Rh6BG161400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002148
Physical Location & Seq
Forward (+)
26188916 .. 26189437
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG161400.1

Sequence Viewer

Length: 522 bp
ATGGGTGTTCTTAATGTTATTGGAGTTACAGTAGTTCTACTGCTATTTTTCCTAAGCATGCACTTGTCCGAGGCTGGCAGGATGTTGCATGACGAGGAAGAAAACTCGACGACGAACAAACTTTTCGTTTTAACGGAGTCGAAGCAGAAGGGTATTCCCCCTCCCGATGGTCCTAATGGGCACACCGGCAAGCCTGGTCCTACGACTTCTACTAGTGGTCATGCTACTTCAACCATTAACCAAAGAAACTTTGCAGGCCAAACTACTATAGAAAACTCGACGATGAACAAACTTTTCGTTTTAACGGAGTCGAAGCAGAAGGGTATTCCCCCTCCCGATGGTCCTAATGGGCACACCGGCAAGCCTGGTCCTACGACTTCTACTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTATAGAAAACTCGACGACGAACAAACTTTTCGTTTTAACGGAGTCGAGGCAGAAGGGTGTTCCCCCTCCCGATGGTTCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.28

Weight (kDa)

8.11

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 3 cut(s) 167, 338, 509
AgsI TTSAA 2 cut(s) 231, 402
AhlI ACTAGT 2 cut(s) 212, 383
AjnI CCWGG 2 cut(s) 193, 364
AoxI GGCC 2 cut(s) 256, 427
ApeKI GCWGC 1 cut(s) 395
AspS9I GGNCC 4 cut(s) 170, 197, 341, 368
AvaII GGWCC 4 cut(s) 170, 197, 341, 368
BaeGI GKGCMC 2 cut(s) 183, 354
BbvI GCAGC 1 cut(s) 382
BccI CCATC 3 cut(s) 161, 332, 503
BciT130I CCWGG 2 cut(s) 195, 366
BcuI ACTAGT 2 cut(s) 212, 383
BfaI CTAG 2 cut(s) 213, 384
BfmI CTRYAG 2 cut(s) 267, 438
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
Bme1390I CCNGG 2 cut(s) 195, 366
Bme18I GGWCC 4 cut(s) 170, 197, 341, 368
BmgT120I GGNCC 4 cut(s) 170, 197, 341, 368
BmrFI CCNGG 2 cut(s) 195, 366
Bpu10I CCTNAGC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 338, 509
Bse118I RCCGGY 2 cut(s) 185, 356
BseBI CCWGG 2 cut(s) 195, 366
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 167, 338, 509
BseSI GKGCMC 2 cut(s) 183, 354
BseXI GCAGC 1 cut(s) 382
BshFI GGCC 2 cut(s) 258, 429
BsiSI CCGG 2 cut(s) 186, 357
BslI CCNNNNNNNGG 3 cut(s) 167, 338, 509
BsnI GGCC 2 cut(s) 258, 429
Bsp1286I GDGCHC 2 cut(s) 183, 354
BspANI GGCC 2 cut(s) 258, 429
BsrFI RCCGGY 2 cut(s) 185, 356
BssAI RCCGGY 2 cut(s) 185, 356
BssECI CCNNGG 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 195, 366
Bst4CI ACNGT 1 cut(s) 31
BstC8I GCNNGC 6 cut(s) 59, 76, 191, 256, 362, 427
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 87
BstNI CCWGG 2 cut(s) 195, 366
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 193, 364
BstSFI CTRYAG 2 cut(s) 267, 438
BstSLI GKGCMC 2 cut(s) 183, 354
BstV1I GCAGC 1 cut(s) 382
BsuRI GGCC 2 cut(s) 258, 429
BtsCI GGATG 1 cut(s) 87
Cac8I GCNNGC 6 cut(s) 59, 76, 191, 256, 362, 427
Cfr10I RCCGGY 2 cut(s) 185, 356
Cfr13I GGNCC 4 cut(s) 170, 197, 341, 368
CviAII CATG 4 cut(s) 58, 89, 221, 392
CviJI RGCY 5 cut(s) 74, 193, 258, 364, 429
CviKI_1 RGCY 5 cut(s) 74, 193, 258, 364, 429
DdeI CTNAG 1 cut(s) 53
Eco47I GGWCC 4 cut(s) 170, 197, 341, 368
EcoRII CCWGG 2 cut(s) 193, 364
FaeI CATG 4 cut(s) 61, 92, 224, 395
FaiI YATR 6 cut(s) 59, 90, 222, 269, 393, 440
FatI CATG 4 cut(s) 57, 88, 220, 391
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 396
FspBI CTAG 2 cut(s) 213, 384
GluI GCNGC 1 cut(s) 396
HaeIII GGCC 2 cut(s) 258, 429
HapII CCGG 2 cut(s) 186, 357
Hin1II CATG 4 cut(s) 61, 92, 224, 395
HinfI GANTC 3 cut(s) 137, 308, 479
HpaII CCGG 2 cut(s) 186, 357
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 3 cut(s) 164, 335, 506
Hpy99I CGWCG 5 cut(s) 112, 115, 283, 454, 457
HpyAV CCTTC 3 cut(s) 142, 313, 484
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 4 cut(s) 61, 88, 254, 425
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 4 cut(s) 61, 92, 224, 395
Lsp1109I GCAGC 1 cut(s) 382
MaeI CTAG 2 cut(s) 213, 384
MaeIII GTNAC 1 cut(s) 25
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 2 cut(s) 183, 354
MluCI AATT 1 cut(s) 517
MlyI GAGTC 3 cut(s) 146, 317, 488
MnlI CCTC 6 cut(s) 64, 88, 171, 342, 477, 513
MseI TTAA 7 cut(s) 12, 131, 237, 302, 408, 473, 520
MspI CCGG 2 cut(s) 186, 357
MspR9I CCNGG 2 cut(s) 195, 366
MvaI CCWGG 2 cut(s) 195, 366
NlaIII CATG 4 cut(s) 61, 92, 224, 395
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 397
PleI GAGTC 3 cut(s) 145, 316, 487
PpsI GAGTC 3 cut(s) 145, 316, 487
Psp6I CCWGG 2 cut(s) 193, 364
PspGI CCWGG 2 cut(s) 193, 364
PspPI GGNCC 4 cut(s) 170, 197, 341, 368
SaqAI TTAA 7 cut(s) 12, 131, 237, 302, 408, 473, 520
SatI GCNGC 1 cut(s) 396
Sau96I GGNCC 4 cut(s) 170, 197, 341, 368
SchI GAGTC 3 cut(s) 146, 317, 488
ScrFI CCNGG 2 cut(s) 195, 366
SduI GDGCHC 2 cut(s) 183, 354
SfcI CTRYAG 2 cut(s) 267, 438
SinI GGWCC 4 cut(s) 170, 197, 341, 368
SpeI ACTAGT 2 cut(s) 212, 383
SphI GCATGC 1 cut(s) 61
Sse9I AATT 1 cut(s) 517
SspMI CTAG 2 cut(s) 213, 384
StyD4I CCNGG 2 cut(s) 193, 364
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 6 cut(s) 107, 140, 278, 311, 449, 482
TasI AATT 1 cut(s) 517
Tru1I TTAA 7 cut(s) 12, 131, 237, 302, 408, 473, 520
Tru9I TTAA 7 cut(s) 12, 131, 237, 302, 408, 473, 520
TseI GCWGC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 299
TspGWI ACGGA 3 cut(s) 149, 320, 491
VpaK11BI GGWCC 4 cut(s) 170, 197, 341, 368
XceI RCATGY 1 cut(s) 61
XspI CTAG 2 cut(s) 213, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.