Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Forward (+)

9804338 .. 9805449

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG107900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGTGTTCTTAATGTTATCGGAGTTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGACGAGGACGAAAACTTGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACCTAATCCTACCACCAACGTGCCTGGTCCTGCGACTCCTACTAGCGGTCATACTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTACAGAAAACTTGACGAAGAACAAACATTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGTCAGCCTCCCCAGGGACCTAATCCTCCCACCAACGTGCCTGGTCCTGCGACTCCTACTAGCGGTCATGCTGTTGCAGGCCACACTACTACAGAAAACTTGACGAAGAACAAACTTTTCGTTTTGATGGAGTCGAAGCAGAAAGGTGGTCAGCCTCCCCAGGGACCTAATCCTCCCACCAACGTGCCTGGTCCTGCGACTCCCACTAGCGGTCATGCTGTTGCAGGCCACACTACTACAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTTCCCAGGGACCTAATGGTAACACCAACGTGCCTGGTCCTAAGCCTCCTACTAGTGGTTATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGATCCCCCTTCCGGTGGACATAATCCGACCACCACCACGCCTGGTCCTAAGCCTCCTGCTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

29.36

Weight (kDa)

9.96

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	183, 351, 498
AclWI	GGATC	1 cut(s)	746
AcyI	GRCGYC	1 cut(s)	586
AgsI	TTSAA	1 cut(s)	828
AhlI	ACTAGT	1 cut(s)	641
AjnI	CCWGG	8 cut(s)	160, 300, 328, 447, 475, 594, 622, 790
AleI	CACNNNNGTG	4 cut(s)	155, 323, 470, 617
AlwI	GGATC	1 cut(s)	746
AoxI	GGCC	4 cut(s)	220, 367, 514, 682
ApeKI	GCWGC	2 cut(s)	653, 821
AspS9I	GGNCC	9 cut(s)	137, 164, 305, 332, 452, 479, 599, 626, 794
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	761
AvaII	GGWCC	9 cut(s)	137, 164, 305, 332, 452, 479, 599, 626, 794
BbvI	GCAGC	2 cut(s)	640, 808
BccI	CCATC	1 cut(s)	409
BciT130I	CCWGG	8 cut(s)	162, 302, 330, 449, 477, 596, 624, 792
BcnI	CCSGG	1 cut(s)	132
BcuI	ACTAGT	1 cut(s)	641
BfaI	CTAG	5 cut(s)	180, 348, 495, 642, 810
BfmI	CTRYAG	4 cut(s)	231, 378, 525, 693
BisI	GCNGC	2 cut(s)	654, 822
BlsI	GCNGC	2 cut(s)	655, 823
Bme1390I	CCNGG	9 cut(s)	132, 162, 302, 330, 449, 477, 596, 624, 792
Bme18I	GGWCC	9 cut(s)	137, 164, 305, 332, 452, 479, 599, 626, 794
BmgT120I	GGNCC	9 cut(s)	137, 164, 305, 332, 452, 479, 599, 626, 794
BmiI	GGNNCC	3 cut(s)	306, 453, 600
BmrFI	CCNGG	9 cut(s)	132, 162, 302, 330, 449, 477, 596, 624, 792
Bpu10I	CCTNAGC	2 cut(s)	630, 798
BpuMI	CCSGG	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	586
BsaJI	CCNNGG	6 cut(s)	300, 301, 447, 448, 594, 595
BsaWI	WCCGGW	1 cut(s)	761
BseBI	CCWGG	8 cut(s)	162, 302, 330, 449, 477, 596, 624, 792
BseDI	CCNNGG	6 cut(s)	300, 301, 447, 448, 594, 595
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	640, 808
BshFI	GGCC	4 cut(s)	222, 369, 516, 684
BsiSI	CCGG	2 cut(s)	132, 762
BslFI	GGGAC	3 cut(s)	318, 465, 612
BsmFI	GGGAC	3 cut(s)	318, 465, 612
BsnI	GGCC	4 cut(s)	222, 369, 516, 684
Bsp143I	GATC	1 cut(s)	751
BspACI	CCGC	3 cut(s)	183, 351, 498
BspANI	GGCC	4 cut(s)	222, 369, 516, 684
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	3 cut(s)	306, 453, 600
BspPI	GGATC	1 cut(s)	746
BssECI	CCNNGG	6 cut(s)	300, 301, 447, 448, 594, 595
BssMI	GATC	1 cut(s)	751
BssNI	GRCGYC	1 cut(s)	586
Bst2UI	CCWGG	8 cut(s)	162, 302, 330, 449, 477, 596, 624, 792
Bst4CI	ACNGT	1 cut(s)	694
BstACI	GRCGYC	1 cut(s)	586
BstC8I	GCNNGC	6 cut(s)	59, 76, 220, 367, 514, 682
BstDEI	CTNAG	3 cut(s)	69, 630, 798
BstKTI	GATC	1 cut(s)	754
BstMBI	GATC	1 cut(s)	751
BstNI	CCWGG	8 cut(s)	162, 302, 330, 449, 477, 596, 624, 792
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	9 cut(s)	130, 160, 300, 328, 447, 475, 594, 622, 790
BstSFI	CTRYAG	4 cut(s)	231, 378, 525, 693
BstV1I	GCAGC	2 cut(s)	640, 808
BsuRI	GGCC	4 cut(s)	222, 369, 516, 684
BtsIMutI	CAGTG	1 cut(s)	690
Cac8I	GCNNGC	6 cut(s)	59, 76, 220, 367, 514, 682
Cfr13I	GGNCC	9 cut(s)	137, 164, 305, 332, 452, 479, 599, 626, 794
CseI	GACGC	1 cut(s)	594
CviAII	CATG	5 cut(s)	58, 89, 356, 503, 818
DdeI	CTNAG	3 cut(s)	69, 630, 798
DpnI	GATC	1 cut(s)	753
DpnII	GATC	1 cut(s)	751
Eco47I	GGWCC	9 cut(s)	137, 164, 305, 332, 452, 479, 599, 626, 794
EcoO109I	RGGNCCY	3 cut(s)	305, 452, 599
EcoRII	CCWGG	8 cut(s)	160, 300, 328, 447, 475, 594, 622, 790
FaeI	CATG	5 cut(s)	61, 92, 359, 506, 821
FaiI	YATR	9 cut(s)	53, 59, 90, 189, 357, 504, 651, 771, 819
FaqI	GGGAC	3 cut(s)	318, 465, 612
FatI	CATG	5 cut(s)	57, 88, 355, 502, 817
Fnu4HI	GCNGC	2 cut(s)	654, 822
Fsp4HI	GCNGC	2 cut(s)	654, 822
FspBI	CTAG	5 cut(s)	180, 348, 495, 642, 810
GluI	GCNGC	2 cut(s)	654, 822
HaeIII	GGCC	4 cut(s)	222, 369, 516, 684
HapII	CCGG	2 cut(s)	132, 762
HgaI	GACGC	1 cut(s)	594
Hin1I	GRCGYC	1 cut(s)	586
Hin1II	CATG	5 cut(s)	61, 92, 359, 506, 821
HinfI	GANTC	7 cut(s)	172, 272, 340, 419, 487, 566, 734
HpaII	CCGG	2 cut(s)	132, 762
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	3 cut(s)	137, 584, 767
Hpy188I	TCNGA	3 cut(s)	23, 70, 777
Hpy8I	GTNNAC	3 cut(s)	137, 584, 767
HpyAV	CCTTC	3 cut(s)	109, 600, 768
HpyCH4III	ACNGT	1 cut(s)	694
HpyCH4IV	ACGT	4 cut(s)	156, 324, 471, 618
HpyCH4V	TGCA	8 cut(s)	61, 88, 194, 218, 365, 512, 656, 680
HpyF3I	CTNAG	3 cut(s)	69, 630, 798
HpySE526I	ACGT	4 cut(s)	156, 324, 471, 618
Hsp92I	GRCGYC	1 cut(s)	586
Hsp92II	CATG	5 cut(s)	61, 92, 359, 506, 821
Kzo9I	GATC	1 cut(s)	751
Lsp1109I	GCAGC	2 cut(s)	640, 808
MaeI	CTAG	5 cut(s)	180, 348, 495, 642, 810
MaeII	ACGT	4 cut(s)	156, 324, 471, 618
MaeIII	GTNAC	2 cut(s)	25, 608
MalI	GATC	1 cut(s)	753
MboI	GATC	1 cut(s)	751
MboII	GAAGA	6 cut(s)	116, 124, 259, 406, 553, 721
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	2 cut(s)	62, 844
MlyI	GAGTC	7 cut(s)	166, 281, 334, 428, 481, 575, 743
MmeI	TCCRAC	1 cut(s)	800
MnlI	CCTC	9 cut(s)	64, 88, 138, 306, 324, 453, 471, 645, 813
MseI	TTAA	8 cut(s)	12, 201, 266, 560, 663, 728, 834, 847
MslI	CAYNNNNRTG	5 cut(s)	56, 155, 323, 470, 617
MspI	CCGG	2 cut(s)	132, 762
MspR9I	CCNGG	9 cut(s)	132, 162, 302, 330, 449, 477, 596, 624, 792
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	8 cut(s)	162, 302, 330, 449, 477, 596, 624, 792
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	751
NlaIII	CATG	5 cut(s)	61, 92, 359, 506, 821
NlaIV	GGNNCC	3 cut(s)	306, 453, 600
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	4 cut(s)	155, 323, 470, 617
PaeI	GCATGC	1 cut(s)	61
PasI	CCCWGGG	3 cut(s)	301, 448, 595
PkrI	GCNGC	2 cut(s)	655, 823
PleI	GAGTC	7 cut(s)	166, 280, 334, 427, 481, 574, 742
PpsI	GAGTC	7 cut(s)	166, 280, 334, 427, 481, 574, 742
PpuMI	RGGWCCY	3 cut(s)	305, 452, 599
Psp5II	RGGWCCY	3 cut(s)	305, 452, 599
Psp6I	CCWGG	8 cut(s)	160, 300, 328, 447, 475, 594, 622, 790
PspGI	CCWGG	8 cut(s)	160, 300, 328, 447, 475, 594, 622, 790
PspN4I	GGNNCC	3 cut(s)	306, 453, 600
PspPI	GGNCC	9 cut(s)	137, 164, 305, 332, 452, 479, 599, 626, 794
PspPPI	RGGWCCY	3 cut(s)	305, 452, 599
RseI	CAYNNNNRTG	5 cut(s)	56, 155, 323, 470, 617
SaqAI	TTAA	8 cut(s)	12, 201, 266, 560, 663, 728, 834, 847
SatI	GCNGC	2 cut(s)	654, 822
Sau3AI	GATC	1 cut(s)	751
Sau96I	GGNCC	9 cut(s)	137, 164, 305, 332, 452, 479, 599, 626, 794
SchI	GAGTC	7 cut(s)	166, 281, 334, 428, 481, 575, 743
ScrFI	CCNGG	9 cut(s)	132, 162, 302, 330, 449, 477, 596, 624, 792
SfcI	CTRYAG	4 cut(s)	231, 378, 525, 693
SinI	GGWCC	9 cut(s)	137, 164, 305, 332, 452, 479, 599, 626, 794
SmiMI	CAYNNNNRTG	5 cut(s)	56, 155, 323, 470, 617
SpeI	ACTAGT	1 cut(s)	641
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	2 cut(s)	62, 844
SsiI	CCGC	3 cut(s)	183, 351, 498
SspMI	CTAG	5 cut(s)	180, 348, 495, 642, 810
StyD4I	CCNGG	9 cut(s)	130, 160, 300, 328, 447, 475, 594, 622, 790
TaaI	ACNGT	1 cut(s)	694
TaiI	ACGT	4 cut(s)	159, 327, 474, 621
TaqI	TCGA	4 cut(s)	275, 422, 569, 737
TasI	AATT	2 cut(s)	62, 844
Tru1I	TTAA	8 cut(s)	12, 201, 266, 560, 663, 728, 834, 847
Tru9I	TTAA	8 cut(s)	12, 201, 266, 560, 663, 728, 834, 847
TscAI	CASTG	1 cut(s)	697
TseI	GCWGC	2 cut(s)	653, 821
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	697
VpaK11BI	GGWCC	9 cut(s)	137, 164, 305, 332, 452, 479, 599, 626, 794
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XspI	CTAG	5 cut(s)	180, 348, 495, 642, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.