pycom10g06970

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0001920
Physical Location & Seq
Reverse (-)
8160644 .. 8163863
3220 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1173 bp
ATGTCTTGTCCAATAATAACAAAGAACGAGAAATTGCCAGATTCTTTGCACGCAATTTCAACCTTTTTTGAAAATTCCCCCTTCCTCCCTCCCCTCTCCCTCATTCAGACTCGCGCGTACCGAGGTTTTGCCACTTTCTTTTGCAAGAGGTGCTTTCGGCTCCACAGTCCACCATTTCCAATGGTGGTTCGGAGAAATCGACGCGGAGGCGACTCCGAAGAGGGCGGCGGAGCAACCGTAGAGAATGGAAGTGCGGGGGTTTCAGGGTACGAGCACTTCAGGGACCAAAAGATCAGAGAGAACAAGGAGAGATTGCAGAAGCTGGGAATTTTGGACCTTGCCAAGAAGCTCAAGACCGAAGCTGCCGCCCCAAAACGTCCCTACCGACCCAAAACCCACAACCCACTTCCTAATCCTGGGTCCCCCAGGCGCTCTTCCAGGTTGAAGAGTGTGGCTCCAGTAGATTATGTGGAAAAGAAGAAAAACGAGAGCTCAAAGAGAAAGAGTGTTGAAATTTTTATAAAGGAAGGTTCAAAGCCAGAGATTTATACAGAGGAACATGAGAAGCTGTTGGGGGATTGTGTCGAAAGCTGGGAGCTTGGTGTTGATGGCTATGGTGAGGATCGGAAGCGCATTTACGATCCGGTTAATGGAGAAACTTGCCATCAATGCAGGCAGAAAACTCTTGGGCATCATACAAAGTGCTGGAAATGTGACTTGGTCCAAGGGCAGTTTTGTGGAGATTGCTTATACATGAGATATGGAGAGAATGTGATTGAAGCCAATGAAAATCCTGGTTGGACATGTCCTGTTTGTCGGGGCATCTGCAACTGTAGTCTCTGCCGTCAAGCAAAGGGGTGGGAACCCACCGGTAATCTGTATAGAAAGGTCATAAAACTGGGTTACAAGTCTGTGGCACACTATCTTATCCAAACCCGCCGTTCCCCAACAAACTCAGAGACCACAGGTGAAGAAGTTGTAGCAGAGGGATCAACTCCTTCAGTGGAACCCTCTTCACATGATGAATCTTCAGGAACAGGCAATGACCTTGATACTAGCAAGCATGTTGATGACGATGATGTGGGCAACGTAGATGCTGTTGCTGCTGGTGATGCAGTTGACGGCGAGGCAAAGAAAAAGCTGAGAAGGAATACAAGGCTGAGCAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

391

Amino Acids

43.62

Weight (kDa)

8.69

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 213 - 309 6.7e-40 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 521
AccII CGCG 3 cut(s) 114, 116, 204
AciI CCGC 6 cut(s) 204, 225, 228, 254, 366, 937
AclWI GGATC 3 cut(s) 630, 635, 997
AcsI RAATTY 3 cut(s) 73, 327, 513
AcuI CTGAAG 3 cut(s) 262, 984, 1014
AfaI GTAC 2 cut(s) 119, 269
AfiI CCNNNNNNNGG 2 cut(s) 416, 650
AflIII ACRYGT 1 cut(s) 803
AgeI ACCGGT 1 cut(s) 869
AgsI TTSAA 6 cut(s) 60, 71, 445, 512, 534, 779
AjnI CCWGG 4 cut(s) 415, 425, 437, 793
AjuI GAANNNNNNNTTGG 2 cut(s) 701, 733
AluBI AGCT 8 cut(s) 322, 349, 362, 492, 568, 591, 598, 1141
AluI AGCT 8 cut(s) 322, 349, 362, 492, 568, 591, 598, 1141
Alw21I GWGCWC 2 cut(s) 276, 494
Alw26I GTCTC 2 cut(s) 842, 953
AlwI GGATC 3 cut(s) 630, 635, 997
AlwNI CAGNNNCTG 1 cut(s) 322
ApeKI GCWGC 2 cut(s) 362, 1103
ApoI RAATTY 3 cut(s) 73, 327, 513
AsiGI ACCGGT 1 cut(s) 869
AspLEI GCGC 3 cut(s) 116, 432, 633
AspS9I GGNCC 4 cut(s) 283, 334, 420, 721
AsuHPI GGTGA 3 cut(s) 629, 980, 1121
AvaII GGWCC 4 cut(s) 283, 334, 420, 721
BanII GRGCYC 1 cut(s) 494
BarI GAAGNNNNNNTAC 4 cut(s) 260, 292, 620, 652
Bbv12I GWGCWC 2 cut(s) 276, 494
BbvI GCAGC 2 cut(s) 349, 1090
BccI CCATC 2 cut(s) 602, 672
BceAI ACGGC 3 cut(s) 828, 924, 1138
BciT130I CCWGG 4 cut(s) 417, 427, 439, 795
BcoDI GTCTC 2 cut(s) 842, 953
BfaI CTAG 1 cut(s) 1056
BfmI CTRYAG 1 cut(s) 832
BfoI RGCGCY 1 cut(s) 433
BisI GCNGC 4 cut(s) 226, 363, 366, 1104
BlpI GCTNAGC 1 cut(s) 1160
BlsI GCNGC 4 cut(s) 227, 364, 367, 1105
Bme1390I CCNGG 4 cut(s) 417, 427, 439, 795
Bme18I GGWCC 4 cut(s) 283, 334, 420, 721
BmgT120I GGNCC 4 cut(s) 283, 334, 420, 721
BmiI GGNNCC 7 cut(s) 161, 284, 421, 422, 456, 864, 1008
BmrFI CCNGG 4 cut(s) 417, 427, 439, 795
BmrI ACTGGG 1 cut(s) 908
BmsI GCATC 4 cut(s) 700, 831, 1084, 1102
BmuI ACTGGG 1 cut(s) 908
BplI GAGNNNNNCTC 2 cut(s) 439, 471
BpmI CTGGAG 1 cut(s) 441
Bpu1102I GCTNAGC 1 cut(s) 1160
BpuEI CTTGAG 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 953
BsaJI CCNNGG 4 cut(s) 121, 416, 425, 724
BsaWI WCCGGW 2 cut(s) 643, 869
BsaXI ACNNNNNCTCC 4 cut(s) 222, 252, 756, 786
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 650
Bse118I RCCGGY 1 cut(s) 869
Bse1I ACTGG 2 cut(s) 458, 903
Bse3DI GCAATG 1 cut(s) 1048
BseBI CCWGG 4 cut(s) 417, 427, 439, 795
BseDI CCNNGG 4 cut(s) 121, 416, 425, 724
BseLI CCNNNNNNNGG 2 cut(s) 416, 650
BseMI GCAATG 1 cut(s) 1048
BseMII CTCAG 3 cut(s) 969, 1133, 1151
BseNI ACTGG 2 cut(s) 458, 903
BseXI GCAGC 2 cut(s) 349, 1090
BseYI CCCAGC 2 cut(s) 322, 591
Bsh1236I CGCG 3 cut(s) 114, 116, 204
BshTI ACCGGT 1 cut(s) 869
BsiHKAI GWGCWC 2 cut(s) 276, 494
BsiSI CCGG 2 cut(s) 644, 870
BslFI GGGAC 3 cut(s) 296, 363, 406
BslI CCNNNNNNNGG 2 cut(s) 416, 650
BsmAI GTCTC 2 cut(s) 842, 953
BsmFI GGGAC 3 cut(s) 296, 363, 406
Bso31I GGTCTC 1 cut(s) 953
Bsp1286I GDGCHC 2 cut(s) 276, 494
Bsp143I GATC 4 cut(s) 291, 622, 640, 989
Bsp1720I GCTNAGC 1 cut(s) 1160
BspACI CCGC 6 cut(s) 204, 225, 228, 254, 366, 937
BspCNI CTCAG 3 cut(s) 968, 1134, 1152
BspFNI CGCG 3 cut(s) 114, 116, 204
BspLI GGNNCC 7 cut(s) 161, 284, 421, 422, 456, 864, 1008
BspPI GGATC 3 cut(s) 630, 635, 997
BspQI GCTCTTC 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 953
BsrDI GCAATG 1 cut(s) 1048
BsrFI RCCGGY 1 cut(s) 869
BsrI ACTGG 2 cut(s) 458, 903
BssAI RCCGGY 1 cut(s) 869
BssECI CCNNGG 4 cut(s) 121, 416, 425, 724
BssMI GATC 4 cut(s) 291, 622, 640, 989
BssT1I CCWWGG 1 cut(s) 724
Bst2UI CCWGG 4 cut(s) 417, 427, 439, 795
Bst4CI ACNGT 3 cut(s) 167, 238, 833
Bst6I CTCTTC 4 cut(s) 213, 439, 440, 1018
BstAPI GCANNNNNTGC 1 cut(s) 150
BstC8I GCNNGC 3 cut(s) 51, 674, 1061
BstDEI CTNAG 3 cut(s) 955, 1142, 1160
BstFNI CGCG 3 cut(s) 114, 116, 204
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 3 cut(s) 116, 432, 633
BstKTI GATC 4 cut(s) 294, 625, 643, 992
BstMAI GTCTC 2 cut(s) 842, 953
BstMBI GATC 4 cut(s) 291, 622, 640, 989
BstMWI GCNNNNNNNGC 4 cut(s) 150, 669, 1103, 1112
BstNI CCWGG 4 cut(s) 417, 427, 439, 795
BstNSI RCATGY 2 cut(s) 807, 1067
BstSCI CCNGG 4 cut(s) 415, 425, 437, 793
BstSFI CTRYAG 1 cut(s) 832
BstUI CGCG 3 cut(s) 114, 116, 204
BstV1I GCAGC 2 cut(s) 349, 1090
BtsIMutI CAGTG 1 cut(s) 1008
Cac8I GCNNGC 3 cut(s) 51, 674, 1061
CaiI CAGNNNCTG 1 cut(s) 322
CfoI GCGC 3 cut(s) 116, 432, 633
Cfr10I RCCGGY 1 cut(s) 869
Cfr13I GGNCC 4 cut(s) 283, 334, 420, 721
CseI GACGC 1 cut(s) 210
Csp6I GTAC 2 cut(s) 118, 268
CspAI ACCGGT 1 cut(s) 869
CviAII CATG 5 cut(s) 560, 754, 804, 1019, 1064
CviQI GTAC 2 cut(s) 118, 268
DdeI CTNAG 3 cut(s) 955, 1142, 1160
DpnI GATC 4 cut(s) 293, 624, 642, 991
DpnII GATC 4 cut(s) 291, 622, 640, 989
Eam1104I CTCTTC 4 cut(s) 213, 439, 440, 1018
EarI CTCTTC 4 cut(s) 213, 439, 440, 1018
EciI GGCGGA 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 492
Eco130I CCWWGG 1 cut(s) 724
Eco24I GRGCYC 1 cut(s) 494
Eco31I GGTCTC 1 cut(s) 953
Eco47I GGWCC 4 cut(s) 283, 334, 420, 721
Eco53kI GAGCTC 1 cut(s) 492
Eco57I CTGAAG 3 cut(s) 262, 984, 1014
EcoICRI GAGCTC 1 cut(s) 492
EcoO109I RGGNCCY 1 cut(s) 420
EcoRII CCWGG 4 cut(s) 415, 425, 437, 793
EcoT14I CCWWGG 1 cut(s) 724
EcoT38I GRGCYC 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 724
FaeI CATG 5 cut(s) 563, 757, 807, 1022, 1067
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 3 cut(s) 296, 363, 406
FatI CATG 5 cut(s) 559, 753, 803, 1018, 1063
FauI CCCGC 2 cut(s) 247, 944
Fnu4HI GCNGC 4 cut(s) 226, 363, 366, 1104
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 4 cut(s) 226, 363, 366, 1104
FspBI CTAG 1 cut(s) 1056
GlaI GCGC 3 cut(s) 115, 431, 632
GluI GCNGC 4 cut(s) 226, 363, 366, 1104
GsaI CCCAGC 2 cut(s) 326, 595
GsuI CTGGAG 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 433
HapII CCGG 2 cut(s) 644, 870
HgaI GACGC 1 cut(s) 210
HhaI GCGC 3 cut(s) 116, 432, 633
Hin1II CATG 5 cut(s) 563, 757, 807, 1022, 1067
Hin6I GCGC 3 cut(s) 114, 430, 631
HinP1I GCGC 3 cut(s) 114, 430, 631
HincII GTYRAC 1 cut(s) 1120
HindII GTYRAC 1 cut(s) 1120
HinfI GANTC 4 cut(s) 41, 109, 212, 1025
HpaII CCGG 2 cut(s) 644, 870
HphI GGTGA 3 cut(s) 629, 980, 1121
Hpy166II GTNNAC 2 cut(s) 170, 1120
Hpy188I TCNGA 6 cut(s) 108, 192, 217, 296, 627, 958
Hpy188III TCNNGA 2 cut(s) 352, 1032
Hpy8I GTNNAC 2 cut(s) 170, 1120
Hpy99I CGWCG 1 cut(s) 204
HpyAV CCTTC 4 cut(s) 91, 521, 1008, 1140
HpyCH4III ACNGT 3 cut(s) 167, 238, 833
HpyCH4IV ACGT 2 cut(s) 376, 1089
HpyCH4V TGCA 6 cut(s) 49, 144, 316, 672, 828, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 150, 669, 1103, 1112
HpyF3I CTNAG 3 cut(s) 955, 1142, 1160
HpySE526I ACGT 2 cut(s) 376, 1089
Hsp92II CATG 5 cut(s) 563, 757, 807, 1022, 1067
HspAI GCGC 3 cut(s) 114, 430, 631
KflI GGGWCCC 1 cut(s) 420
Kzo9I GATC 4 cut(s) 291, 622, 640, 989
LguI GCTCTTC 1 cut(s) 439
LmnI GCTCC 4 cut(s) 165, 230, 460, 595
Lsp1109I GCAGC 2 cut(s) 349, 1090
LweI GCATC 4 cut(s) 700, 831, 1084, 1102
MaeI CTAG 1 cut(s) 1056
MaeII ACGT 2 cut(s) 376, 1089
MaeIII GTNAC 2 cut(s) 713, 902
MalI GATC 4 cut(s) 293, 624, 642, 991
MboI GATC 4 cut(s) 291, 622, 640, 989
MboII GAAGA 7 cut(s) 230, 426, 457, 490, 983, 1005, 1020
MhlI GDGCHC 2 cut(s) 276, 494
MluCI AATT 5 cut(s) 32, 54, 73, 327, 513
MlyI GAGTC 2 cut(s) 103, 206
MmeI TCCRAC 1 cut(s) 779
MseI TTAA 2 cut(s) 648, 1171
MslI CAYNNNNRTG 1 cut(s) 1068
MspI CCGG 2 cut(s) 644, 870
MspR9I CCNGG 4 cut(s) 417, 427, 439, 795
MvaI CCWGG 4 cut(s) 417, 427, 439, 795
MvnI CGCG 3 cut(s) 114, 116, 204
MwoI GCNNNNNNNGC 4 cut(s) 150, 669, 1103, 1112
NdeII GATC 4 cut(s) 291, 622, 640, 989
NlaIII CATG 5 cut(s) 563, 757, 807, 1022, 1067
NlaIV GGNNCC 7 cut(s) 161, 284, 421, 422, 456, 864, 1008
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 2 cut(s) 807, 1067
PciI ACATGT 1 cut(s) 803
PciSI GCTCTTC 1 cut(s) 439
PcsI WCGNNNNNNNCGW 3 cut(s) 118, 196, 382
PfeI GAWTC 2 cut(s) 41, 1025
PflFI GACNNNGTC 1 cut(s) 719
PinAI ACCGGT 1 cut(s) 869
PkrI GCNGC 4 cut(s) 227, 364, 367, 1105
PleI GAGTC 2 cut(s) 103, 206
PpsI GAGTC 2 cut(s) 103, 206
PpuMI RGGWCCY 1 cut(s) 420
PscI ACATGT 1 cut(s) 803
PsiI TTATAA 1 cut(s) 521
Psp124BI GAGCTC 1 cut(s) 494
Psp5II RGGWCCY 1 cut(s) 420
Psp6I CCWGG 4 cut(s) 415, 425, 437, 793
PspFI CCCAGC 2 cut(s) 322, 591
PspGI CCWGG 4 cut(s) 415, 425, 437, 793
PspN4I GGNNCC 7 cut(s) 161, 284, 421, 422, 456, 864, 1008
PspPI GGNCC 4 cut(s) 283, 334, 420, 721
PspPPI RGGWCCY 1 cut(s) 420
PstNI CAGNNNCTG 1 cut(s) 322
PsyI GACNNNGTC 1 cut(s) 719
RsaI GTAC 2 cut(s) 119, 269
RsaNI GTAC 2 cut(s) 118, 268
RseI CAYNNNNRTG 1 cut(s) 1068
SacI GAGCTC 1 cut(s) 494
SapI GCTCTTC 1 cut(s) 439
SaqAI TTAA 2 cut(s) 648, 1171
SatI GCNGC 4 cut(s) 226, 363, 366, 1104
Sau3AI GATC 4 cut(s) 291, 622, 640, 989
Sau96I GGNCC 4 cut(s) 283, 334, 420, 721
SchI GAGTC 2 cut(s) 103, 206
ScrFI CCNGG 4 cut(s) 417, 427, 439, 795
SduI GDGCHC 2 cut(s) 276, 494
SfaNI GCATC 4 cut(s) 700, 831, 1084, 1102
SfcI CTRYAG 1 cut(s) 832
SinI GGWCC 4 cut(s) 283, 334, 420, 721
SmiMI CAYNNNNRTG 1 cut(s) 1068
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 5 cut(s) 32, 54, 73, 327, 513
SsiI CCGC 6 cut(s) 204, 225, 228, 254, 366, 937
SspMI CTAG 1 cut(s) 1056
SstI GAGCTC 1 cut(s) 494
StyD4I CCNGG 4 cut(s) 415, 425, 437, 793
StyI CCWWGG 1 cut(s) 724
TaaI ACNGT 3 cut(s) 167, 238, 833
TaiI ACGT 2 cut(s) 379, 1092
TaqI TCGA 2 cut(s) 199, 585
TaqII GACCGA 1 cut(s) 371
TasI AATT 5 cut(s) 32, 54, 73, 327, 513
TauI GCSGC 2 cut(s) 228, 368
TfiI GAWTC 2 cut(s) 41, 1025
Tru1I TTAA 2 cut(s) 648, 1171
Tru9I TTAA 2 cut(s) 648, 1171
TscAI CASTG 1 cut(s) 1008
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 2 cut(s) 362, 1103
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 2 cut(s) 801, 1038
TspRI CASTG 1 cut(s) 1008
Tth111I GACNNNGTC 1 cut(s) 719
VpaK11BI GGWCC 4 cut(s) 283, 334, 420, 721
XapI RAATTY 3 cut(s) 73, 327, 513
XceI RCATGY 2 cut(s) 807, 1067
XspI CTAG 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.