Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Forward (+)

10322653 .. 10323713

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG112000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGTGTTCTTAATGTTATCGGAGCTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGACGAGGACGAAAACTTGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACCTAATCCTACCACCAACGTGCCTGGTCCTGCGACTCCTACTAGCGGTCATACTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTACAGAAAACTTGACGAAGAACAAACATTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGTCAGCCTCCCCAGGGACCTAATCCTCCTACCAACGTGCCTGGTCCTGCGACTCCTACTAGCGGTCATGCTGTTGCAGGCCACACTACTACAGAAAACTTGACGAAGAACAAACTTTTTGTTTTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTTCCCAGGGACCTAATGGTAACACCAACGTGCCTGGTCCTAAGCCTCCTACTAGTGGTTATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGATCCCCCTTCCGGTGGACATAATCCGACCACCACCACGCCTGGTCCTAAGCCTCCTGCTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

24.32

Weight (kDa)

9.94

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	183, 351
AclWI	GGATC	1 cut(s)	599
AcyI	GRCGYC	1 cut(s)	439
AgsI	TTSAA	1 cut(s)	681
AhlI	ACTAGT	1 cut(s)	494
AjnI	CCWGG	6 cut(s)	160, 300, 328, 447, 475, 643
AleI	CACNNNNGTG	2 cut(s)	155, 470
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
AlwI	GGATC	1 cut(s)	599
AoxI	GGCC	3 cut(s)	220, 367, 535
ApeKI	GCWGC	2 cut(s)	506, 674
AspS9I	GGNCC	7 cut(s)	137, 164, 305, 332, 452, 479, 647
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	614
AvaII	GGWCC	7 cut(s)	137, 164, 305, 332, 452, 479, 647
BbvI	GCAGC	2 cut(s)	493, 661
BciT130I	CCWGG	6 cut(s)	162, 302, 330, 449, 477, 645
BcnI	CCSGG	1 cut(s)	132
BcuI	ACTAGT	1 cut(s)	494
BfaI	CTAG	4 cut(s)	180, 348, 495, 663
BfmI	CTRYAG	4 cut(s)	27, 231, 378, 546
BisI	GCNGC	2 cut(s)	507, 675
BlsI	GCNGC	2 cut(s)	508, 676
Bme1390I	CCNGG	7 cut(s)	132, 162, 302, 330, 449, 477, 645
Bme18I	GGWCC	7 cut(s)	137, 164, 305, 332, 452, 479, 647
BmgT120I	GGNCC	7 cut(s)	137, 164, 305, 332, 452, 479, 647
BmiI	GGNNCC	2 cut(s)	306, 453
BmrFI	CCNGG	7 cut(s)	132, 162, 302, 330, 449, 477, 645
Bpu10I	CCTNAGC	2 cut(s)	483, 651
BpuMI	CCSGG	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	439
BsaJI	CCNNGG	4 cut(s)	300, 301, 447, 448
BsaWI	WCCGGW	1 cut(s)	614
BseBI	CCWGG	6 cut(s)	162, 302, 330, 449, 477, 645
BseDI	CCNNGG	4 cut(s)	300, 301, 447, 448
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	493, 661
BshFI	GGCC	3 cut(s)	222, 369, 537
BsiSI	CCGG	2 cut(s)	132, 615
BslFI	GGGAC	2 cut(s)	318, 465
BsmFI	GGGAC	2 cut(s)	318, 465
BsnI	GGCC	3 cut(s)	222, 369, 537
Bsp143I	GATC	1 cut(s)	604
BspACI	CCGC	2 cut(s)	183, 351
BspANI	GGCC	3 cut(s)	222, 369, 537
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	306, 453
BspPI	GGATC	1 cut(s)	599
BssECI	CCNNGG	4 cut(s)	300, 301, 447, 448
BssMI	GATC	1 cut(s)	604
BssNI	GRCGYC	1 cut(s)	439
Bst2UI	CCWGG	6 cut(s)	162, 302, 330, 449, 477, 645
Bst4CI	ACNGT	1 cut(s)	547
BstACI	GRCGYC	1 cut(s)	439
BstC8I	GCNNGC	5 cut(s)	59, 76, 220, 367, 535
BstDEI	CTNAG	3 cut(s)	69, 483, 651
BstKTI	GATC	1 cut(s)	607
BstMBI	GATC	1 cut(s)	604
BstNI	CCWGG	6 cut(s)	162, 302, 330, 449, 477, 645
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	7 cut(s)	130, 160, 300, 328, 447, 475, 643
BstSFI	CTRYAG	4 cut(s)	27, 231, 378, 546
BstV1I	GCAGC	2 cut(s)	493, 661
BsuRI	GGCC	3 cut(s)	222, 369, 537
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	5 cut(s)	59, 76, 220, 367, 535
Cfr13I	GGNCC	7 cut(s)	137, 164, 305, 332, 452, 479, 647
CseI	GACGC	1 cut(s)	447
CviAII	CATG	4 cut(s)	58, 89, 356, 671
CviJI	RGCY	9 cut(s)	26, 74, 119, 222, 295, 369, 487, 537, 655
CviKI_1	RGCY	9 cut(s)	26, 74, 119, 222, 295, 369, 487, 537, 655
DdeI	CTNAG	3 cut(s)	69, 483, 651
DpnI	GATC	1 cut(s)	606
DpnII	GATC	1 cut(s)	604
Eco47I	GGWCC	7 cut(s)	137, 164, 305, 332, 452, 479, 647
EcoO109I	RGGNCCY	2 cut(s)	305, 452
EcoRII	CCWGG	6 cut(s)	160, 300, 328, 447, 475, 643
FaeI	CATG	4 cut(s)	61, 92, 359, 674
FaiI	YATR	8 cut(s)	53, 59, 90, 189, 357, 504, 624, 672
FaqI	GGGAC	2 cut(s)	318, 465
FatI	CATG	4 cut(s)	57, 88, 355, 670
Fnu4HI	GCNGC	2 cut(s)	507, 675
Fsp4HI	GCNGC	2 cut(s)	507, 675
FspBI	CTAG	4 cut(s)	180, 348, 495, 663
GluI	GCNGC	2 cut(s)	507, 675
HaeIII	GGCC	3 cut(s)	222, 369, 537
HapII	CCGG	2 cut(s)	132, 615
HgaI	GACGC	1 cut(s)	447
Hin1I	GRCGYC	1 cut(s)	439
Hin1II	CATG	4 cut(s)	61, 92, 359, 674
HinfI	GANTC	5 cut(s)	172, 272, 340, 419, 587
HpaII	CCGG	2 cut(s)	132, 615
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	3 cut(s)	137, 437, 620
Hpy188I	TCNGA	3 cut(s)	23, 70, 630
Hpy8I	GTNNAC	3 cut(s)	137, 437, 620
HpyAV	CCTTC	3 cut(s)	109, 453, 621
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	3 cut(s)	156, 324, 471
HpyCH4V	TGCA	7 cut(s)	61, 88, 194, 218, 365, 509, 533
HpyF3I	CTNAG	3 cut(s)	69, 483, 651
HpySE526I	ACGT	3 cut(s)	156, 324, 471
Hsp92I	GRCGYC	1 cut(s)	439
Hsp92II	CATG	4 cut(s)	61, 92, 359, 674
Kzo9I	GATC	1 cut(s)	604
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	2 cut(s)	493, 661
MaeI	CTAG	4 cut(s)	180, 348, 495, 663
MaeII	ACGT	3 cut(s)	156, 324, 471
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	1 cut(s)	606
MboI	GATC	1 cut(s)	604
MboII	GAAGA	5 cut(s)	116, 124, 259, 406, 574
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	2 cut(s)	62, 697
MlyI	GAGTC	5 cut(s)	166, 281, 334, 428, 596
MmeI	TCCRAC	1 cut(s)	653
MnlI	CCTC	7 cut(s)	64, 88, 138, 306, 324, 498, 666
MseI	TTAA	8 cut(s)	12, 201, 266, 413, 516, 581, 687, 700
MslI	CAYNNNNRTG	3 cut(s)	56, 155, 470
MspI	CCGG	2 cut(s)	132, 615
MspR9I	CCNGG	7 cut(s)	132, 162, 302, 330, 449, 477, 645
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	6 cut(s)	162, 302, 330, 449, 477, 645
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	604
NlaIII	CATG	4 cut(s)	61, 92, 359, 674
NlaIV	GGNNCC	2 cut(s)	306, 453
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	2 cut(s)	155, 470
PaeI	GCATGC	1 cut(s)	61
PasI	CCCWGGG	2 cut(s)	301, 448
PkrI	GCNGC	2 cut(s)	508, 676
PleI	GAGTC	5 cut(s)	166, 280, 334, 427, 595
PpsI	GAGTC	5 cut(s)	166, 280, 334, 427, 595
PpuMI	RGGWCCY	2 cut(s)	305, 452
Psp5II	RGGWCCY	2 cut(s)	305, 452
Psp6I	CCWGG	6 cut(s)	160, 300, 328, 447, 475, 643
PspGI	CCWGG	6 cut(s)	160, 300, 328, 447, 475, 643
PspN4I	GGNNCC	2 cut(s)	306, 453
PspPI	GGNCC	7 cut(s)	137, 164, 305, 332, 452, 479, 647
PspPPI	RGGWCCY	2 cut(s)	305, 452
RseI	CAYNNNNRTG	3 cut(s)	56, 155, 470
SaqAI	TTAA	8 cut(s)	12, 201, 266, 413, 516, 581, 687, 700
SatI	GCNGC	2 cut(s)	507, 675
Sau3AI	GATC	1 cut(s)	604
Sau96I	GGNCC	7 cut(s)	137, 164, 305, 332, 452, 479, 647
SchI	GAGTC	5 cut(s)	166, 281, 334, 428, 596
ScrFI	CCNGG	7 cut(s)	132, 162, 302, 330, 449, 477, 645
SfcI	CTRYAG	4 cut(s)	27, 231, 378, 546
SinI	GGWCC	7 cut(s)	137, 164, 305, 332, 452, 479, 647
SmiMI	CAYNNNNRTG	3 cut(s)	56, 155, 470
SpeI	ACTAGT	1 cut(s)	494
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	2 cut(s)	62, 697
SsiI	CCGC	2 cut(s)	183, 351
SspMI	CTAG	4 cut(s)	180, 348, 495, 663
StyD4I	CCNGG	7 cut(s)	130, 160, 300, 328, 447, 475, 643
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	3 cut(s)	159, 327, 474
TaqI	TCGA	3 cut(s)	275, 422, 590
TasI	AATT	2 cut(s)	62, 697
Tru1I	TTAA	8 cut(s)	12, 201, 266, 413, 516, 581, 687, 700
Tru9I	TTAA	8 cut(s)	12, 201, 266, 413, 516, 581, 687, 700
TscAI	CASTG	1 cut(s)	550
TseI	GCWGC	2 cut(s)	506, 674
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	550
VpaK11BI	GGWCC	7 cut(s)	137, 164, 305, 332, 452, 479, 647
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XspI	CTAG	4 cut(s)	180, 348, 495, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.