pycom11g20920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0005528
Physical Location & Seq
Forward (+)
24069157 .. 24069670
514 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 375 bp
ATGACCCATGCATCATCGACCTACGTACCCATATCAGACAAGGATGCCCAGGCCAAGATGGTTCGGTTGGGCACCAGCATCATAAAACACGCAATTGAGGAGGGCCTTAATGGTATTCCAGGTTACAAAATTGTTGCGAGATCACTCCGCTTCTTAAACGGGTCTGATGAAACAGAAGTGGACGTGAAGGCACTGCGGGCAGATGTACGCCGGTTGGAGAAAGACTTCAATGAATACAAGAAGGAAGTAGCTGAGCTACAAGTGGAAGTGAAGGCATTGGCTGCTGATCAACTCAGATTGGAGAAACAACTCTGCGAGTATAGGATAAATAAGGCAAGTGCGGATTTAAATATTAGGTTTGCTTGCTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.96

Weight (kDa)

7.75

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AciI CCGC 3 cut(s) 148, 196, 341
AfaI GTAC 2 cut(s) 27, 207
AgsI TTSAA 1 cut(s) 229
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 2 cut(s) 48, 118
AluBI AGCT 2 cut(s) 251, 256
AluI AGCT 2 cut(s) 251, 256
AoxI GGCC 2 cut(s) 51, 103
ApeKI GCWGC 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 74
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
BanI GGYRCC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 50, 120
BclI TGATCA 1 cut(s) 286
BisI GCNGC 1 cut(s) 282
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 2 cut(s) 50, 120
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 2 cut(s) 50, 120
BmsI GCATC 3 cut(s) 20, 34, 87
Bpu1102I GCTNAGC 1 cut(s) 252
BsaAI YACGTR 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 48
Bse118I RCCGGY 1 cut(s) 210
BseBI CCWGG 2 cut(s) 50, 120
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 49
BseMII CTCAG 2 cut(s) 243, 307
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 2 cut(s) 53, 105
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 211
BsnI GGCC 2 cut(s) 53, 105
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 2 cut(s) 140, 286
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 3 cut(s) 148, 196, 341
BspANI GGCC 2 cut(s) 53, 105
BspCNI CTCAG 2 cut(s) 244, 306
BspLI GGNNCC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 2 cut(s) 140, 286
Bst2UI CCWGG 2 cut(s) 50, 120
BstAPI GCANNNNNTGC 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 198, 364
BstDEI CTNAG 2 cut(s) 252, 293
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 2 cut(s) 143, 289
BstMBI GATC 2 cut(s) 140, 286
BstMWI GCNNNNNNNGC 2 cut(s) 197, 281
BstNI CCWGG 2 cut(s) 50, 120
BstSCI CCNGG 2 cut(s) 48, 118
BstSLI GKGCMC 1 cut(s) 74
BstSNI TACGTA 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 268
BsuRI GGCC 2 cut(s) 53, 105
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 198, 364
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 26, 206
CviAII CATG 1 cut(s) 8
CviJI RGCY 5 cut(s) 53, 105, 251, 256, 281
CviKI_1 RGCY 5 cut(s) 53, 105, 251, 256, 281
CviQI GTAC 2 cut(s) 26, 206
DdeI CTNAG 2 cut(s) 252, 293
DpnI GATC 2 cut(s) 142, 288
DpnII GATC 2 cut(s) 140, 286
DraI TTTAAA 1 cut(s) 348
Eco105I TACGTA 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 48, 118
EcoT22I ATGCAT 1 cut(s) 13
FaeI CATG 1 cut(s) 11
FaiI YATR 5 cut(s) 9, 32, 83, 321, 371
FatI CATG 1 cut(s) 7
FauI CCCGC 1 cut(s) 189
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 282
HaeIII GGCC 2 cut(s) 53, 105
HapII CCGG 1 cut(s) 211
Hin1II CATG 1 cut(s) 11
HpaII CCGG 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 37, 166, 296
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 3 cut(s) 181, 235, 265
HpyCH4IV ACGT 2 cut(s) 24, 183
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 281
HpyF3I CTNAG 2 cut(s) 252, 293
HpySE526I ACGT 2 cut(s) 24, 183
Hsp92II CATG 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 2 cut(s) 140, 286
LpnPI CCDG 6 cut(s) 35, 62, 88, 105, 132, 224
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 3 cut(s) 20, 34, 87
MaeII ACGT 2 cut(s) 24, 183
MaeIII GTNAC 1 cut(s) 122
MalI GATC 2 cut(s) 142, 288
MboI GATC 2 cut(s) 140, 286
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 2 cut(s) 93, 129
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 2 cut(s) 91, 94
Mph1103I ATGCAT 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 3 cut(s) 108, 155, 347
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 2 cut(s) 50, 120
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 2 cut(s) 50, 120
MwoI GCNNNNNNNGC 2 cut(s) 197, 281
NdeII GATC 2 cut(s) 140, 286
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 283
Ppu21I YACGTR 1 cut(s) 25
Psp6I CCWGG 2 cut(s) 48, 118
PspGI CCWGG 2 cut(s) 48, 118
PspN4I GGNNCC 1 cut(s) 73
PspPI GGNCC 1 cut(s) 103
RsaI GTAC 2 cut(s) 27, 207
RsaNI GTAC 2 cut(s) 26, 206
SaqAI TTAA 3 cut(s) 108, 155, 347
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 2 cut(s) 140, 286
Sau96I GGNCC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 50, 120
SduI GDGCHC 1 cut(s) 74
SetI ASST 7 cut(s) 23, 27, 124, 186, 253, 258, 359
SfaNI GCATC 3 cut(s) 20, 34, 87
SmiI ATTTAAAT 1 cut(s) 348
SnaBI TACGTA 1 cut(s) 25
Sse9I AATT 2 cut(s) 93, 129
SsiI CCGC 3 cut(s) 148, 196, 341
SspI AATATT 1 cut(s) 352
StyD4I CCNGG 2 cut(s) 48, 118
SwaI ATTTAAAT 1 cut(s) 348
TaiI ACGT 2 cut(s) 27, 186
TaqI TCGA 1 cut(s) 17
TasI AATT 2 cut(s) 93, 129
Tru1I TTAA 3 cut(s) 108, 155, 347
Tru9I TTAA 3 cut(s) 108, 155, 347
TscAI CASTG 1 cut(s) 198
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 183, 246
TspRI CASTG 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.