pycom08g06170
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0002896
Physical Location & Seq
Reverse (-)
4729234 .. 4730344
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 843 bp
ATGGGACGCACTCCATGCTGTGACAAAGAGAACGTGAAGAGAGGTCCGTGGTCTCCGGAAGAAGACGCAGCTCTCAAGTCCTACCTCCAGTCTCATGGCAGTGATGGCACCGCCAGCAATTGGATTCATCTCCCCAAAAAAGCTGGCCTGAGGCGGTGCGGGAAGAGCTGCCGTCTGCGGTGGCTGAACTATCTGAGGCCAGACATCAAACACGGTGGCTTCACTGAGGAGGAGGACAGCATTATCTGCAACCTCTACAACCAGATGGGAAGCCGATGGTCAGTCATTGCTTCTTACATGCCTGGAAGAACAGACAATGATGTGAAGAACTACTGGAACACCAAATTAAAGAAGAAGCTTTTGGGAGGAAAGATAAAGAATATCAGCAGCAGAGAGCCCACAGTTGCAAACAATGCCAATTTTTCTGGAATCCCAGAAGCCGAGAAACCCCAAGACTCTACCTTTTGGACTTCCCAAACCCAAGTTCCATCCACATTGCAGATGCTATATGATGTGAATTCTGGACTGAGTGCAGATAACCAGACCATGAGCTTAAACCCTGATCAGTTATACAACCCCAAGCTGTCGGGTTTTTCGGATTTCGGTGCAAGGTCAAGGGGGAGTTACAGCACTACTGTTTCATTGTCTCAGGAGGGATCAAGCGTTTCGGATTCATCTTCCATAGCTGGGAATCGTTATCTTGATCAGGATTATGGGTTTTTGATGGATTATGGATTTGGTGTGGCTTATGATAATAATGTCAACCATTATGGCATGTGTTTTGGAGACAAAACCAGTGAAGTTGGTCCAACTGGATGCACAGATTTTGGTGATTTCTTTTGA

Protein Analysis

281

Amino Acids

31.08

Weight (kDa)

6.43

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 65 1.9e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 79 8.2e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 72 - 114 4.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 74 - 120 1.1e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 4 cut(s) 111, 154, 159, 178
AclWI GGATC 1 cut(s) 664
AcsI RAATTY 1 cut(s) 517
AfiI CCNNNNNNNGG 2 cut(s) 120, 687
AjnI CCWGG 1 cut(s) 301
AjuI GAANNNNNNNTTGG 4 cut(s) 344, 376, 468, 500
AluBI AGCT 7 cut(s) 71, 143, 168, 358, 552, 583, 686
AluI AGCT 7 cut(s) 71, 143, 168, 358, 552, 583, 686
Alw26I GTCTC 4 cut(s) 57, 96, 651, 780
AlwI GGATC 1 cut(s) 664
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 2 cut(s) 145, 197
ApeKI GCWGC 3 cut(s) 68, 168, 387
ApoI RAATTY 1 cut(s) 517
AspS9I GGNCC 2 cut(s) 44, 806
AsuHPI GGTGA 1 cut(s) 842
AvaII GGWCC 2 cut(s) 44, 806
AxyI CCTNAGG 1 cut(s) 149
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 80, 155, 399
BccI CCATC 5 cut(s) 98, 259, 270, 496, 718
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 303
BclI TGATCA 2 cut(s) 562, 703
BcoDI GTCTC 4 cut(s) 57, 96, 651, 780
BisI GCNGC 3 cut(s) 69, 169, 388
BlsI GCNGC 3 cut(s) 70, 170, 389
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 2 cut(s) 44, 806
BmgT120I GGNCC 2 cut(s) 44, 806
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 492, 806
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 687
Bse1I ACTGG 4 cut(s) 88, 338, 795, 817
Bse21I CCTNAGG 1 cut(s) 149
Bse3DI GCAATG 2 cut(s) 285, 494
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 2 cut(s) 488, 821
BseLI CCNNNNNNNGG 2 cut(s) 120, 687
BseMI GCAATG 2 cut(s) 285, 494
BseMII CTCAG 5 cut(s) 140, 185, 216, 518, 662
BseNI ACTGG 4 cut(s) 88, 338, 795, 817
BseRI GAGGAG 2 cut(s) 242, 245
BseXI GCAGC 3 cut(s) 80, 155, 399
BseYI CCCAGC 1 cut(s) 686
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 2 cut(s) 147, 199
BshNI GGYRCC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 120, 687
BsmAI GTCTC 4 cut(s) 57, 96, 651, 780
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 147, 199
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 399
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 3 cut(s) 562, 656, 703
BspACI CCGC 4 cut(s) 111, 154, 159, 178
BspANI GGCC 2 cut(s) 147, 199
BspCNI CTCAG 5 cut(s) 141, 186, 217, 519, 661
BspEI TCCGGA 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 1 cut(s) 664
BspQI GCTCTTC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 2 cut(s) 285, 494
BsrI ACTGG 4 cut(s) 88, 338, 795, 817
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 3 cut(s) 562, 656, 703
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 3 cut(s) 215, 403, 637
Bst6I CTCTTC 2 cut(s) 32, 158
BstAPI GCANNNNNTGC 3 cut(s) 15, 246, 413
BstC8I GCNNGC 2 cut(s) 115, 145
BstDEI CTNAG 5 cut(s) 149, 194, 225, 527, 648
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 488, 821
BstKTI GATC 3 cut(s) 565, 659, 706
BstMAI GTCTC 4 cut(s) 57, 96, 651, 780
BstMBI GATC 3 cut(s) 562, 656, 703
BstMWI GCNNNNNNNGC 6 cut(s) 15, 105, 114, 165, 246, 413
BstNI CCWGG 1 cut(s) 303
BstNSI RCATGY 2 cut(s) 301, 778
BstSCI CCNGG 1 cut(s) 301
BstV1I GCAGC 3 cut(s) 80, 155, 399
BstV2I GAAGAC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 95
Bsu36I CCTNAGG 1 cut(s) 149
BsuRI GGCC 2 cut(s) 147, 199
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 488, 821
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 3 cut(s) 106, 222, 802
Cac8I GCNNGC 2 cut(s) 115, 145
Cfr13I GGNCC 2 cut(s) 44, 806
CseI GACGC 2 cut(s) 15, 74
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 5 cut(s) 15, 95, 298, 547, 775
DdeI CTNAG 5 cut(s) 149, 194, 225, 527, 648
DpnI GATC 3 cut(s) 564, 658, 705
DpnII GATC 3 cut(s) 562, 656, 703
Eam1104I CTCTTC 2 cut(s) 32, 158
EarI CTCTTC 2 cut(s) 32, 158
Eco24I GRGCYC 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 44, 806
Eco81I CCTNAGG 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 399
FaeI CATG 5 cut(s) 18, 98, 301, 550, 778
FaqI GGGAC 1 cut(s) 18
FatI CATG 5 cut(s) 14, 94, 297, 546, 774
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 2 cut(s) 562, 703
Fnu4HI GCNGC 3 cut(s) 69, 169, 388
FokI GGATG 2 cut(s) 475, 828
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 3 cut(s) 69, 169, 388
GluI GCNGC 3 cut(s) 69, 169, 388
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 2 cut(s) 147, 199
HapII CCGG 1 cut(s) 56
HgaI GACGC 2 cut(s) 15, 74
Hin1II CATG 5 cut(s) 18, 98, 301, 550, 778
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 5 cut(s) 124, 429, 455, 671, 691
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 1 cut(s) 763
Hpy188I TCNGA 3 cut(s) 195, 598, 670
Hpy188III TCNNGA 6 cut(s) 56, 426, 522, 650, 701, 707
Hpy8I GTNNAC 1 cut(s) 763
HpyCH4III ACNGT 3 cut(s) 215, 403, 637
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 6 cut(s) 249, 407, 499, 533, 608, 819
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 105, 114, 165, 246, 413
HpyF3I CTNAG 5 cut(s) 149, 194, 225, 527, 648
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 5 cut(s) 18, 98, 301, 550, 778
Kpn2I TCCGGA 1 cut(s) 55
Ksp22I TGATCA 2 cut(s) 562, 703
Kzo9I GATC 3 cut(s) 562, 656, 703
LguI GCTCTTC 1 cut(s) 158
Lsp1109I GCAGC 3 cut(s) 80, 155, 399
LweI GCATC 2 cut(s) 492, 806
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 20, 623
MalI GATC 3 cut(s) 564, 658, 705
MboI GATC 3 cut(s) 562, 656, 703
MboII GAAGA 8 cut(s) 49, 71, 74, 175, 318, 337, 364, 669
MfeI CAATTG 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 4 cut(s) 118, 344, 418, 517
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 833
MroI TCCGGA 1 cut(s) 55
MseI TTAA 2 cut(s) 347, 554
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 303
MunI CAATTG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 6 cut(s) 15, 105, 114, 165, 246, 413
NdeII GATC 3 cut(s) 562, 656, 703
NlaIII CATG 5 cut(s) 18, 98, 301, 550, 778
NlaIV GGNNCC 1 cut(s) 109
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 2 cut(s) 301, 778
PciSI GCTCTTC 1 cut(s) 158
PfeI GAWTC 4 cut(s) 124, 429, 671, 691
PflMI CCANNNNNTGG 1 cut(s) 120
PkrI GCNGC 3 cut(s) 70, 170, 389
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 686
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 2 cut(s) 44, 806
RseI CAYNNNNRTG 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 158
SaqAI TTAA 2 cut(s) 347, 554
SatI GCNGC 3 cut(s) 69, 169, 388
Sau3AI GATC 3 cut(s) 562, 656, 703
Sau96I GGNCC 2 cut(s) 44, 806
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 399
SfaNI GCATC 2 cut(s) 492, 806
SinI GGWCC 2 cut(s) 44, 806
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 4 cut(s) 118, 344, 418, 517
SsiI CCGC 4 cut(s) 111, 154, 159, 178
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 3 cut(s) 215, 403, 637
TaiI ACGT 1 cut(s) 36
TasI AATT 4 cut(s) 118, 344, 418, 517
TfiI GAWTC 4 cut(s) 124, 429, 671, 691
Tru1I TTAA 2 cut(s) 347, 554
Tru9I TTAA 2 cut(s) 347, 554
TscAI CASTG 3 cut(s) 106, 229, 802
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 3 cut(s) 68, 168, 387
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 116, 630, 663
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 3 cut(s) 106, 229, 802
Van91I CCANNNNNTGG 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 44, 806
XapI RAATTY 1 cut(s) 517
XceI RCATGY 2 cut(s) 301, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.