	71, 96, 154
BsnI	GGCC	2 cut(s)	102, 320
Bsp143I	GATC	1 cut(s)	372
BspACI	CCGC	5 cut(s)	201, 210, 215, 307, 314
BspANI	GGCC	2 cut(s)	102, 320
BspCNI	CTCAG	2 cut(s)	34, 372
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	325
BssECI	CCNNGG	3 cut(s)	270, 321, 350
BssMI	GATC	1 cut(s)	372
BssNI	GRCGYC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	42, 318
BstDEI	CTNAG	2 cut(s)	21, 359
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	246, 351
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	2 cut(s)	201, 329
BstHHI	GCGC	3 cut(s)	200, 214, 328
BstKTI	GATC	1 cut(s)	375
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 197, 209, 313
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	102, 320
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	246, 351
Cac8I	GCNNGC	2 cut(s)	42, 318
CfoI	GCGC	3 cut(s)	200, 214, 328
CviJI	RGCY	8 cut(s)	44, 102, 120, 175, 191, 320, 390, 408
CviKI_1	RGCY	8 cut(s)	44, 102, 120, 175, 191, 320, 390, 408
DdeI	CTNAG	2 cut(s)	21, 359
DinI	GGCGCC	1 cut(s)	327
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	270
Eco81I	CCTNAGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	270
EgeI	GGCGCC	1 cut(s)	327
EheI	GGCGCC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	270
FaqI	GGGAC	3 cut(s)	71, 96, 154
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	4 cut(s)	201, 204, 215, 314
FokI	GGATG	2 cut(s)	253, 358
Fsp4HI	GCNGC	4 cut(s)	201, 204, 215, 314
GlaI	GCGC	3 cut(s)	199, 213, 327
GluI	GCNGC	4 cut(s)	201, 204, 215, 314
GsaI	CCCAGC	1 cut(s)	175
HaeII	RGCGCY	2 cut(s)	201, 329
HaeIII	GGCC	2 cut(s)	102, 320
HapII	CCGG	3 cut(s)	45, 157, 218
HhaI	GCGC	3 cut(s)	200, 214, 328
Hin1I	GRCGYC	1 cut(s)	326
Hin6I	GCGC	3 cut(s)	198, 212, 326
HinP1I	GCGC	3 cut(s)	198, 212, 326
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	2 cut(s)	355, 365
HpaII	CCGG	3 cut(s)	45, 157, 218
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	240, 362
Hpy188III	TCNNGA	2 cut(s)	283, 395
Hpy8I	GTNNAC	1 cut(s)	267
Hpy99I	CGWCG	2 cut(s)	334, 373
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 197, 209, 313
HpyF3I	CTNAG	2 cut(s)	21, 359
Hsp92I	GRCGYC	1 cut(s)	326
HspAI	GCGC	3 cut(s)	198, 212, 326
KasI	GGCGCC	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	7 cut(s)	8, 58, 116, 170, 185, 231, 302
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	2 cut(s)	73, 367
MluCI	AATT	3 cut(s)	106, 277, 286
Mly113I	GGCGCC	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	364, 374
MnlI	CCTC	7 cut(s)	30, 41, 160, 164, 245, 328, 331
MspA1I	CMGCKG	2 cut(s)	203, 316
MspI	CCGG	3 cut(s)	45, 157, 218
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	4 cut(s)	172, 197, 209, 313
NarI	GGCGCC	1 cut(s)	326
NdeII	GATC	1 cut(s)	372
NlaIV	GGNNCC	1 cut(s)	327
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	202, 205, 216, 315
PleI	GAGTC	2 cut(s)	363, 373
PluTI	GGCGCC	1 cut(s)	329
PpsI	GAGTC	2 cut(s)	363, 373
PspFI	CCCAGC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	327
SalI	GTCGAC	1 cut(s)	265
SatI	GCNGC	4 cut(s)	201, 204, 215, 314
Sau3AI	GATC	1 cut(s)	372
SchI	GAGTC	2 cut(s)	364, 374
SetI	ASST	5 cut(s)	81, 193, 339, 392, 410
SfaNI	GCATC	1 cut(s)	336
SfoI	GGCGCC	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	3 cut(s)	106, 277, 286
SsiI	CCGC	5 cut(s)	201, 210, 215, 307, 314
SspDI	GGCGCC	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	270
TaqI	TCGA	3 cut(s)	266, 371, 396
TasI	AATT	3 cut(s)	106, 277, 286
TauI	GCSGC	3 cut(s)	203, 217, 316
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	8
TspGWI	ACGGA	1 cut(s)	347
XapI	RAATTY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.