Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Reverse (-)

51461922 .. 51462644

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG313900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGTGTTCTTAATGTTATCGGAGTTACAGCAGTTCTACTGCTATTTTTCGTAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGACGAGGACGAAAACTTGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACCTAATGGTCACACCAACGTGCCTGGTCCTGCGACTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTGCTACAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTTCCCAGGGACCTAATGGTAACACCAACGTGCCTGGTCCTGCGACTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTGCTACAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTTCCCAGGGACCTAATGGTAACACCAACGTGCCTGGTCCTGCGACTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACTTGACGAAGAACAAACTTTTTGTTTTAATGGAGTCGAAGCAGAGGGGTATTCCCCCTTCCGGTGGACCTAATCCGCCCACCAACAAGCCTGGTCATAAGCCTCCTGCTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

25.03

Weight (kDa)

10.41

Isoelectric Point (pI)

28.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	144
AciI	CCGC	1 cut(s)	650
AcyI	GRCGYC	2 cut(s)	292, 460
AgsI	TTSAA	1 cut(s)	702
AhlI	ACTAGT	3 cut(s)	179, 347, 515
AjnI	CCWGG	6 cut(s)	160, 300, 328, 468, 496, 664
AleI	CACNNNNGTG	3 cut(s)	155, 323, 491
AoxI	GGCC	3 cut(s)	220, 388, 556
ApeKI	GCWGC	4 cut(s)	191, 359, 527, 695
AspS9I	GGNCC	7 cut(s)	137, 164, 305, 332, 473, 500, 641
AsuC2I	CCSGG	1 cut(s)	132
AvaII	GGWCC	7 cut(s)	137, 164, 305, 332, 473, 500, 641
BarI	GAAGNNNNNNTAC	2 cut(s)	616, 648
BbvI	GCAGC	4 cut(s)	178, 346, 514, 682
BciT130I	CCWGG	6 cut(s)	162, 302, 330, 470, 498, 666
BcnI	CCSGG	1 cut(s)	132
BcuI	ACTAGT	3 cut(s)	179, 347, 515
BfaI	CTAG	4 cut(s)	180, 348, 516, 684
BfmI	CTRYAG	3 cut(s)	231, 399, 567
BisI	GCNGC	4 cut(s)	192, 360, 528, 696
BlsI	GCNGC	4 cut(s)	193, 361, 529, 697
Bme1390I	CCNGG	7 cut(s)	132, 162, 302, 330, 470, 498, 666
Bme18I	GGWCC	7 cut(s)	137, 164, 305, 332, 473, 500, 641
BmgT120I	GGNCC	7 cut(s)	137, 164, 305, 332, 473, 500, 641
BmiI	GGNNCC	2 cut(s)	306, 474
BmrFI	CCNGG	7 cut(s)	132, 162, 302, 330, 470, 498, 666
BpuMI	CCSGG	1 cut(s)	132
BsaHI	GRCGYC	2 cut(s)	292, 460
BsaJI	CCNNGG	4 cut(s)	300, 301, 468, 469
BsaWI	WCCGGW	1 cut(s)	635
BseBI	CCWGG	6 cut(s)	162, 302, 330, 470, 498, 666
BseDI	CCNNGG	4 cut(s)	300, 301, 468, 469
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	4 cut(s)	178, 346, 514, 682
BshFI	GGCC	3 cut(s)	222, 390, 558
BsiSI	CCGG	2 cut(s)	132, 636
BslFI	GGGAC	2 cut(s)	318, 486
BsmFI	GGGAC	2 cut(s)	318, 486
BsnI	GGCC	3 cut(s)	222, 390, 558
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	3 cut(s)	222, 390, 558
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	306, 474
BssECI	CCNNGG	4 cut(s)	300, 301, 468, 469
BssNI	GRCGYC	2 cut(s)	292, 460
Bst2UI	CCWGG	6 cut(s)	162, 302, 330, 470, 498, 666
Bst4CI	ACNGT	1 cut(s)	568
BstACI	GRCGYC	2 cut(s)	292, 460
BstC8I	GCNNGC	5 cut(s)	59, 76, 220, 388, 556
BstDEI	CTNAG	1 cut(s)	69
BstNI	CCWGG	6 cut(s)	162, 302, 330, 470, 498, 666
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	7 cut(s)	130, 160, 300, 328, 468, 496, 664
BstSFI	CTRYAG	3 cut(s)	231, 399, 567
BstV1I	GCAGC	4 cut(s)	178, 346, 514, 682
BsuRI	GGCC	3 cut(s)	222, 390, 558
BtsI	GCAGTG	2 cut(s)	225, 393
BtsIMutI	CAGTG	3 cut(s)	225, 393, 564
Cac8I	GCNNGC	5 cut(s)	59, 76, 220, 388, 556
Cfr13I	GGNCC	7 cut(s)	137, 164, 305, 332, 473, 500, 641
CseI	GACGC	2 cut(s)	300, 468
CviAII	CATG	6 cut(s)	58, 89, 188, 356, 524, 692
CviJI	RGCY	7 cut(s)	74, 119, 222, 390, 558, 664, 676
CviKI_1	RGCY	7 cut(s)	74, 119, 222, 390, 558, 664, 676
DdeI	CTNAG	1 cut(s)	69
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	639
Eco47I	GGWCC	7 cut(s)	137, 164, 305, 332, 473, 500, 641
EcoO109I	RGGNCCY	2 cut(s)	305, 473
EcoRII	CCWGG	6 cut(s)	160, 300, 328, 468, 496, 664
FaeI	CATG	6 cut(s)	61, 92, 191, 359, 527, 695
FaiI	YATR	7 cut(s)	59, 90, 189, 357, 525, 672, 693
FaqI	GGGAC	2 cut(s)	318, 486
FatI	CATG	6 cut(s)	57, 88, 187, 355, 523, 691
Fnu4HI	GCNGC	4 cut(s)	192, 360, 528, 696
Fsp4HI	GCNGC	4 cut(s)	192, 360, 528, 696
FspBI	CTAG	4 cut(s)	180, 348, 516, 684
GluI	GCNGC	4 cut(s)	192, 360, 528, 696
HaeIII	GGCC	3 cut(s)	222, 390, 558
HapII	CCGG	2 cut(s)	132, 636
HgaI	GACGC	2 cut(s)	300, 468
Hin1I	GRCGYC	2 cut(s)	292, 460
Hin1II	CATG	6 cut(s)	61, 92, 191, 359, 527, 695
HinfI	GANTC	6 cut(s)	172, 272, 340, 440, 508, 608
HpaII	CCGG	2 cut(s)	132, 636
Hpy166II	GTNNAC	4 cut(s)	137, 290, 458, 641
Hpy188I	TCNGA	2 cut(s)	23, 70
Hpy8I	GTNNAC	4 cut(s)	137, 290, 458, 641
HpyAV	CCTTC	4 cut(s)	109, 306, 474, 642
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	3 cut(s)	156, 324, 492
HpyCH4V	TGCA	8 cut(s)	61, 88, 194, 218, 362, 386, 530, 554
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	3 cut(s)	156, 324, 492
Hsp92I	GRCGYC	2 cut(s)	292, 460
Hsp92II	CATG	6 cut(s)	61, 92, 191, 359, 527, 695
Lsp1109I	GCAGC	4 cut(s)	178, 346, 514, 682
MaeI	CTAG	4 cut(s)	180, 348, 516, 684
MaeII	ACGT	3 cut(s)	156, 324, 492
MaeIII	GTNAC	4 cut(s)	25, 146, 314, 482
MboII	GAAGA	5 cut(s)	116, 124, 259, 427, 595
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	2 cut(s)	62, 718
MlyI	GAGTC	6 cut(s)	166, 281, 334, 449, 502, 617
MnlI	CCTC	5 cut(s)	64, 88, 138, 612, 687
MseI	TTAA	9 cut(s)	12, 201, 266, 369, 434, 537, 602, 708, 721
MslI	CAYNNNNRTG	3 cut(s)	155, 323, 491
MspI	CCGG	2 cut(s)	132, 636
MspR9I	CCNGG	7 cut(s)	132, 162, 302, 330, 470, 498, 666
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	6 cut(s)	162, 302, 330, 470, 498, 666
NciI	CCSGG	1 cut(s)	132
NlaIII	CATG	6 cut(s)	61, 92, 191, 359, 527, 695
NlaIV	GGNNCC	2 cut(s)	306, 474
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	3 cut(s)	155, 323, 491
PaeI	GCATGC	1 cut(s)	61
PasI	CCCWGGG	2 cut(s)	301, 469
PkrI	GCNGC	4 cut(s)	193, 361, 529, 697
PleI	GAGTC	6 cut(s)	166, 280, 334, 448, 502, 616
PpsI	GAGTC	6 cut(s)	166, 280, 334, 448, 502, 616
PpuMI	RGGWCCY	2 cut(s)	305, 473
Psp5II	RGGWCCY	2 cut(s)	305, 473
Psp6I	CCWGG	6 cut(s)	160, 300, 328, 468, 496, 664
PspGI	CCWGG	6 cut(s)	160, 300, 328, 468, 496, 664
PspN4I	GGNNCC	2 cut(s)	306, 474
PspPI	GGNCC	7 cut(s)	137, 164, 305, 332, 473, 500, 641
PspPPI	RGGWCCY	2 cut(s)	305, 473
RseI	CAYNNNNRTG	3 cut(s)	155, 323, 491
SaqAI	TTAA	9 cut(s)	12, 201, 266, 369, 434, 537, 602, 708, 721
SatI	GCNGC	4 cut(s)	192, 360, 528, 696
Sau96I	GGNCC	7 cut(s)	137, 164, 305, 332, 473, 500, 641
SchI	GAGTC	6 cut(s)	166, 281, 334, 449, 502, 617
ScrFI	CCNGG	7 cut(s)	132, 162, 302, 330, 470, 498, 666
SetI	ASST	9 cut(s)	142, 159, 289, 310, 327, 457, 478, 495, 646
SfcI	CTRYAG	3 cut(s)	231, 399, 567
SinI	GGWCC	7 cut(s)	137, 164, 305, 332, 473, 500, 641
SmiMI	CAYNNNNRTG	3 cut(s)	155, 323, 491
SpeI	ACTAGT	3 cut(s)	179, 347, 515
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	2 cut(s)	62, 718
SsiI	CCGC	1 cut(s)	650
SspMI	CTAG	4 cut(s)	180, 348, 516, 684
StyD4I	CCNGG	7 cut(s)	130, 160, 300, 328, 468, 496, 664
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	3 cut(s)	159, 327, 495
TaqI	TCGA	3 cut(s)	275, 443, 611
TasI	AATT	2 cut(s)	62, 718
Tru1I	TTAA	9 cut(s)	12, 201, 266, 369, 434, 537, 602, 708, 721
Tru9I	TTAA	9 cut(s)	12, 201, 266, 369, 434, 537, 602, 708, 721
TscAI	CASTG	3 cut(s)	232, 400, 571
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	4 cut(s)	191, 359, 527, 695
Tsp45I	GTSAC	1 cut(s)	146
TspRI	CASTG	3 cut(s)	232, 400, 571
VpaK11BI	GGWCC	7 cut(s)	137, 164, 305, 332, 473, 500, 641
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	2 cut(s)	308, 476
XspI	CTAG	4 cut(s)	180, 348, 516, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.