Rh6CG329800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002148
Physical Location & Seq
Forward (+)
51638582 .. 51639304
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG329800.1

Sequence Viewer

Length: 723 bp
ATGGGTGTTCTTAATGTTATCGGAGTTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGACGAGGAAGAAAACTTGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACCTAATGGTCACACAAACGTGCCTGGTCCTGCGACTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTACAGAAAACTCGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGTCAGCCTCCCCAGGGACCTAATCCTCCCACCAACGTGCCTGGTCCTGCGACTCCTACTAGCGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCAGACTACTACAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTTCCCAGGGACCTAATGGTAACACCAACGTGCCTGGTCCTGCGACTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACTTGACGAAGAACAAACTTTTTGTCTTAATGGAGTCGAAGCAGAGGGGTACTCCCCCTTCCGGTGGACCTAATCCGCCCACCAACACGCCTGGTCATAAGCCTCCTGCTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

25.05

Weight (kDa)

10.24

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 144
AciI CCGC 2 cut(s) 351, 650
AcyI GRCGYC 1 cut(s) 460
AfaI GTAC 1 cut(s) 625
AgsI TTSAA 1 cut(s) 702
AhlI ACTAGT 2 cut(s) 179, 515
AjnI CCWGG 6 cut(s) 160, 300, 328, 468, 496, 664
AleI CACNNNNGTG 3 cut(s) 155, 323, 491
AoxI GGCC 3 cut(s) 220, 388, 556
ApeKI GCWGC 4 cut(s) 191, 359, 527, 695
ArsI GACNNNNNNTTYG 2 cut(s) 582, 614
AspS9I GGNCC 7 cut(s) 137, 164, 305, 332, 473, 500, 641
AsuC2I CCSGG 1 cut(s) 132
AvaII GGWCC 7 cut(s) 137, 164, 305, 332, 473, 500, 641
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
BbvI GCAGC 4 cut(s) 178, 346, 514, 682
BciT130I CCWGG 6 cut(s) 162, 302, 330, 470, 498, 666
BcnI CCSGG 1 cut(s) 132
BcuI ACTAGT 2 cut(s) 179, 515
BfaI CTAG 4 cut(s) 180, 348, 516, 684
BfmI CTRYAG 3 cut(s) 231, 399, 567
BisI GCNGC 4 cut(s) 192, 360, 528, 696
BlsI GCNGC 4 cut(s) 193, 361, 529, 697
Bme1390I CCNGG 7 cut(s) 132, 162, 302, 330, 470, 498, 666
Bme18I GGWCC 7 cut(s) 137, 164, 305, 332, 473, 500, 641
BmgT120I GGNCC 7 cut(s) 137, 164, 305, 332, 473, 500, 641
BmiI GGNNCC 2 cut(s) 306, 474
BmrFI CCNGG 7 cut(s) 132, 162, 302, 330, 470, 498, 666
BplI GAGNNNNNCTC 2 cut(s) 610, 642
BpuMI CCSGG 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 460
BsaJI CCNNGG 4 cut(s) 300, 301, 468, 469
BsaWI WCCGGW 1 cut(s) 635
BseBI CCWGG 6 cut(s) 162, 302, 330, 470, 498, 666
BseDI CCNNGG 4 cut(s) 300, 301, 468, 469
BseMII CTCAG 1 cut(s) 60
BseXI GCAGC 4 cut(s) 178, 346, 514, 682
BshFI GGCC 3 cut(s) 222, 390, 558
BsiSI CCGG 2 cut(s) 132, 636
BslFI GGGAC 2 cut(s) 318, 486
BsmFI GGGAC 2 cut(s) 318, 486
BsnI GGCC 3 cut(s) 222, 390, 558
BspACI CCGC 2 cut(s) 351, 650
BspANI GGCC 3 cut(s) 222, 390, 558
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 306, 474
BssECI CCNNGG 4 cut(s) 300, 301, 468, 469
BssNI GRCGYC 1 cut(s) 460
Bst2UI CCWGG 6 cut(s) 162, 302, 330, 470, 498, 666
Bst4CI ACNGT 1 cut(s) 568
BstACI GRCGYC 1 cut(s) 460
BstC8I GCNNGC 5 cut(s) 59, 76, 220, 388, 556
BstDEI CTNAG 1 cut(s) 69
BstNI CCWGG 6 cut(s) 162, 302, 330, 470, 498, 666
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 7 cut(s) 130, 160, 300, 328, 468, 496, 664
BstSFI CTRYAG 3 cut(s) 231, 399, 567
BstV1I GCAGC 4 cut(s) 178, 346, 514, 682
BsuRI GGCC 3 cut(s) 222, 390, 558
BtsIMutI CAGTG 1 cut(s) 564
Cac8I GCNNGC 5 cut(s) 59, 76, 220, 388, 556
Cfr13I GGNCC 7 cut(s) 137, 164, 305, 332, 473, 500, 641
CseI GACGC 1 cut(s) 468
Csp6I GTAC 1 cut(s) 624
CviAII CATG 6 cut(s) 58, 89, 188, 356, 524, 692
CviJI RGCY 7 cut(s) 74, 119, 222, 295, 390, 558, 676
CviKI_1 RGCY 7 cut(s) 74, 119, 222, 295, 390, 558, 676
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 1 cut(s) 69
DrdI GACNNNNNNGTC 1 cut(s) 144
DseDI GACNNNNNNGTC 1 cut(s) 144
EciI GGCGGA 1 cut(s) 639
Eco47I GGWCC 7 cut(s) 137, 164, 305, 332, 473, 500, 641
EcoO109I RGGNCCY 2 cut(s) 305, 473
EcoRII CCWGG 6 cut(s) 160, 300, 328, 468, 496, 664
FaeI CATG 6 cut(s) 61, 92, 191, 359, 527, 695
FaiI YATR 8 cut(s) 53, 59, 90, 189, 357, 525, 672, 693
FaqI GGGAC 2 cut(s) 318, 486
FatI CATG 6 cut(s) 57, 88, 187, 355, 523, 691
Fnu4HI GCNGC 4 cut(s) 192, 360, 528, 696
Fsp4HI GCNGC 4 cut(s) 192, 360, 528, 696
FspBI CTAG 4 cut(s) 180, 348, 516, 684
GluI GCNGC 4 cut(s) 192, 360, 528, 696
HaeIII GGCC 3 cut(s) 222, 390, 558
HapII CCGG 2 cut(s) 132, 636
HgaI GACGC 1 cut(s) 468
Hin1I GRCGYC 1 cut(s) 460
Hin1II CATG 6 cut(s) 61, 92, 191, 359, 527, 695
HinfI GANTC 6 cut(s) 172, 272, 340, 440, 508, 608
HpaII CCGG 2 cut(s) 132, 636
Hpy166II GTNNAC 3 cut(s) 137, 458, 641
Hpy188I TCNGA 2 cut(s) 23, 70
Hpy8I GTNNAC 3 cut(s) 137, 458, 641
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 3 cut(s) 109, 474, 642
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4IV ACGT 3 cut(s) 156, 324, 492
HpyCH4V TGCA 8 cut(s) 61, 88, 194, 218, 362, 386, 530, 554
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 3 cut(s) 156, 324, 492
Hsp92I GRCGYC 1 cut(s) 460
Hsp92II CATG 6 cut(s) 61, 92, 191, 359, 527, 695
Lsp1109I GCAGC 4 cut(s) 178, 346, 514, 682
MaeI CTAG 4 cut(s) 180, 348, 516, 684
MaeII ACGT 3 cut(s) 156, 324, 492
MaeIII GTNAC 3 cut(s) 25, 146, 482
MboII GAAGA 6 cut(s) 110, 116, 124, 259, 427, 595
MfeI CAATTG 1 cut(s) 62
MluCI AATT 2 cut(s) 62, 718
MlyI GAGTC 6 cut(s) 166, 281, 334, 449, 502, 617
MnlI CCTC 7 cut(s) 64, 88, 138, 306, 324, 612, 687
MseI TTAA 9 cut(s) 12, 201, 266, 369, 434, 537, 602, 708, 721
MslI CAYNNNNRTG 4 cut(s) 56, 155, 323, 491
MspI CCGG 2 cut(s) 132, 636
MspR9I CCNGG 7 cut(s) 132, 162, 302, 330, 470, 498, 666
MunI CAATTG 1 cut(s) 62
MvaI CCWGG 6 cut(s) 162, 302, 330, 470, 498, 666
NciI CCSGG 1 cut(s) 132
NlaIII CATG 6 cut(s) 61, 92, 191, 359, 527, 695
NlaIV GGNNCC 2 cut(s) 306, 474
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 61
OliI CACNNNNGTG 3 cut(s) 155, 323, 491
PaeI GCATGC 1 cut(s) 61
PasI CCCWGGG 2 cut(s) 301, 469
PkrI GCNGC 4 cut(s) 193, 361, 529, 697
PleI GAGTC 6 cut(s) 166, 280, 334, 448, 502, 616
PpsI GAGTC 6 cut(s) 166, 280, 334, 448, 502, 616
PpuMI RGGWCCY 2 cut(s) 305, 473
Psp5II RGGWCCY 2 cut(s) 305, 473
Psp6I CCWGG 6 cut(s) 160, 300, 328, 468, 496, 664
PspGI CCWGG 6 cut(s) 160, 300, 328, 468, 496, 664
PspN4I GGNNCC 2 cut(s) 306, 474
PspPI GGNCC 7 cut(s) 137, 164, 305, 332, 473, 500, 641
PspPPI RGGWCCY 2 cut(s) 305, 473
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
RseI CAYNNNNRTG 4 cut(s) 56, 155, 323, 491
SaqAI TTAA 9 cut(s) 12, 201, 266, 369, 434, 537, 602, 708, 721
SatI GCNGC 4 cut(s) 192, 360, 528, 696
Sau96I GGNCC 7 cut(s) 137, 164, 305, 332, 473, 500, 641
SchI GAGTC 6 cut(s) 166, 281, 334, 449, 502, 617
ScrFI CCNGG 7 cut(s) 132, 162, 302, 330, 470, 498, 666
SetI ASST 9 cut(s) 142, 159, 289, 310, 327, 457, 478, 495, 646
SfcI CTRYAG 3 cut(s) 231, 399, 567
SinI GGWCC 7 cut(s) 137, 164, 305, 332, 473, 500, 641
SmiMI CAYNNNNRTG 4 cut(s) 56, 155, 323, 491
SpeI ACTAGT 2 cut(s) 179, 515
SphI GCATGC 1 cut(s) 61
Sse9I AATT 2 cut(s) 62, 718
SsiI CCGC 2 cut(s) 351, 650
SspMI CTAG 4 cut(s) 180, 348, 516, 684
StyD4I CCNGG 7 cut(s) 130, 160, 300, 328, 468, 496, 664
TaaI ACNGT 1 cut(s) 568
TaiI ACGT 3 cut(s) 159, 327, 495
TaqI TCGA 4 cut(s) 242, 275, 443, 611
TasI AATT 2 cut(s) 62, 718
Tru1I TTAA 9 cut(s) 12, 201, 266, 369, 434, 537, 602, 708, 721
Tru9I TTAA 9 cut(s) 12, 201, 266, 369, 434, 537, 602, 708, 721
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 4 cut(s) 191, 359, 527, 695
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 40
TspRI CASTG 1 cut(s) 571
VpaK11BI GGWCC 7 cut(s) 137, 164, 305, 332, 473, 500, 641
XceI RCATGY 1 cut(s) 61
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
XspI CTAG 4 cut(s) 180, 348, 516, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.