Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003337

Physical Location & Seq

Genomic Coordinates Reverse (-)

26422312 .. 26428801

Gene Structure 6490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGGCACACAATTGGTCCCTAATATTTGGGATTCGGCTACAGAAACACAAAAGTCCACAAATTCAAAGTTCATCGTCTCCTTCCAATCTAAGCAAAAAAAAAAATTCAAAGAAACTTCATCCTCTCCATTTCTTACCACCAAAGGAACCAGAAACCTCCACCAAGATCTCTCTCCGTCTCCGATCAAAAAATGGCCGGCCGGTTCGGCTTCTCCTCCTCTCCTCCAGGGGTGATGATGACCGTCACCAACACCCCCGCTGCAGAACTCGCTCTCACCAATCTCGCCTACTGCTCCCCCGCCGATCTCCAGAACTTCGCCATCCCCGGCACCAAGCTCAACCTAGCCTCCGTCGGCGAATCCTTCGTCCTCACCAAACTGGTCATCCAAGCATACAGAGCGGCCACATTGCGCTAAACGCAATCCAACGGCGGCATGCTAGGGTTTCTACTGGCGATTCAGTCTCCGTTAGCAGGTTTGTCCCGCCGGAGGATTTCAATCTGGCGCTGCTCACGCTGGATTTGGAGTTTGTGAAAAAGGGCACTAAGAGTGAACAGGTTGATGCTGTTCGTCTGTCGGACCAACTTAAAAAAAGATTTATCAACCAGGTCATGACGGCTGGACAAAGAGTATCATTTGAGTTTCATGGGATTAACTACATTTTTACTGTCAATCGAGCAGCAGTAGAGGGACAAGAAAAGTCCAACAATGGTATTGAAAGAGGGATGATTGTCAATGATACATATTTCATCTTCGAGACATCAAATGCAAGTGGAATAAAGATCGTAAATCAGCGTGAAGCTGCAAGTAGCAACATTTTCAGGCACAAGGAGTTTAATCTTGAAACACTTGGAATTGGTGGCTTAAGTGCTGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCCCGTGTATTCCCTCCTCACGTGACAAATAAATTAGGGATCAATCATGTAAAGGGTATGCTGCTTTATGGGCCACCTGGCACTGGAAAAACTCTCATGGCTCGTCAAATTGGAAAGATGTTGAACGGGAAAGAACCAAAGATTGTTAATGGCCCTGAAGTTTTGAGCAAGTTCGTTGGTGAAACTGAGAAAAATGTTAGGGATCTATTTGCTGATGCCGAGAATGATCAAAGGGCTCGCGGAGACCAGAGTGATTTGCATGTGATAATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGATCAACTAGAGATGGTACCGGGGTTCATGACAGTATTGTGAACCAGTTACTCACGAAGATTGATGGCGTGGAGTCTCTCAATAATGTTTTGCTTATTGGGATGACTAACAGAAAGGATTTGCTTGATGAAGCCCTTTTGAGGCCAGGACGTCTGGAAGTTCAAATTGAGATAAGCCTTCCTGATGAAAATGGTCGTGTACAGATTCTTCATATTCATACAAACAAGATGAAGGAGAGCTCTTTTCTTTCCCCGGATGTAAACCTCCAAGAGCTTGCTGCTCGTACGAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTTAAAAGTGCAGTATCATTTGCTCTGAATAGACAACTAAGTTTGGATGATCTTACCAAACCAGTGGATGAAGAGAGTATTAAGGTTACTATGGATGATTTTCTACATGCACTTCAAGAAATTGTACCTGCATTTGGAGCCTCCACTGATGACCTTCAAAGATGCAGACTTAATGGCATGGTGGATTGTGGTGATCGACATAAGCACATTTATCAAAGAGCTATATTACTAGTGGAGCAAGTTAAATTGAGCAAAGGAAGCCCACTTGTTACATGCCTTCTGGAAGGCCCGAGTGGCAGTGGTAAATCTGCACTAGCGGCTACTGTTGGCATCGACAGTGATTTTCCCTACGTCAAGATTGTCTCGGCTGAGACAATGATTGGTCTTCATGAGAGCACCAAATGCGCACAAATTGTAAAGGTTTTCGAGGATGCATACAAGTCACCATTGAGCATCATTATCCTAGATGATATTGAAAGGTTACTGGAGTATGTTCCTATTGGTCCAAGGTTTTCCAATTTAATATCTCAAACACTCTTGGTCCTACTTAAGCGCCTCCCTCCAAAGGGGAAAAAACTTCTGGTATTTGGAACAACAAGTGAATTGGGTTTCTTAGATTCAATCGGCTTTTGTGATACCTTTTCAGTCACTTACAATGTACCCACACTAAAGACGGAGGATGCAAAGAAGGTGCTAGCCCAGTTGAATGTTTTTGCTGATGAAGACATCGATGCGGCTGCAGAGGCCCTGAATGATATGCCCATCAAGAAGCTCTACATGTTAATTGAGATGGCAGCTCAGGGTGACCAAGGAGGCTCTGCCGAGGCTATCTACTCCGGAAAAGAGAAGATAAACGTCACTCACTTTTTCGATTGCCTTCAGGACATTGTTCGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

809

Amino Acids

89.99

Weight (kDa)

9.05

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_2	PF02933	186 - 230	5.3e-06	Cell division protein 48 (CDC48), domain 2
AAA	PF00004	321 - 461	2.4e-36	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	488 - 523	3.8e-10	AAA+ lid domain
AAA	PF00004	602 - 715	5.2e-09	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04910
fragaria_vesca	FvH4_3g09180 FvH4_4g01371 FvH4_4g01380
malus_domestica	MD05G1312500.v1.1 MD05G1339600.v1.1 MD10G1294300.v1.1
prunus_persica	Prupe.4G047600_v2.0.a1
pyrus_communis	pycom05g29040 pycom10g24600
rosa_chinensis	RchiOBHm_Chr4g0419821 RchiOBHm_Chr5g0005931 RchiOBHm_Chr5g0005941 RchiOBHm_Chr5g0008441
rosa_laevigata	RLG00000031340 RLG00000031347 RLG00000031352 RLG00000031389 RLG00000031572
rosa_multiflora	Rmu_sc0000720.1_g000006 Rmu_sc0004326.1_g000001 Rmu_sc0006414.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068050
rosa_rugosa	Rorug04G0435800
rosa_samantha	Rh4AG222000 Rh4BG224200 Rh4CG235100 Rh4DG221000 Rh5AG064700 Rh5BG061700 Rh5CG071500 Rh5CG071600 Rh5CG071800 Rh5CG071900
rosa_wichuraiana	Rw4G019100 Rw5G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1360
Acc16I	TGCGCA	1 cut(s)	1933
Acc36I	ACCTGC	2 cut(s)	462, 1663
Acc65I	GGTACC	1 cut(s)	1223
AccB1I	GGYRCC	2 cut(s)	327, 1223
AccBSI	CCGCTC	1 cut(s)	399
AccII	CGCG	1 cut(s)	1143
AccIII	TCCGGA	1 cut(s)	2363
AciI	CCGC	8 cut(s)	256, 298, 399, 430, 482, 1143, 1844, 2261
AclWI	GGATC	3 cut(s)	950, 1113, 1216
AcoI	YGGCCR	3 cut(s)	193, 197, 400
AcsI	RAATTY	2 cut(s)	60, 103
AcuI	CTGAAG	2 cut(s)	1080, 2390
AcvI	CACGTG	1 cut(s)	925
AcyI	GRCGYC	1 cut(s)	1357
AfaI	GTAC	5 cut(s)	1225, 1407, 1492, 1653, 2187
AfiI	CCNNNNNNNGG	7 cut(s)	471, 487, 986, 1347, 1661, 2092, 2093
AflII	CTTAAG	2 cut(s)	862, 2075
AflIII	ACRYGT	1 cut(s)	2304
AhlI	ACTAGT	1 cut(s)	1756
AjnI	CCWGG	4 cut(s)	224, 603, 979, 1351
AluBI	AGCT	8 cut(s)	335, 800, 896, 1446, 1480, 1748, 2299, 2324
AluI	AGCT	8 cut(s)	335, 800, 896, 1446, 1480, 1748, 2299, 2324
Alw21I	GWGCWC	2 cut(s)	1448, 1925
Alw26I	GTCTC	8 cut(s)	81, 182, 466, 749, 1140, 1287, 1892, 1894
AlwI	GGATC	3 cut(s)	950, 1113, 1216
Ama87I	CYCGRG	1 cut(s)	1816
Aor13HI	TCCGGA	1 cut(s)	2363
AoxI	GGCC	8 cut(s)	193, 197, 400, 974, 1054, 1349, 1813, 2271
ApeKI	GCWGC	8 cut(s)	258, 505, 677, 800, 964, 1484, 2264, 2321
ApoI	RAATTY	2 cut(s)	60, 103
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
Asp718I	GGTACC	1 cut(s)	1223
AspLEI	GCGC	4 cut(s)	412, 505, 1934, 2082
AspS9I	GGNCC	8 cut(s)	15, 577, 974, 1055, 1814, 2030, 2068, 2272
AsuC2I	CCSGG	3 cut(s)	325, 1228, 1460
AsuHPI	GGTGA	8 cut(s)	236, 242, 266, 362, 1094, 1730, 1962, 2342
AsuII	TTCGAA	1 cut(s)	889
AsuNHI	GCTAGC	1 cut(s)	2221
AvaI	CYCGRG	1 cut(s)	1816
AvaII	GGWCC	4 cut(s)	15, 577, 2030, 2068
BaeGI	GKGCMC	1 cut(s)	542
BaeI	ACNNNNGTAYC	2 cut(s)	1215, 1248
BanI	GGYRCC	2 cut(s)	327, 1223
BanII	GRGCYC	2 cut(s)	1141, 1448
BarI	GAAGNNNNNNTAC	2 cut(s)	1398, 1430
BbrPI	CACGTG	1 cut(s)	925
BbsI	GAAGAC	2 cut(s)	1904, 2256
Bbv12I	GWGCWC	2 cut(s)	1448, 1925
BbvI	GCAGC	8 cut(s)	245, 492, 689, 787, 951, 1471, 2251, 2333
BccI	CCATC	5 cut(s)	327, 1214, 1265, 2297, 2311
BceAI	ACGGC	2 cut(s)	443, 630
BcgI	CGANNNNNNTGC	2 cut(s)	2246, 2280
BciT130I	CCWGG	4 cut(s)	226, 605, 981, 1353
BclI	TGATCA	1 cut(s)	1129
BcnI	CCSGG	3 cut(s)	325, 1228, 1460
BcoDI	GTCTC	8 cut(s)	81, 182, 466, 749, 1140, 1287, 1892, 1894
BcuI	ACTAGT	1 cut(s)	1756
BfaI	CTAG	7 cut(s)	342, 438, 1215, 1757, 1841, 1991, 2222
BfmI	CTRYAG	4 cut(s)	38, 259, 1501, 2265
BfoI	RGCGCY	2 cut(s)	506, 2083
BfrI	CTTAAG	2 cut(s)	862, 2075
BfuAI	ACCTGC	2 cut(s)	462, 1663
BglI	GCCNNNNNGGC	2 cut(s)	205, 1821
BglII	AGATCT	1 cut(s)	165
Bme1390I	CCNGG	7 cut(s)	226, 325, 605, 981, 1228, 1353, 1460
Bme18I	GGWCC	4 cut(s)	15, 577, 2030, 2068
BmeT110I	CYCGRG	1 cut(s)	1816
BmgT120I	GGNCC	8 cut(s)	15, 577, 974, 1055, 1814, 2030, 2068, 2272
BmiI	GGNNCC	5 cut(s)	17, 147, 329, 1225, 1666
BmrFI	CCNGG	7 cut(s)	226, 325, 605, 981, 1228, 1353, 1460
BmrI	ACTGGG	1 cut(s)	2221
BmtI	GCTAGC	1 cut(s)	2225
BmuI	ACTGGG	1 cut(s)	2221
BpiI	GAAGAC	2 cut(s)	1904, 2256
BpmI	CTGGAG	3 cut(s)	208, 291, 2033
Bpu10I	CCTNAGC	1 cut(s)	2325
Bpu14I	TTCGAA	1 cut(s)	889
BpuMI	CCSGG	3 cut(s)	325, 1228, 1460
Bsa29I	ATCGAT	1 cut(s)	2256
BsaAI	YACGTR	1 cut(s)	925
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	1357
BsaI	GGTCTC	1 cut(s)	1140
BsaJI	CCNNGG	7 cut(s)	225, 323, 1227, 1458, 2033, 2335, 2349
BsaWI	WCCGGW	1 cut(s)	2363
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	7 cut(s)	471, 487, 986, 1347, 1661, 2092, 2093
Bse118I	RCCGGY	2 cut(s)	195, 199
Bse1I	ACTGG	7 cut(s)	382, 454, 991, 1252, 1589, 2016, 2227
Bse3DI	GCAATG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	495
BseAI	TCCGGA	1 cut(s)	2363
BseBI	CCWGG	4 cut(s)	226, 605, 981, 1353
BseCI	ATCGAT	1 cut(s)	2256
BseDI	CCNNGG	7 cut(s)	225, 323, 1227, 1458, 2033, 2335, 2349
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	7 cut(s)	471, 487, 986, 1347, 1661, 2092, 2093
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	4 cut(s)	861, 1080, 1887, 2339
BseNI	ACTGG	7 cut(s)	382, 454, 991, 1252, 1589, 2016, 2227
BseRI	GAGGAG	4 cut(s)	203, 206, 211, 909
BseSI	GKGCMC	1 cut(s)	542
BseX3I	CGGCCG	1 cut(s)	197
BseXI	GCAGC	8 cut(s)	245, 492, 689, 787, 951, 1471, 2251, 2333
BsgI	GTGCAG	3 cut(s)	1530, 1557, 1821
Bsh1236I	CGCG	1 cut(s)	1143
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	8 cut(s)	195, 199, 402, 976, 1056, 1351, 1815, 2273
BshNI	GGYRCC	2 cut(s)	327, 1223
BshVI	ATCGAT	1 cut(s)	2256
BsiEI	CGRYCG	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	1448, 1925
BsiHKCI	CYCGRG	1 cut(s)	1816
BsiSI	CCGG	7 cut(s)	196, 200, 325, 485, 1227, 1460, 2364
BsiWI	CGTACG	1 cut(s)	1490
BslFI	GGGAC	2 cut(s)	464, 702
BslI	CCNNNNNNNGG	7 cut(s)	471, 487, 986, 1347, 1661, 2092, 2093
BsmAI	GTCTC	8 cut(s)	81, 182, 466, 749, 1140, 1287, 1892, 1894
BsmBI	CGTCTC	2 cut(s)	81, 182
BsmFI	GGGAC	2 cut(s)	464, 702
BsnI	GGCC	8 cut(s)	195, 199, 402, 976, 1056, 1351, 1815, 2273
Bso31I	GGTCTC	1 cut(s)	1140
BsoBI	CYCGRG	1 cut(s)	1816
Bsp119I	TTCGAA	1 cut(s)	889
Bsp1286I	GDGCHC	4 cut(s)	542, 1141, 1448, 1925
Bsp13I	TCCGGA	1 cut(s)	2363
Bsp1407I	TGTACA	1 cut(s)	1405
BspACI	CCGC	8 cut(s)	256, 298, 399, 430, 482, 1143, 1844, 2261
BspANI	GGCC	8 cut(s)	195, 199, 402, 976, 1056, 1351, 1815, 2273
BspCNI	CTCAG	4 cut(s)	862, 1081, 1888, 2338
BspDI	ATCGAT	1 cut(s)	2256
BspEI	TCCGGA	1 cut(s)	2363
BspFNI	CGCG	1 cut(s)	1143
BspHI	TCATGA	3 cut(s)	609, 1234, 1915
BspLI	GGNNCC	5 cut(s)	17, 147, 329, 1225, 1666
BspMAI	CTGCAG	2 cut(s)	263, 2269
BspMI	ACCTGC	2 cut(s)	462, 1663
BspOI	GCTAGC	1 cut(s)	2225
BspPI	GGATC	3 cut(s)	950, 1113, 1216
BspQI	GCTCTTC	1 cut(s)	886
BspT104I	TTCGAA	1 cut(s)	889
BspT107I	GGYRCC	2 cut(s)	327, 1223
BspTI	CTTAAG	2 cut(s)	862, 2075
BspTNI	GGTCTC	1 cut(s)	1140
BsrBI	CCGCTC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	405
BsrFI	RCCGGY	2 cut(s)	195, 199
BsrGI	TGTACA	1 cut(s)	1405
BsrI	ACTGG	7 cut(s)	382, 454, 991, 1252, 1589, 2016, 2227
BssAI	RCCGGY	2 cut(s)	195, 199
BssECI	CCNNGG	7 cut(s)	225, 323, 1227, 1458, 2033, 2335, 2349
BssNI	GRCGYC	1 cut(s)	1357
BssT1I	CCWWGG	2 cut(s)	2033, 2335
Bst2UI	CCWGG	4 cut(s)	226, 605, 981, 1353
Bst4CI	ACNGT	6 cut(s)	242, 667, 1241, 1505, 1852, 1865
Bst6I	CTCTTC	2 cut(s)	886, 1593
BstACI	GRCGYC	1 cut(s)	1357
BstAFI	CTTAAG	2 cut(s)	862, 2075
BstAPI	GCANNNNNTGC	1 cut(s)	1929
BstAUI	TGTACA	1 cut(s)	1405
BstBAI	YACGTR	1 cut(s)	925
BstBI	TTCGAA	1 cut(s)	889
BstC8I	GCNNGC	5 cut(s)	197, 435, 1141, 1482, 2223
BstDEI	CTNAG	8 cut(s)	89, 543, 870, 1089, 1565, 1896, 2140, 2325
BstEII	GGTNACC	1 cut(s)	2330
BstFNI	CGCG	1 cut(s)	1143
BstH2I	RGCGCY	2 cut(s)	506, 2083
BstHHI	GCGC	4 cut(s)	412, 505, 1934, 2082
BstMAI	GTCTC	8 cut(s)	81, 182, 466, 749, 1140, 1287, 1892, 1894
BstMCI	CGRYCG	1 cut(s)	200
BstNI	CCWGG	4 cut(s)	226, 605, 981, 1353
BstNSI	RCATGY	5 cut(s)	437, 1166, 1637, 1803, 2308
BstPI	GGTNACC	1 cut(s)	2330
BstSCI	CCNGG	7 cut(s)	224, 323, 603, 979, 1226, 1351, 1458
BstSFI	CTRYAG	4 cut(s)	38, 259, 1501, 2265
BstSLI	GKGCMC	1 cut(s)	542
BstUI	CGCG	1 cut(s)	1143
BstV1I	GCAGC	8 cut(s)	245, 492, 689, 787, 951, 1471, 2251, 2333
BstV2I	GAAGAC	2 cut(s)	1904, 2256
BstX2I	RGATCY	2 cut(s)	165, 1105
BstXI	CCANNNNNNTGG	1 cut(s)	1591
BstYI	RGATCY	2 cut(s)	165, 1105
BstZI	CGGCCG	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	2256
BsuRI	GGCC	8 cut(s)	195, 199, 402, 976, 1056, 1351, 1815, 2273
BsuTUI	ATCGAT	1 cut(s)	2256
BtsI	GCAGTG	1 cut(s)	1831
BtsIMutI	CAGTG	6 cut(s)	984, 1510, 1596, 1671, 1831, 1870
BveI	ACCTGC	2 cut(s)	462, 1663
Cac8I	GCNNGC	5 cut(s)	197, 435, 1141, 1482, 2223
CciI	TCATGA	3 cut(s)	609, 1234, 1915
CfoI	GCGC	4 cut(s)	412, 505, 1934, 2082
Cfr10I	RCCGGY	2 cut(s)	195, 199
Cfr13I	GGNCC	8 cut(s)	15, 577, 974, 1055, 1814, 2030, 2068, 2272
ClaI	ATCGAT	1 cut(s)	2256
CsiI	ACCWGGT	1 cut(s)	603
Csp6I	GTAC	5 cut(s)	1224, 1406, 1491, 1652, 2186
CviQI	GTAC	5 cut(s)	1224, 1406, 1491, 1652, 2186
DdeI	CTNAG	8 cut(s)	89, 543, 870, 1089, 1565, 1896, 2140, 2325
EaeI	YGGCCR	3 cut(s)	193, 197, 400
EagI	CGGCCG	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	886, 1593
EarI	CTCTTC	2 cut(s)	886, 1593
Ecl136II	GAGCTC	1 cut(s)	1446
EclXI	CGGCCG	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	2033, 2335
Eco24I	GRGCYC	2 cut(s)	1141, 1448
Eco31I	GGTCTC	1 cut(s)	1140
Eco47I	GGWCC	4 cut(s)	15, 577, 2030, 2068
Eco52I	CGGCCG	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	1446
Eco57I	CTGAAG	2 cut(s)	1080, 2390
Eco72I	CACGTG	1 cut(s)	925
Eco88I	CYCGRG	1 cut(s)	1816
Eco91I	GGTNACC	1 cut(s)	2330
EcoICRI	GAGCTC	1 cut(s)	1446
EcoO109I	RGGNCCY	1 cut(s)	2272
EcoO65I	GGTNACC	1 cut(s)	2330
EcoRII	CCWGG	4 cut(s)	224, 603, 979, 1351
EcoT14I	CCWWGG	2 cut(s)	2033, 2335
EcoT22I	ATGCAT	1 cut(s)	1963
EcoT38I	GRGCYC	2 cut(s)	1141, 1448
ErhI	CCWWGG	2 cut(s)	2033, 2335
Esp3I	CGTCTC	2 cut(s)	81, 182
FaqI	GGGAC	2 cut(s)	464, 702
FauI	CCCGC	3 cut(s)	263, 305, 489
FbaI	TGATCA	1 cut(s)	1129
FriOI	GRGCYC	2 cut(s)	1141, 1448
FseI	GGCCGGCC	1 cut(s)	199
FspAI	RTGCGCAY	1 cut(s)	1933
FspBI	CTAG	7 cut(s)	342, 438, 1215, 1757, 1841, 1991, 2222
FspI	TGCGCA	1 cut(s)	1933
GlaI	GCGC	4 cut(s)	411, 504, 1933, 2081
GsuI	CTGGAG	3 cut(s)	208, 291, 2033
HaeII	RGCGCY	2 cut(s)	506, 2083
HaeIII	GGCC	8 cut(s)	195, 199, 402, 976, 1056, 1351, 1815, 2273
HapII	CCGG	7 cut(s)	196, 200, 325, 485, 1227, 1460, 2364
HhaI	GCGC	4 cut(s)	412, 505, 1934, 2082
Hin1I	GRCGYC	1 cut(s)	1357
Hin6I	GCGC	4 cut(s)	410, 503, 1932, 2080
HinP1I	GCGC	4 cut(s)	410, 503, 1932, 2080
HinfI	GANTC	6 cut(s)	31, 357, 455, 1280, 1411, 2144
HpaII	CCGG	7 cut(s)	196, 200, 325, 485, 1227, 1460, 2364
HphI	GGTGA	8 cut(s)	236, 242, 266, 362, 1094, 1730, 1962, 2342
Hpy166II	GTNNAC	5 cut(s)	56, 551, 1249, 1406, 1468
Hpy188I	TCNGA	3 cut(s)	182, 577, 1554
Hpy8I	GTNNAC	5 cut(s)	56, 551, 1249, 1406, 1468
Hpy99I	CGWCG	1 cut(s)	354
HpyCH4III	ACNGT	6 cut(s)	242, 667, 1241, 1505, 1852, 1865
HpyCH4IV	ACGT	4 cut(s)	924, 1357, 1878, 2382
HpyF3I	CTNAG	8 cut(s)	89, 543, 870, 1089, 1565, 1896, 2140, 2325
HpySE526I	ACGT	4 cut(s)	924, 1357, 1878, 2382
Hsp92I	GRCGYC	1 cut(s)	1357
HspAI	GCGC	4 cut(s)	410, 503, 1932, 2080
Kpn2I	TCCGGA	1 cut(s)	2363
KpnI	GGTACC	1 cut(s)	1227
KroI	GCCGGC	1 cut(s)	195
KroNI	GCCGGC	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	1129
LguI	GCTCTTC	1 cut(s)	886
LmnI	GCTCC	3 cut(s)	297, 1664, 1762
Lsp1109I	GCAGC	8 cut(s)	245, 492, 689, 787, 951, 1471, 2251, 2333
MabI	ACCWGGT	1 cut(s)	603
MaeI	CTAG	7 cut(s)	342, 438, 1215, 1757, 1841, 1991, 2222
MaeII	ACGT	4 cut(s)	924, 1357, 1878, 2382
MbiI	CCGCTC	1 cut(s)	399
MboII	GAAGA	8 cut(s)	742, 903, 1276, 1406, 1610, 1904, 2261, 2386
MfeI	CAATTG	1 cut(s)	10
MflI	RGATCY	2 cut(s)	165, 1105
MhlI	GDGCHC	4 cut(s)	542, 1141, 1448, 1925
MlyI	GAGTC	1 cut(s)	1289
MmeI	TCCRAC	3 cut(s)	448, 555, 726
Mph1103I	ATGCAT	1 cut(s)	1963
MroI	TCCGGA	1 cut(s)	2363
MroNI	GCCGGC	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	258
MspCI	CTTAAG	2 cut(s)	862, 2075
MspI	CCGG	7 cut(s)	196, 200, 325, 485, 1227, 1460, 2364
MspR9I	CCNGG	7 cut(s)	226, 325, 605, 981, 1228, 1353, 1460
MunI	CAATTG	1 cut(s)	10
MvaI	CCWGG	4 cut(s)	226, 605, 981, 1353
MvnI	CGCG	1 cut(s)	1143
NaeI	GCCGGC	1 cut(s)	197
NciI	CCSGG	3 cut(s)	325, 1228, 1460
NgoMIV	GCCGGC	1 cut(s)	195
NheI	GCTAGC	1 cut(s)	2221
NlaIV	GGNNCC	5 cut(s)	17, 147, 329, 1225, 1666
NmeAIII	GCCGAG	3 cut(s)	1147, 1871, 2374
NmuCI	GTSAC	6 cut(s)	242, 925, 1968, 2173, 2330, 2383
NsbI	TGCGCA	1 cut(s)	1933
NsiI	ATGCAT	1 cut(s)	1963
NspI	RCATGY	5 cut(s)	437, 1166, 1637, 1803, 2308
NspV	TTCGAA	1 cut(s)	889
PaeI	GCATGC	1 cut(s)	437
PagI	TCATGA	3 cut(s)	609, 1234, 1915
PciI	ACATGT	1 cut(s)	2304
PciSI	GCTCTTC	1 cut(s)	886
PdiI	GCCGGC	1 cut(s)	197
PfeI	GAWTC	5 cut(s)	31, 357, 455, 1411, 2144
Pfl23II	CGTACG	1 cut(s)	1490
PleI	GAGTC	1 cut(s)	1288
PmaCI	CACGTG	1 cut(s)	925
PmlI	CACGTG	1 cut(s)	925
PpsI	GAGTC	1 cut(s)	1288
Ppu21I	YACGTR	1 cut(s)	925
PscI	ACATGT	1 cut(s)	2304
Psp124BI	GAGCTC	1 cut(s)	1448
Psp6I	CCWGG	4 cut(s)	224, 603, 979, 1351
PspCI	CACGTG	1 cut(s)	925
PspEI	GGTNACC	1 cut(s)	2330
PspGI	CCWGG	4 cut(s)	224, 603, 979, 1351
PspLI	CGTACG	1 cut(s)	1490
PspN4I	GGNNCC	5 cut(s)	17, 147, 329, 1225, 1666
PspPI	GGNCC	8 cut(s)	15, 577, 974, 1055, 1814, 2030, 2068, 2272
PstI	CTGCAG	2 cut(s)	263, 2269
PsuI	RGATCY	2 cut(s)	165, 1105
RigI	GGCCGGCC	1 cut(s)	199
RsaI	GTAC	5 cut(s)	1225, 1407, 1492, 1653, 2187
RsaNI	GTAC	5 cut(s)	1224, 1406, 1491, 1652, 2186
SacI	GAGCTC	1 cut(s)	1448
SapI	GCTCTTC	1 cut(s)	886
Sau96I	GGNCC	8 cut(s)	15, 577, 974, 1055, 1814, 2030, 2068, 2272
SchI	GAGTC	1 cut(s)	1289
ScrFI	CCNGG	7 cut(s)	226, 325, 605, 981, 1228, 1353, 1460
SduI	GDGCHC	4 cut(s)	542, 1141, 1448, 1925
SexAI	ACCWGGT	1 cut(s)	603
SfcI	CTRYAG	4 cut(s)	38, 259, 1501, 2265
SfuI	TTCGAA	1 cut(s)	889
SinI	GGWCC	4 cut(s)	15, 577, 2030, 2068
SmlI	CTYRAG	2 cut(s)	862, 2075
SmoI	CTYRAG	2 cut(s)	862, 2075
SpeI	ACTAGT	1 cut(s)	1756
SphI	GCATGC	1 cut(s)	437
SsiI	CCGC	8 cut(s)	256, 298, 399, 430, 482, 1143, 1844, 2261
SspI	AATATT	1 cut(s)	24
SspMI	CTAG	7 cut(s)	342, 438, 1215, 1757, 1841, 1991, 2222
SstI	GAGCTC	1 cut(s)	1448
StyD4I	CCNGG	7 cut(s)	224, 323, 603, 979, 1226, 1351, 1458
StyI	CCWWGG	2 cut(s)	2033, 2335
TaaI	ACNGT	6 cut(s)	242, 667, 1241, 1505, 1852, 1865
TaiI	ACGT	4 cut(s)	927, 1360, 1881, 2385
TaqI	TCGA	8 cut(s)	673, 753, 889, 1723, 1860, 1953, 2256, 2397
TatI	WGTACW	1 cut(s)	1405
TauI	GCSGC	4 cut(s)	402, 433, 1847, 2264
TfiI	GAWTC	5 cut(s)	31, 357, 455, 1411, 2144
TscAI	CASTG	6 cut(s)	991, 1510, 1596, 1678, 1831, 1870
TseFI	GTSAC	6 cut(s)	242, 925, 1968, 2173, 2330, 2383
TseI	GCWGC	8 cut(s)	258, 505, 677, 800, 964, 1484, 2264, 2321
Tsp45I	GTSAC	6 cut(s)	242, 925, 1968, 2173, 2330, 2383
TspGWI	ACGGA	4 cut(s)	164, 338, 454, 2216
TspRI	CASTG	6 cut(s)	991, 1510, 1596, 1678, 1831, 1870
Vha464I	CTTAAG	2 cut(s)	862, 2075
VpaK11BI	GGWCC	4 cut(s)	15, 577, 2030, 2068
XapI	RAATTY	2 cut(s)	60, 103
XceI	RCATGY	5 cut(s)	437, 1166, 1637, 1803, 2308
XspI	CTAG	7 cut(s)	342, 438, 1215, 1757, 1841, 1991, 2222
ZraI	GACGTC	1 cut(s)	1358
Zsp2I	ATGCAT	1 cut(s)	1963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.