Rh6CG324900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002148
Physical Location & Seq
Forward (+)
51129087 .. 51129886
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG324900.1

Sequence Viewer

Length: 729 bp
ATGGGTGTTCTTAATGTTATTGGAGTTACAGCAGTTGTACTACTATTTTTCATAAGCATGCACTTGTCCGAGGCTGGCAGGATGTTGCATGACGAGGAAGAAAACTCGACGAAGAACGAACTTTTCGTGTTAATGGAGTCGAAGCAGAAAGGTGTTCCCCCTCCCGATGGTCCTAATGGGCCCACCAACAAGCCCGGTCCTACGACTCCTCCTGGTGTTCATGCTGCTTCAACCATTAACCAAAAAAAGTTTGCAGGCCACACTACTATAGAAAACTCGACGACGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAGGGTGTTCCCCCTCCCGATGGTCCTAATGGGCACACCAACATGCCTGGTCCTACGACTCCTACTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTATAGAAAACTCGACGATGAAGGAGTCGAAGCAGAAGGGTGTTCCCCCTCCCGATGGTCCTAACGAGCACACCAACATGCCTGGACGTCCAACGACTCCTACTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTATAGAAAACTCGACGACGAACAAACTTTTCATTTTAATGGAGTCGAAGCAGAAGGGTGTTTCCCCTCCCGATGGTCCTAATGGGCACACCAACAAGCCTGGTCCTACGACTCCTACTAATGGTGATGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

25.48

Weight (kDa)

8.05

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 526
AcyI GRCGYC 1 cut(s) 523
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 7 cut(s) 167, 338, 386, 491, 542, 665, 713
AgsI TTSAA 3 cut(s) 231, 402, 558
AhlI ACTAGT 2 cut(s) 383, 539
AjnI CCWGG 4 cut(s) 211, 364, 517, 691
Alw21I GWGCWC 1 cut(s) 507
AoxI GGCC 4 cut(s) 179, 256, 427, 583
ApaI GGGCCC 1 cut(s) 183
ApeKI GCWGC 4 cut(s) 224, 395, 551, 722
AspS9I GGNCC 9 cut(s) 170, 179, 180, 197, 341, 368, 494, 668, 695
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 728
AvaII GGWCC 7 cut(s) 170, 197, 341, 368, 494, 668, 695
BaeGI GKGCMC 3 cut(s) 183, 354, 681
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 4 cut(s) 211, 382, 538, 709
BccI CCATC 4 cut(s) 161, 332, 485, 659
BciT130I CCWGG 4 cut(s) 213, 366, 519, 693
BcnI CCSGG 1 cut(s) 195
BcuI ACTAGT 2 cut(s) 383, 539
BfaI CTAG 2 cut(s) 384, 540
BfmI CTRYAG 3 cut(s) 267, 438, 594
BisI GCNGC 4 cut(s) 225, 396, 552, 723
BlsI GCNGC 4 cut(s) 226, 397, 553, 724
Bme1390I CCNGG 5 cut(s) 195, 213, 366, 519, 693
Bme18I GGWCC 7 cut(s) 170, 197, 341, 368, 494, 668, 695
BmgT120I GGNCC 9 cut(s) 170, 179, 180, 197, 341, 368, 494, 668, 695
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 5 cut(s) 195, 213, 366, 519, 693
BmsI GCATC 1 cut(s) 709
BpuMI CCSGG 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 523
BsaJI CCNNGG 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 7 cut(s) 167, 338, 386, 491, 542, 665, 713
BseBI CCWGG 4 cut(s) 213, 366, 519, 693
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 7 cut(s) 167, 338, 386, 491, 542, 665, 713
BseRI GAGGAG 1 cut(s) 198
BseSI GKGCMC 3 cut(s) 183, 354, 681
BseXI GCAGC 4 cut(s) 211, 382, 538, 709
BshFI GGCC 4 cut(s) 181, 258, 429, 585
BsiHKAI GWGCWC 1 cut(s) 507
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 7 cut(s) 167, 338, 386, 491, 542, 665, 713
BsnI GGCC 4 cut(s) 181, 258, 429, 585
Bsp120I GGGCCC 1 cut(s) 179
Bsp1286I GDGCHC 4 cut(s) 183, 354, 507, 681
BspANI GGCC 4 cut(s) 181, 258, 429, 585
BspLI GGNNCC 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 523
Bst2UI CCWGG 4 cut(s) 213, 366, 519, 693
BstACI GRCGYC 1 cut(s) 523
BstC8I GCNNGC 5 cut(s) 59, 76, 256, 427, 583
BstF5I GGATG 1 cut(s) 87
BstNI CCWGG 4 cut(s) 213, 366, 519, 693
BstNSI RCATGY 3 cut(s) 61, 364, 517
BstSCI CCNGG 5 cut(s) 193, 211, 364, 517, 691
BstSFI CTRYAG 3 cut(s) 267, 438, 594
BstSLI GKGCMC 3 cut(s) 183, 354, 681
BstV1I GCAGC 4 cut(s) 211, 382, 538, 709
BsuRI GGCC 4 cut(s) 181, 258, 429, 585
BtsCI GGATG 1 cut(s) 87
Cac8I GCNNGC 5 cut(s) 59, 76, 256, 427, 583
Cfr13I GGNCC 9 cut(s) 170, 179, 180, 197, 341, 368, 494, 668, 695
Csp6I GTAC 1 cut(s) 38
CviAII CATG 7 cut(s) 58, 89, 221, 361, 392, 514, 548
CviJI RGCY 7 cut(s) 74, 181, 193, 258, 429, 585, 691
CviKI_1 RGCY 7 cut(s) 74, 181, 193, 258, 429, 585, 691
CviQI GTAC 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 7 cut(s) 170, 197, 341, 368, 494, 668, 695
EcoRII CCWGG 4 cut(s) 211, 364, 517, 691
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 7 cut(s) 61, 92, 224, 364, 395, 517, 551
FatI CATG 7 cut(s) 57, 88, 220, 360, 391, 513, 547
Fnu4HI GCNGC 4 cut(s) 225, 396, 552, 723
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 4 cut(s) 225, 396, 552, 723
FspBI CTAG 2 cut(s) 384, 540
GluI GCNGC 4 cut(s) 225, 396, 552, 723
HaeIII GGCC 4 cut(s) 181, 258, 429, 585
HapII CCGG 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 523
Hin1II CATG 7 cut(s) 61, 92, 224, 364, 395, 517, 551
HinfI GANTC 8 cut(s) 137, 205, 308, 376, 461, 532, 635, 703
HpaII CCGG 1 cut(s) 195
HphI GGTGA 1 cut(s) 728
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 4 cut(s) 164, 335, 488, 662
Hpy99I CGWCG 6 cut(s) 112, 283, 286, 454, 610, 613
HpyAV CCTTC 4 cut(s) 313, 451, 466, 640
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 5 cut(s) 61, 88, 254, 425, 581
HpySE526I ACGT 1 cut(s) 523
Hsp92I GRCGYC 1 cut(s) 523
Hsp92II CATG 7 cut(s) 61, 92, 224, 364, 395, 517, 551
Lsp1109I GCAGC 4 cut(s) 211, 382, 538, 709
LweI GCATC 1 cut(s) 709
MaeI CTAG 2 cut(s) 384, 540
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 1 cut(s) 25
MboII GAAGA 2 cut(s) 110, 124
MhlI GDGCHC 4 cut(s) 183, 354, 507, 681
MlyI GAGTC 8 cut(s) 146, 199, 317, 370, 470, 526, 644, 697
MmeI TCCRAC 1 cut(s) 551
MnlI CCTC 7 cut(s) 64, 88, 171, 219, 342, 495, 669
MseI TTAA 8 cut(s) 12, 131, 237, 302, 408, 564, 629, 727
MslI CAYNNNNRTG 4 cut(s) 56, 359, 512, 629
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 5 cut(s) 195, 213, 366, 519, 693
MvaI CCWGG 4 cut(s) 213, 366, 519, 693
NciI CCSGG 1 cut(s) 195
NlaIII CATG 7 cut(s) 61, 92, 224, 364, 395, 517, 551
NlaIV GGNNCC 1 cut(s) 181
NspI RCATGY 3 cut(s) 61, 364, 517
PaeI GCATGC 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PkrI GCNGC 4 cut(s) 226, 397, 553, 724
PleI GAGTC 8 cut(s) 145, 199, 316, 370, 469, 526, 643, 697
PpsI GAGTC 8 cut(s) 145, 199, 316, 370, 469, 526, 643, 697
Psp6I CCWGG 4 cut(s) 211, 364, 517, 691
PspGI CCWGG 4 cut(s) 211, 364, 517, 691
PspN4I GGNNCC 1 cut(s) 181
PspOMI GGGCCC 1 cut(s) 179
PspPI GGNCC 9 cut(s) 170, 179, 180, 197, 341, 368, 494, 668, 695
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 4 cut(s) 56, 359, 512, 629
SaqAI TTAA 8 cut(s) 12, 131, 237, 302, 408, 564, 629, 727
SatI GCNGC 4 cut(s) 225, 396, 552, 723
Sau96I GGNCC 9 cut(s) 170, 179, 180, 197, 341, 368, 494, 668, 695
SchI GAGTC 8 cut(s) 146, 199, 317, 370, 470, 526, 644, 697
ScrFI CCNGG 5 cut(s) 195, 213, 366, 519, 693
SduI GDGCHC 4 cut(s) 183, 354, 507, 681
SetI ASST 2 cut(s) 154, 526
SfaNI GCATC 1 cut(s) 709
SfcI CTRYAG 3 cut(s) 267, 438, 594
SinI GGWCC 7 cut(s) 170, 197, 341, 368, 494, 668, 695
SmiMI CAYNNNNRTG 4 cut(s) 56, 359, 512, 629
SpeI ACTAGT 2 cut(s) 383, 539
SphI GCATGC 1 cut(s) 61
SspMI CTAG 2 cut(s) 384, 540
StyD4I CCNGG 5 cut(s) 193, 211, 364, 517, 691
TaiI ACGT 1 cut(s) 526
TaqI TCGA 8 cut(s) 107, 140, 278, 311, 449, 464, 605, 638
TatI WGTACW 1 cut(s) 37
Tru1I TTAA 8 cut(s) 12, 131, 237, 302, 408, 564, 629, 727
Tru9I TTAA 8 cut(s) 12, 131, 237, 302, 408, 564, 629, 727
TseI GCWGC 4 cut(s) 224, 395, 551, 722
TspDTI ATGAA 4 cut(s) 40, 209, 470, 613
VpaK11BI GGWCC 7 cut(s) 170, 197, 341, 368, 494, 668, 695
XceI RCATGY 3 cut(s) 61, 364, 517
XspI CTAG 2 cut(s) 384, 540
ZraI GACGTC 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.