pycom10g10980

polyamine transporter At1g31830 isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
14525051 .. 14527195
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1443 bp
ATGAAACATAGAAACTCACCTATTAGGCAAATGTTGGACAACAATATTGCTGAGTATTCTGGTTTGGGGGAAGGATCCTCTCACGACTTACATAAGTATCAAAAGGTTTCAATCATACCTCTTGTGTTCTTGATCTTCTACGAGGTCTCAGGAGGTCCATTTGGTGTCGAAGATAGTGTCCAGGCAGCTGGTCCCCTTTTAGCCCTTCTTGGCTTTCTAGTTTTTGCAATCATATGGAGTGTTCCAGAGGCCTTGATAACTGCAGAAATGGGTACTATGTTCCCTGAGAATGGGGGATATGTCGTTTGGGTCTCATCGGCTTTGGGACCGTACTGGGGCTTTCAGCAAGGATGGGTAAAATGGCTTAGTGGGGTGATTGATAACGCTCTATACCCTGTTCTGTTTCTTGACTATCTCAAATCAGCAATTCCGGCTTTAGAAAGCGGTCTCCCAAGGACAGTTGCCGTGTTGGTTTTGACAGCAATGCTCACTTACATGAACTACAGGGGTTTGACAATAGTGGGTTGGGCAGCTATCTTACTGGGGGTGTTTTCACTTCTTCCTTTCATATTCATGGGATTTATAGCAATCCCCAAACTAAATCCTTCAAATTGGTTTGTGGTAAACCTGGAGACTGTGAATTGGACTTTGTACTTGAACACGCTGTTTTGGAATCTTAATTACTGGGATTCAATTAGTACTCTTGCAGGGGAGGTGGAAAACCCTGGTACAACTCTTCCGAAATCTCTCTTTTATGCCCTTATCTTGGTTGTCGTTGGATACATTTTCCCTCTTCTGATTGGTACCGGAGCTGTTCCAGTTGAACGTGAACTATGGTCAGATGGGTATTTTGCAGATATTGCTAAAATGCTTGGAGGTGTATGGTTAAGAACCTGGGTCCTAGCAGCTTCTGCTTTGTCAAACATGGGTATGTTTGTGGCTGAAATGAGCAGCGACTCGTTTCAACTTTTGGGTATGGCAGAACGTGGGATGCTTCCTTCAATCTTTGCCAAAAGATCTCGTTACGGCACACCGCTTACCGGAATCTTATTCTCTGCGTCCGGTGTGATCTTGCTTTCCTGGTTGAGCTTCCAAGAGATTGTAGCTGCTGAGAACTACTTGTATTGCTTCGGAATGATAATGGAATTCATCGCGTTTGTAAAGTTGAGGATGAAACACCCAGCTGCATCGCGGCCTTTTAAGATACCGGTGGGTACAGTGGGAGCAATTTTCATCTGCATTCCTCCGGCGGTGTTAATCTTTGTAGTTTTAGCTCTTGCTACTCCAAAGGTAATGGCTGTTAGCATCGCTGCGGTGATCATCGGGCTGCTTCTGCAGCCTTGCATCGAGTACACGAAACAAAAGAGGTGGTTTAATTTCTCCACGAATTCTGACCTTCCAGACATCCACAATGCATATGATCAGTATAGTGTTGTAGCATGA

Protein Analysis

481

Amino Acids

52.99

Weight (kDa)

5.8

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 42 - 440 5.1e-39 Amino acid permease
AA_permease PF00324 59 - 443 1.8e-21 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 803
AccB1I GGYRCC 1 cut(s) 803
AccII CGCG 2 cut(s) 1154, 1192
AciI CCGC 5 cut(s) 444, 1034, 1192, 1250, 1313
AclWI GGATC 2 cut(s) 69, 82
AcsI RAATTY 2 cut(s) 1145, 1387
AfaI GTAC 8 cut(s) 274, 332, 653, 700, 730, 805, 1216, 1352
AfiI CCNNNNNNNGG 4 cut(s) 290, 335, 766, 1040
AgeI ACCGGT 1 cut(s) 1207
AgsI TTSAA 7 cut(s) 111, 609, 658, 693, 824, 965, 1002
AjnI CCWGG 5 cut(s) 180, 627, 724, 893, 1079
AluBI AGCT 8 cut(s) 188, 533, 812, 908, 1089, 1106, 1184, 1274
AluI AGCT 8 cut(s) 188, 533, 812, 908, 1089, 1106, 1184, 1274
Alw26I GTCTC 4 cut(s) 151, 316, 452, 626
AlwI GGATC 2 cut(s) 69, 82
AlwNI CAGNNNCTG 1 cut(s) 911
AoxI GGCC 2 cut(s) 249, 1193
ApeKI GCWGC 9 cut(s) 185, 530, 905, 951, 1106, 1184, 1310, 1327, 1336
ApoI RAATTY 2 cut(s) 1145, 1387
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
AsiGI ACCGGT 1 cut(s) 1207
Asp718I GGTACC 1 cut(s) 803
AspS9I GGNCC 4 cut(s) 155, 191, 326, 898
AsuHPI GGTGA 3 cut(s) 9, 385, 1327
AvaII GGWCC 4 cut(s) 155, 191, 326, 898
BaeI ACNNNNGTAYC 2 cut(s) 80, 113
BamHI GGATCC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 803
BbvI GCAGC 9 cut(s) 197, 542, 917, 963, 1093, 1171, 1297, 1314, 1348
BccI CCATC 2 cut(s) 345, 836
BceAI ACGGC 2 cut(s) 449, 1042
BciT130I CCWGG 5 cut(s) 182, 629, 726, 895, 1081
BciVI GTATCC 1 cut(s) 773
BclI TGATCA 2 cut(s) 1317, 1420
BcoDI GTCTC 4 cut(s) 151, 316, 452, 626
BfaI CTAG 2 cut(s) 218, 902
BfmI CTRYAG 3 cut(s) 261, 502, 1334
BfuI GTATCC 1 cut(s) 773
BglII AGATCT 1 cut(s) 1016
BmcAI AGTACT 1 cut(s) 700
Bme1390I CCNGG 5 cut(s) 182, 629, 726, 895, 1081
Bme18I GGWCC 4 cut(s) 155, 191, 326, 898
BmgT120I GGNCC 4 cut(s) 155, 191, 326, 898
BmiI GGNNCC 5 cut(s) 76, 193, 327, 805, 899
BmrFI CCNGG 5 cut(s) 182, 629, 726, 895, 1081
BmrI ACTGGG 3 cut(s) 343, 551, 694
BmsI GCATC 4 cut(s) 981, 1196, 1314, 1353
BmuI ACTGGG 3 cut(s) 343, 551, 694
BpmI CTGGAG 1 cut(s) 650
BsaI GGTCTC 3 cut(s) 151, 316, 452
BsaJI CCNNGG 3 cut(s) 452, 724, 894
BsaWI WCCGGW 4 cut(s) 806, 1040, 1061, 1207
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 335, 766, 1040
Bse118I RCCGGY 1 cut(s) 1207
Bse1I ACTGG 4 cut(s) 338, 546, 689, 818
Bse3DI GCAATG 1 cut(s) 489
BseBI CCWGG 5 cut(s) 182, 629, 726, 895, 1081
BseDI CCNNGG 3 cut(s) 452, 724, 894
BseGI GGATG 4 cut(s) 356, 996, 1176, 1404
BseLI CCNNNNNNNGG 4 cut(s) 290, 335, 766, 1040
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 4 cut(s) 42, 162, 276, 1101
BseNI ACTGG 4 cut(s) 338, 546, 689, 818
BseXI GCAGC 9 cut(s) 197, 542, 917, 963, 1093, 1171, 1297, 1314, 1348
BseYI CCCAGC 1 cut(s) 1180
Bsh1236I CGCG 2 cut(s) 1154, 1192
BshFI GGCC 2 cut(s) 251, 1195
BshNI GGYRCC 1 cut(s) 803
BshTI ACCGGT 1 cut(s) 1207
BsiSI CCGG 6 cut(s) 431, 807, 1041, 1062, 1208, 1247
BslFI GGGAC 2 cut(s) 177, 339
BslI CCNNNNNNNGG 4 cut(s) 290, 335, 766, 1040
BsmAI GTCTC 4 cut(s) 151, 316, 452, 626
BsmFI GGGAC 2 cut(s) 177, 339
BsmI GAATGC 1 cut(s) 1239
BsnI GGCC 2 cut(s) 251, 1195
Bso31I GGTCTC 3 cut(s) 151, 316, 452
Bsp143I GATC 6 cut(s) 74, 132, 1016, 1068, 1317, 1420
BspACI CCGC 5 cut(s) 444, 1034, 1192, 1250, 1313
BspANI GGCC 2 cut(s) 251, 1195
BspCNI CTCAG 4 cut(s) 43, 161, 277, 1102
BspFNI CGCG 2 cut(s) 1154, 1192
BspLI GGNNCC 5 cut(s) 76, 193, 327, 805, 899
BspMAI CTGCAG 2 cut(s) 265, 1338
BspPI GGATC 2 cut(s) 69, 82
BspT107I GGYRCC 1 cut(s) 803
BspTNI GGTCTC 3 cut(s) 151, 316, 452
BsrDI GCAATG 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 1207
BsrI ACTGG 4 cut(s) 338, 546, 689, 818
BssAI RCCGGY 1 cut(s) 1207
BssECI CCNNGG 3 cut(s) 452, 724, 894
BssMI GATC 6 cut(s) 74, 132, 1016, 1068, 1317, 1420
BssT1I CCWWGG 1 cut(s) 452
Bst2UI CCWGG 5 cut(s) 182, 629, 726, 895, 1081
Bst4CI ACNGT 4 cut(s) 330, 460, 637, 1219
Bst6I CTCTTC 2 cut(s) 741, 798
BstAPI GCANNNNNTGC 2 cut(s) 860, 911
BstDEI CTNAG 5 cut(s) 51, 148, 285, 365, 1110
BstF5I GGATG 4 cut(s) 356, 996, 1176, 1404
BstFNI CGCG 2 cut(s) 1154, 1192
BstKTI GATC 6 cut(s) 77, 135, 1019, 1071, 1320, 1423
BstMAI GTCTC 4 cut(s) 151, 316, 452, 626
BstMBI GATC 6 cut(s) 74, 132, 1016, 1068, 1317, 1420
BstMWI GCNNNNNNNGC 5 cut(s) 431, 860, 911, 1333, 1336
BstNI CCWGG 5 cut(s) 182, 629, 726, 895, 1081
BstSCI CCNGG 5 cut(s) 180, 627, 724, 893, 1079
BstSFI CTRYAG 3 cut(s) 261, 502, 1334
BstUI CGCG 2 cut(s) 1154, 1192
BstV1I GCAGC 9 cut(s) 197, 542, 917, 963, 1093, 1171, 1297, 1314, 1348
BstX2I RGATCY 2 cut(s) 74, 1016
BstXI CCANNNNNNTGG 1 cut(s) 188
BstYI RGATCY 2 cut(s) 74, 1016
BsuI GTATCC 1 cut(s) 773
BsuRI GGCC 2 cut(s) 251, 1195
BtgZI GCGATG 3 cut(s) 1135, 1173, 1291
BtsCI GGATG 4 cut(s) 356, 996, 1176, 1404
BtsIMutI CAGTG 1 cut(s) 1224
CaiI CAGNNNCTG 1 cut(s) 911
Cfr10I RCCGGY 1 cut(s) 1207
Cfr13I GGNCC 4 cut(s) 155, 191, 326, 898
CseI GACGC 1 cut(s) 1047
Csp6I GTAC 8 cut(s) 273, 331, 652, 699, 729, 804, 1215, 1351
CspAI ACCGGT 1 cut(s) 1207
CspCI CAANNNNNGTGG 2 cut(s) 1349, 1384
CviAII CATG 4 cut(s) 496, 574, 925, 1440
CviQI GTAC 8 cut(s) 273, 331, 652, 699, 729, 804, 1215, 1351
DdeI CTNAG 5 cut(s) 51, 148, 285, 365, 1110
DpnI GATC 6 cut(s) 76, 134, 1018, 1070, 1319, 1422
DpnII GATC 6 cut(s) 74, 132, 1016, 1068, 1317, 1420
Eam1104I CTCTTC 2 cut(s) 741, 798
EarI CTCTTC 2 cut(s) 741, 798
Eco130I CCWWGG 1 cut(s) 452
Eco147I AGGCCT 1 cut(s) 251
Eco31I GGTCTC 3 cut(s) 151, 316, 452
Eco47I GGWCC 4 cut(s) 155, 191, 326, 898
EcoO109I RGGNCCY 1 cut(s) 898
EcoRI GAATTC 2 cut(s) 1145, 1387
EcoRII CCWGG 5 cut(s) 180, 627, 724, 893, 1079
EcoT14I CCWWGG 1 cut(s) 452
EcoT22I ATGCAT 1 cut(s) 1417
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 4 cut(s) 499, 577, 928, 1443
FaqI GGGAC 2 cut(s) 177, 339
FatI CATG 4 cut(s) 495, 573, 924, 1439
FauNDI CATATG 2 cut(s) 233, 1417
FbaI TGATCA 2 cut(s) 1317, 1420
FokI GGATG 4 cut(s) 363, 1003, 1183, 1391
FspBI CTAG 2 cut(s) 218, 902
GsaI CCCAGC 1 cut(s) 1184
GsuI CTGGAG 1 cut(s) 650
HaeIII GGCC 2 cut(s) 251, 1195
HapII CCGG 6 cut(s) 431, 807, 1041, 1062, 1208, 1247
HgaI GACGC 1 cut(s) 1047
Hin1II CATG 4 cut(s) 499, 577, 928, 1443
HinfI GANTC 4 cut(s) 673, 689, 956, 1044
HpaII CCGG 6 cut(s) 431, 807, 1041, 1062, 1208, 1247
HphI GGTGA 3 cut(s) 9, 385, 1327
Hpy166II GTNNAC 3 cut(s) 625, 830, 1353
Hpy188I TCNGA 5 cut(s) 741, 798, 841, 1133, 1393
Hpy188III TCNNGA 6 cut(s) 83, 130, 150, 245, 407, 1400
Hpy8I GTNNAC 3 cut(s) 625, 830, 1353
HpyAV CCTTC 5 cut(s) 65, 215, 615, 1008, 1406
HpyCH4III ACNGT 4 cut(s) 330, 460, 637, 1219
HpyCH4IV ACGT 2 cut(s) 826, 985
HpyCH4V TGCA 9 cut(s) 227, 263, 707, 854, 1187, 1239, 1336, 1344, 1415
HpyF10VI GCNNNNNNNGC 5 cut(s) 431, 860, 911, 1333, 1336
HpyF3I CTNAG 5 cut(s) 51, 148, 285, 365, 1110
HpySE526I ACGT 2 cut(s) 826, 985
Hsp92II CATG 4 cut(s) 499, 577, 928, 1443
KpnI GGTACC 1 cut(s) 807
Ksp22I TGATCA 2 cut(s) 1317, 1420
Kzo9I GATC 6 cut(s) 74, 132, 1016, 1068, 1317, 1420
LmnI GCTCC 2 cut(s) 809, 1223
Lsp1109I GCAGC 9 cut(s) 197, 542, 917, 963, 1093, 1171, 1297, 1314, 1348
LweI GCATC 4 cut(s) 981, 1196, 1314, 1353
MaeI CTAG 2 cut(s) 218, 902
MaeII ACGT 2 cut(s) 826, 985
MaeIII GTNAC 1 cut(s) 1022
MalI GATC 6 cut(s) 76, 134, 1018, 1070, 1319, 1422
MboI GATC 6 cut(s) 74, 132, 1016, 1068, 1317, 1420
MboII GAAGA 5 cut(s) 127, 182, 551, 728, 785
MflI RGATCY 2 cut(s) 74, 1016
MluCI AATT 9 cut(s) 426, 610, 640, 679, 693, 1145, 1227, 1375, 1387
MlyI GAGTC 1 cut(s) 950
MmeI TCCRAC 2 cut(s) 15, 757
Mph1103I ATGCAT 1 cut(s) 1417
MseI TTAA 5 cut(s) 678, 887, 1200, 1256, 1374
MslI CAYNNNNRTG 3 cut(s) 494, 572, 929
MspA1I CMGCKG 2 cut(s) 188, 1184
MspI CCGG 6 cut(s) 431, 807, 1041, 1062, 1208, 1247
MspR9I CCNGG 5 cut(s) 182, 629, 726, 895, 1081
Mva1269I GAATGC 1 cut(s) 1239
MvaI CCWGG 5 cut(s) 182, 629, 726, 895, 1081
MvnI CGCG 2 cut(s) 1154, 1192
MwoI GCNNNNNNNGC 5 cut(s) 431, 860, 911, 1333, 1336
NdeI CATATG 2 cut(s) 233, 1417
NdeII GATC 6 cut(s) 74, 132, 1016, 1068, 1317, 1420
NlaIII CATG 4 cut(s) 499, 577, 928, 1443
NlaIV GGNNCC 5 cut(s) 76, 193, 327, 805, 899
NsiI ATGCAT 1 cut(s) 1417
PceI AGGCCT 1 cut(s) 251
PctI GAATGC 1 cut(s) 1239
PfeI GAWTC 3 cut(s) 673, 689, 1044
PinAI ACCGGT 1 cut(s) 1207
PleI GAGTC 1 cut(s) 950
PpsI GAGTC 1 cut(s) 950
PpuMI RGGWCCY 1 cut(s) 898
Psp5II RGGWCCY 1 cut(s) 898
Psp6I CCWGG 5 cut(s) 180, 627, 724, 893, 1079
PspFI CCCAGC 1 cut(s) 1180
PspGI CCWGG 5 cut(s) 180, 627, 724, 893, 1079
PspN4I GGNNCC 5 cut(s) 76, 193, 327, 805, 899
PspPI GGNCC 4 cut(s) 155, 191, 326, 898
PspPPI RGGWCCY 1 cut(s) 898
PstI CTGCAG 2 cut(s) 265, 1338
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 2 cut(s) 74, 1016
PvuII CAGCTG 2 cut(s) 188, 1184
RsaI GTAC 8 cut(s) 274, 332, 653, 700, 730, 805, 1216, 1352
RsaNI GTAC 8 cut(s) 273, 331, 652, 699, 729, 804, 1215, 1351
RseI CAYNNNNRTG 3 cut(s) 494, 572, 929
SaqAI TTAA 5 cut(s) 678, 887, 1200, 1256, 1374
Sau3AI GATC 6 cut(s) 74, 132, 1016, 1068, 1317, 1420
Sau96I GGNCC 4 cut(s) 155, 191, 326, 898
ScaI AGTACT 1 cut(s) 700
SchI GAGTC 1 cut(s) 950
ScrFI CCNGG 5 cut(s) 182, 629, 726, 895, 1081
SfaNI GCATC 4 cut(s) 981, 1196, 1314, 1353
SfcI CTRYAG 3 cut(s) 261, 502, 1334
SinI GGWCC 4 cut(s) 155, 191, 326, 898
SmiMI CAYNNNNRTG 3 cut(s) 494, 572, 929
Sse9I AATT 9 cut(s) 426, 610, 640, 679, 693, 1145, 1227, 1375, 1387
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 5 cut(s) 444, 1034, 1192, 1250, 1313
SspI AATATT 1 cut(s) 46
SspMI CTAG 2 cut(s) 218, 902
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 5 cut(s) 180, 627, 724, 893, 1079
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 4 cut(s) 330, 460, 637, 1219
TaiI ACGT 2 cut(s) 829, 988
TaqI TCGA 2 cut(s) 168, 1347
TasI AATT 9 cut(s) 426, 610, 640, 679, 693, 1145, 1227, 1375, 1387
TatI WGTACW 3 cut(s) 651, 698, 1350
TauI GCSGC 1 cut(s) 1195
TfiI GAWTC 3 cut(s) 673, 689, 1044
Tru1I TTAA 5 cut(s) 678, 887, 1200, 1256, 1374
Tru9I TTAA 5 cut(s) 678, 887, 1200, 1256, 1374
TscAI CASTG 1 cut(s) 1224
TseI GCWGC 9 cut(s) 185, 530, 905, 951, 1106, 1184, 1310, 1327, 1336
TspDTI ATGAA 7 cut(s) 17, 512, 556, 562, 1138, 1187, 1222
TspRI CASTG 1 cut(s) 1224
VpaK11BI GGWCC 4 cut(s) 155, 191, 326, 898
XapI RAATTY 2 cut(s) 1145, 1387
XspI CTAG 2 cut(s) 218, 902
ZrmI AGTACT 1 cut(s) 700
Zsp2I ATGCAT 1 cut(s) 1417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.