Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Reverse (-)

24247127 .. 24248995

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g21110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGGTTTCTTAATGTTATATTCACAGTTACAACAGTTGTATTTCTCATGAGCATGAACATGCATGAGGCTAGTGCAGGCAGGGTGTTGCATGATGTGAACGGAAACTCAGTAAGCATGATGATGACGATGAGCAAAGACATCATGCTGATGGAGTCGAAGCAGAAGTCCAACCATCCTCCTCCCGGTGGATCTAATCCGAAGGTCCCTGCTATGTCGAATGATCTTGACGGTTCAATGATCAACCAAAGGAACTTTGCAGGCCACAACTTCTCCCATAAAGTTGGACTGGGGAAGTACATGAGGGATTCAGATTCAGCGCAGAGGGAATGTGAGAATTTGCAAGTTGTTTGGAGCCCTGATGCCAAATTGATCGCCGTTCTTGTAAGTATTTCATTGATTTTGCATGTAATCTTAGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIC1

Protein Analysis

142

Amino Acids

15.59

Weight (kDa)

7.97

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	185, 188
AgsI	TTSAA	1 cut(s)	237
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	262
ApoI	RAATTY	1 cut(s)	337
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	359
BccI	CCATC	2 cut(s)	145, 183
BceAI	ACGGC	1 cut(s)	362
BclI	TGATCA	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	207, 356
BmrFI	CCNGG	1 cut(s)	186
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 188
Bse1I	ACTGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	185, 188
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	171
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	185, 188
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	4 cut(s)	191, 223, 240, 372
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	207, 356
BspPI	GGATC	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	294
BssMI	GATC	4 cut(s)	191, 223, 240, 372
Bst4CI	ACNGT	3 cut(s)	28, 37, 233
BstC8I	GCNNGC	2 cut(s)	79, 262
BstDEI	CTNAG	2 cut(s)	109, 415
BstF5I	GGATG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	4 cut(s)	194, 226, 243, 375
BstMBI	GATC	4 cut(s)	191, 223, 240, 372
BstNSI	RCATGY	2 cut(s)	64, 410
BstSCI	CCNGG	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	191
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	79, 262
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	9 cut(s)	49, 55, 61, 65, 92, 118, 145, 301, 407
CviJI	RGCY	3 cut(s)	71, 264, 357
CviKI_1	RGCY	3 cut(s)	71, 264, 357
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	109, 415
DpnI	GATC	4 cut(s)	193, 225, 242, 374
DpnII	GATC	4 cut(s)	191, 223, 240, 372
Eco24I	GRGCYC	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	359
FaeI	CATG	9 cut(s)	52, 58, 64, 68, 95, 121, 148, 304, 410
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	9 cut(s)	48, 54, 60, 64, 91, 117, 144, 300, 406
FbaI	TGATCA	1 cut(s)	240
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	359
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	186
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	9 cut(s)	52, 58, 64, 68, 95, 121, 148, 304, 410
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HinfI	GANTC	3 cut(s)	155, 308, 314
HpaII	CCGG	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	201, 313
Hpy188III	TCNNGA	2 cut(s)	49, 227
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	3 cut(s)	28, 37, 233
HpyCH4V	TGCA	6 cut(s)	64, 77, 91, 260, 343, 406
HpyF3I	CTNAG	2 cut(s)	109, 415
Hsp92II	CATG	9 cut(s)	52, 58, 64, 68, 95, 121, 148, 304, 410
HspAI	GCGC	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	191, 223, 240, 372
LmnI	GCTCC	1 cut(s)	354
LpnPI	CCDG	7 cut(s)	63, 67, 199, 222, 246, 275, 372
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	4 cut(s)	193, 225, 242, 374
MboI	GATC	4 cut(s)	191, 223, 240, 372
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	2 cut(s)	337, 368
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	195, 265
MnlI	CCTC	5 cut(s)	61, 189, 192, 297, 318
Mph1103I	ATGCAT	1 cut(s)	66
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	4 cut(s)	53, 59, 122, 149
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	186
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	4 cut(s)	191, 223, 240, 372
NlaIII	CATG	9 cut(s)	52, 58, 64, 68, 95, 121, 148, 304, 410
NlaIV	GGNNCC	2 cut(s)	207, 356
NsiI	ATGCAT	1 cut(s)	66
NspI	RCATGY	2 cut(s)	64, 410
PagI	TCATGA	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	308, 314
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	207, 356
PspPI	GGNCC	1 cut(s)	205
PspPPI	RGGWCCY	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	4 cut(s)	53, 59, 122, 149
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	191, 223, 240, 372
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	2 cut(s)	8, 207
SfaNI	GCATC	1 cut(s)	352
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	4 cut(s)	53, 59, 122, 149
Sse9I	AATT	2 cut(s)	337, 368
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	3 cut(s)	28, 37, 233
TaqI	TCGA	2 cut(s)	158, 218
TasI	AATT	2 cut(s)	337, 368
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	2 cut(s)	308, 314
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	71, 384
TspGWI	ACGGA	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	2 cut(s)	64, 410
XspI	CTAG	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.