pycom11g03880

COP9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
3025317 .. 3029093
3777 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1161 bp
ATGGGCTTGCACAGATGCCGTAACATCGTTTCAAAGGCCACTAGATTTAGGCCCAACCCCTGCAACGAGCAGAGGGAAAGAAGAGCAAAAACAAAACCCAAACCCAAACCGGAGCTCCGAGGAGCCAAAAACCAAAACCACCAAATCGCGAAATCGGAAAAAATGGCGGAATCCTCCAGCAGCGGGCTGACGTTCAAGCTCCATCCACTGGTGATCGTCAACATCTCCGATCACTACTCTAGGGTTAAGTCCCAGATGCACCCGCCGATCACCAATACTCCAACACCACCGCCCAACAACGGCGCCGAAGGAGCAGTAGAAGCAGCAGCAGCCTCCTCTTCTTCCTCCTCCTCCACCGCCTCCGCCTCGTCTCCGCGCGTCTTCGGCTGCGTTATCGGGGTTCAGAGAGGCCGCACGGTCGAGATCTTCAACAGCTTAGAGCTCCTCTACGATCCCGAGACTCACTCCCTCGACCGTGCCTTCCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTATTTCCACACTTTTACATACTAGGGTGGTACTCAACTGGAACAGATGCTCAGGAATCTGACATGAACATCCACAAAGCTTTGATGGATATCAATGAAAGCCCTGTTTATGTTCTTCTCAACCCCTTGATCAATGCTGCTCAAAAGGATCTCCCAATCACTATTTACGAAAGCGAGATGCATGTCATTGACGGGATTCCACAGCTAATCTTCGTCAGTTCAAGCTATACTATTGAGACTGTGGAAGCTGAGCGCATTTCAGTTGACCATGTTGCCCATCTTAAACCATCTGATGGAGGTTCAGCAGCAACTCAATTGGCTGCTCATCTTACCGGAATTCACAGTGCCATCAAGATGCTAAATAGCAGAATTAGAGTGCTTCATCACTATCTTGTTGCTATGCAGAAAGGTGATATACCTTGTGAAAATTCACTTTTAAGACAAGTATCAAGTCTTCTGAGAAGGTTGCCTGCCATAGAATCAGGGAAATTTCAAGATGATTTTTTGATGGAATACAATGACACTTTGTTGATTACATATTTGGCTGTGCTGACCAACTGCTCAAGTACAACGAATGAGCTAGTCGACAAGTTCAACACTGCATATGATAGGCACAGTCGAAGAGGTGGACGGACTGCATATTTCTGA

Protein Analysis

387

Amino Acids

42.99

Weight (kDa)

8.81

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 61 - 204 1.1e-17 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg PF13012 253 - 367 3.9e-31 Maintenance of mitochondrial structure and function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccB7I CCANNNNNTGG 2 cut(s) 208, 806
AccI GTMKAC 1 cut(s) 1098
AccII CGCG 3 cut(s) 149, 376, 378
AciI CCGC 8 cut(s) 167, 183, 263, 290, 357, 363, 374, 412
AclWI GGATC 2 cut(s) 446, 669
AcsI RAATTY 3 cut(s) 849, 940, 1001
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 2 cut(s) 545, 1081
AfiI CCNNNNNNNGG 4 cut(s) 183, 208, 299, 806
AgsI TTSAA 6 cut(s) 33, 196, 430, 735, 1007, 1108
Alw21I GWGCWC 3 cut(s) 117, 444, 504
Alw26I GTCTC 3 cut(s) 375, 452, 743
AlwI GGATC 2 cut(s) 446, 669
Ama87I CYCGRG 2 cut(s) 455, 485
AoxI GGCC 3 cut(s) 36, 50, 409
ApeKI GCWGC 8 cut(s) 180, 323, 326, 329, 387, 650, 818, 833
ApoI RAATTY 3 cut(s) 849, 940, 1001
AspLEI GCGC 3 cut(s) 305, 378, 768
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 3 cut(s) 223, 262, 935
AvaI CYCGRG 2 cut(s) 455, 485
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 3 cut(s) 117, 444, 504
BarI GAAGNNNNNNTAC 2 cut(s) 951, 983
BbsI GAAGAC 2 cut(s) 373, 959
Bbv12I GWGCWC 3 cut(s) 117, 444, 504
BbvI GCAGC 8 cut(s) 192, 335, 338, 341, 374, 637, 820, 830
BccI CCATC 7 cut(s) 210, 592, 798, 800, 808, 869, 1015
BceAI ACGGC 2 cut(s) 3, 316
BclI TGATCA 1 cut(s) 642
BcoDI GTCTC 3 cut(s) 375, 452, 743
BfaI CTAG 4 cut(s) 42, 240, 536, 1094
BfoI RGCGCY 1 cut(s) 306
BglII AGATCT 1 cut(s) 423
BisI GCNGC 9 cut(s) 181, 324, 327, 330, 388, 412, 651, 819, 834
BlpI GCTNAGC 1 cut(s) 762
BlsI GCNGC 9 cut(s) 182, 325, 328, 331, 389, 413, 652, 820, 835
BmeT110I CYCGRG 2 cut(s) 455, 485
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 124, 304
BmsI GCATC 5 cut(s) 5, 246, 550, 681, 858
BpiI GAAGAC 2 cut(s) 373, 959
BplI GAGNNNNNCTC 2 cut(s) 449, 481
BpmI CTGGAG 1 cut(s) 160
Bpu10I CCTNAGC 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 762
BpuEI CTTGAG 1 cut(s) 1060
BsaBI GATNNNNATC 1 cut(s) 602
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 118
BsaWI WCCGGW 2 cut(s) 109, 845
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 262, 292
Bsc4I CCNNNNNNNGG 4 cut(s) 183, 208, 299, 806
Bse1I ACTGG 2 cut(s) 213, 556
Bse8I GATNNNNATC 1 cut(s) 602
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 2 cut(s) 202, 582
BseJI GATNNNNATC 1 cut(s) 602
BseLI CCNNNNNNNGG 4 cut(s) 183, 208, 299, 806
BseMII CTCAG 3 cut(s) 578, 753, 962
BseNI ACTGG 2 cut(s) 213, 556
BseRI GAGGAG 5 cut(s) 135, 325, 337, 340, 434
BseXI GCAGC 8 cut(s) 192, 335, 338, 341, 374, 637, 820, 830
Bsh1236I CGCG 3 cut(s) 149, 376, 378
Bsh1285I CGRYCG 2 cut(s) 420, 475
BshFI GGCC 3 cut(s) 38, 52, 411
BshNI GGYRCC 1 cut(s) 302
BsiEI CGRYCG 2 cut(s) 420, 475
BsiHKAI GWGCWC 3 cut(s) 117, 444, 504
BsiHKCI CYCGRG 2 cut(s) 455, 485
BsiSI CCGG 2 cut(s) 110, 846
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 4 cut(s) 183, 208, 299, 806
BsmAI GTCTC 3 cut(s) 375, 452, 743
BsmBI CGTCTC 1 cut(s) 375
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 3 cut(s) 38, 52, 411
BsoBI CYCGRG 2 cut(s) 455, 485
Bsp1286I GDGCHC 3 cut(s) 117, 444, 504
Bsp143I GATC 7 cut(s) 213, 229, 267, 423, 451, 642, 661
Bsp1720I GCTNAGC 1 cut(s) 762
Bsp68I TCGCGA 1 cut(s) 149
BspACI CCGC 8 cut(s) 167, 183, 263, 290, 357, 363, 374, 412
BspANI GGCC 3 cut(s) 38, 52, 411
BspCNI CTCAG 3 cut(s) 577, 754, 963
BspFNI CGCG 3 cut(s) 149, 376, 378
BspLI GGNNCC 2 cut(s) 124, 304
BspPI GGATC 2 cut(s) 446, 669
BspQI GCTCTTC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 302
BsrI ACTGG 2 cut(s) 213, 556
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 7 cut(s) 213, 229, 267, 423, 451, 642, 661
BssNI GRCGYC 1 cut(s) 303
Bst4CI ACNGT 5 cut(s) 418, 476, 754, 857, 1130
Bst6I CTCTTC 3 cut(s) 76, 343, 1129
BstACI GRCGYC 1 cut(s) 303
BstC8I GCNNGC 3 cut(s) 8, 185, 984
BstDEI CTNAG 4 cut(s) 436, 564, 762, 971
BstF5I GGATG 2 cut(s) 202, 582
BstFNI CGCG 3 cut(s) 149, 376, 378
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 3 cut(s) 305, 378, 768
BstKTI GATC 7 cut(s) 216, 232, 270, 426, 454, 645, 664
BstMAI GTCTC 3 cut(s) 375, 452, 743
BstMBI GATC 7 cut(s) 213, 229, 267, 423, 451, 642, 661
BstMCI CGRYCG 2 cut(s) 420, 475
BstMWI GCNNNNNNNGC 4 cut(s) 311, 320, 329, 384
BstNSI RCATGY 1 cut(s) 698
BstUI CGCG 3 cut(s) 149, 376, 378
BstV1I GCAGC 8 cut(s) 192, 335, 338, 341, 374, 637, 820, 830
BstV2I GAAGAC 2 cut(s) 373, 959
BstX2I RGATCY 2 cut(s) 423, 661
BstYI RGATCY 2 cut(s) 423, 661
BsuRI GGCC 3 cut(s) 38, 52, 411
BtsCI GGATG 2 cut(s) 202, 582
BtsI GCAGTG 1 cut(s) 1110
BtsIMutI CAGTG 3 cut(s) 206, 862, 1110
BtuMI TCGCGA 1 cut(s) 149
Cac8I GCNNGC 3 cut(s) 8, 185, 984
CfoI GCGC 3 cut(s) 305, 378, 768
Cfr13I GGNCC 1 cut(s) 51
CseI GACGC 1 cut(s) 367
Csp6I GTAC 2 cut(s) 544, 1080
CviAII CATG 3 cut(s) 577, 695, 782
CviQI GTAC 2 cut(s) 544, 1080
DdeI CTNAG 4 cut(s) 436, 564, 762, 971
DinI GGCGCC 1 cut(s) 304
DpnI GATC 7 cut(s) 215, 231, 269, 425, 453, 644, 663
DpnII GATC 7 cut(s) 213, 229, 267, 423, 451, 642, 661
Eam1104I CTCTTC 3 cut(s) 76, 343, 1129
EarI CTCTTC 3 cut(s) 76, 343, 1129
EciI GGCGGA 2 cut(s) 182, 352
Ecl136II GAGCTC 3 cut(s) 115, 442, 502
Eco24I GRGCYC 3 cut(s) 117, 444, 504
Eco32I GATATC 1 cut(s) 604
Eco53kI GAGCTC 3 cut(s) 115, 442, 502
Eco88I CYCGRG 2 cut(s) 455, 485
EcoICRI GAGCTC 3 cut(s) 115, 442, 502
EcoRI GAATTC 1 cut(s) 849
EcoRV GATATC 1 cut(s) 604
EcoT22I ATGCAT 1 cut(s) 696
EcoT38I GRGCYC 3 cut(s) 117, 444, 504
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 375
FaeI CATG 3 cut(s) 580, 698, 785
FaqI GGGAC 1 cut(s) 235
FatI CATG 3 cut(s) 576, 694, 781
FauI CCCGC 2 cut(s) 176, 270
FauNDI CATATG 1 cut(s) 1117
FbaI TGATCA 1 cut(s) 642
FblI GTMKAC 1 cut(s) 1098
Fnu4HI GCNGC 9 cut(s) 181, 324, 327, 330, 388, 412, 651, 819, 834
FokI GGATG 2 cut(s) 189, 569
FriOI GRGCYC 3 cut(s) 117, 444, 504
Fsp4HI GCNGC 9 cut(s) 181, 324, 327, 330, 388, 412, 651, 819, 834
FspBI CTAG 4 cut(s) 42, 240, 536, 1094
GlaI GCGC 3 cut(s) 304, 377, 767
GluI GCNGC 9 cut(s) 181, 324, 327, 330, 388, 412, 651, 819, 834
GsuI CTGGAG 1 cut(s) 160
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 3 cut(s) 38, 52, 411
HapII CCGG 2 cut(s) 110, 846
HgaI GACGC 1 cut(s) 367
HhaI GCGC 3 cut(s) 305, 378, 768
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 3 cut(s) 580, 698, 785
Hin6I GCGC 3 cut(s) 303, 376, 766
HinP1I GCGC 3 cut(s) 303, 376, 766
HincII GTYRAC 3 cut(s) 220, 778, 1099
HindII GTYRAC 3 cut(s) 220, 778, 1099
HindIII AAGCTT 1 cut(s) 591
HinfI GANTC 5 cut(s) 170, 460, 569, 709, 992
HpaII CCGG 2 cut(s) 110, 846
HphI GGTGA 3 cut(s) 223, 262, 935
Hpy166II GTNNAC 4 cut(s) 220, 778, 1099, 1142
Hpy188I TCNGA 8 cut(s) 119, 157, 229, 405, 574, 805, 972, 1160
Hpy188III TCNNGA 7 cut(s) 148, 421, 455, 487, 566, 865, 1007
Hpy8I GTNNAC 4 cut(s) 220, 778, 1099, 1142
HpyAV CCTTC 4 cut(s) 302, 490, 505, 969
HpyCH4III ACNGT 5 cut(s) 418, 476, 754, 857, 1130
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 7 cut(s) 10, 63, 259, 694, 916, 1115, 1151
HpyF10VI GCNNNNNNNGC 4 cut(s) 311, 320, 329, 384
HpyF3I CTNAG 4 cut(s) 436, 564, 762, 971
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 3 cut(s) 580, 698, 785
HspAI GCGC 3 cut(s) 303, 376, 766
KasI GGCGCC 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 7 cut(s) 213, 229, 267, 423, 451, 642, 661
LguI GCTCTTC 1 cut(s) 76
LmnI GCTCC 6 cut(s) 112, 120, 122, 204, 311, 447
Lsp1109I GCAGC 8 cut(s) 192, 335, 338, 341, 374, 637, 820, 830
LweI GCATC 5 cut(s) 5, 246, 550, 681, 858
MaeI CTAG 4 cut(s) 42, 240, 536, 1094
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 20
MalI GATC 7 cut(s) 215, 231, 269, 425, 453, 644, 663
MboI GATC 7 cut(s) 213, 229, 267, 423, 451, 642, 661
MfeI CAATTG 1 cut(s) 827
MflI RGATCY 2 cut(s) 423, 661
MhlI GDGCHC 3 cut(s) 117, 444, 504
MluCI AATT 5 cut(s) 827, 849, 882, 940, 1001
Mly113I GGCGCC 1 cut(s) 303
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 305
Mph1103I ATGCAT 1 cut(s) 696
MseI TTAA 3 cut(s) 246, 795, 950
MslI CAYNNNNRTG 1 cut(s) 866
MspA1I CMGCKG 1 cut(s) 183
MspI CCGG 2 cut(s) 110, 846
MunI CAATTG 1 cut(s) 827
MvnI CGCG 3 cut(s) 149, 376, 378
MwoI GCNNNNNNNGC 4 cut(s) 311, 320, 329, 384
NarI GGCGCC 1 cut(s) 303
NdeI CATATG 1 cut(s) 1117
NdeII GATC 7 cut(s) 213, 229, 267, 423, 451, 642, 661
NlaIII CATG 3 cut(s) 580, 698, 785
NlaIV GGNNCC 2 cut(s) 124, 304
NruI TCGCGA 1 cut(s) 149
NsiI ATGCAT 1 cut(s) 696
NspI RCATGY 1 cut(s) 698
PaeR7I CTCGAG 1 cut(s) 485
PciSI GCTCTTC 1 cut(s) 76
PfeI GAWTC 4 cut(s) 170, 569, 709, 992
PflMI CCANNNNNTGG 2 cut(s) 208, 806
PkrI GCNGC 9 cut(s) 182, 325, 328, 331, 389, 413, 652, 820, 835
PleI GAGTC 1 cut(s) 454
PluTI GGCGCC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 454
Psp124BI GAGCTC 3 cut(s) 117, 444, 504
PspN4I GGNNCC 2 cut(s) 124, 304
PspPI GGNCC 1 cut(s) 51
PsuI RGATCY 2 cut(s) 423, 661
RruI TCGCGA 1 cut(s) 149
RsaI GTAC 2 cut(s) 545, 1081
RsaNI GTAC 2 cut(s) 544, 1080
RseI CAYNNNNRTG 1 cut(s) 866
SacI GAGCTC 3 cut(s) 117, 444, 504
SalI GTCGAC 1 cut(s) 1097
SapI GCTCTTC 1 cut(s) 76
SaqAI TTAA 3 cut(s) 246, 795, 950
SatI GCNGC 9 cut(s) 181, 324, 327, 330, 388, 412, 651, 819, 834
Sau3AI GATC 7 cut(s) 213, 229, 267, 423, 451, 642, 661
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 454
SduI GDGCHC 3 cut(s) 117, 444, 504
SfaNI GCATC 5 cut(s) 5, 246, 550, 681, 858
SfoI GGCGCC 1 cut(s) 304
Sfr274I CTCGAG 1 cut(s) 485
SlaI CTCGAG 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 866
SmlI CTYRAG 2 cut(s) 485, 1075
SmoI CTYRAG 2 cut(s) 485, 1075
Sse9I AATT 5 cut(s) 827, 849, 882, 940, 1001
SsiI CCGC 8 cut(s) 167, 183, 263, 290, 357, 363, 374, 412
SspDI GGCGCC 1 cut(s) 302
SspMI CTAG 4 cut(s) 42, 240, 536, 1094
SstI GAGCTC 3 cut(s) 117, 444, 504
TaaI ACNGT 5 cut(s) 418, 476, 754, 857, 1130
TaiI ACGT 1 cut(s) 194
TaqI TCGA 5 cut(s) 420, 471, 486, 1098, 1132
TasI AATT 5 cut(s) 827, 849, 882, 940, 1001
TatI WGTACW 1 cut(s) 1079
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 4 cut(s) 170, 569, 709, 992
Tru1I TTAA 3 cut(s) 246, 795, 950
Tru9I TTAA 3 cut(s) 246, 795, 950
TscAI CASTG 3 cut(s) 213, 862, 1117
TseI GCWGC 8 cut(s) 180, 323, 326, 329, 387, 650, 818, 833
TspDTI ATGAA 3 cut(s) 593, 624, 884
TspGWI ACGGA 1 cut(s) 1159
TspRI CASTG 3 cut(s) 213, 862, 1117
Van91I CCANNNNNTGG 2 cut(s) 208, 806
XapI RAATTY 3 cut(s) 849, 940, 1001
XceI RCATGY 1 cut(s) 698
XhoI CTCGAG 1 cut(s) 485
XmiI GTMKAC 1 cut(s) 1098
XspI CTAG 4 cut(s) 42, 240, 536, 1094
Zsp2I ATGCAT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.