No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g22100 FvH4_2g22120 |
| pyrus_communis | pycom11g21110 |
| rosa_laevigata | RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934 |
| rosa_multiflora | Rmu_ssc0000422.1_g000045 |
| rosa_roxburghii | Rroxscaffold_7G00177800 |
| rosa_rugosa | Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100 |
| rosa_samantha | Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 214 |
| AcsI | RAATTY | 1 cut(s) | 46 |
| AcyI | GRCGYC | 1 cut(s) | 211 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 110, 161, 179, 230, 353, 401 |
| AgsI | TTSAA | 1 cut(s) | 246 |
| AhlI | ACTAGT | 1 cut(s) | 227 |
| AjnI | CCWGG | 4 cut(s) | 136, 154, 205, 379 |
| AoxI | GGCC | 4 cut(s) | 112, 122, 271, 355 |
| ApaI | GGGCCC | 1 cut(s) | 126 |
| ApeKI | GCWGC | 2 cut(s) | 239, 410 |
| ApoI | RAATTY | 1 cut(s) | 46 |
| AspS9I | GGNCC | 7 cut(s) | 113, 122, 123, 140, 182, 356, 383 |
| AvaII | GGWCC | 3 cut(s) | 140, 182, 383 |
| BaeGI | GKGCMC | 2 cut(s) | 126, 195 |
| BanII | GRGCYC | 1 cut(s) | 126 |
| BbvI | GCAGC | 2 cut(s) | 226, 397 |
| BccI | CCATC | 4 cut(s) | 104, 173, 182, 347 |
| BciT130I | CCWGG | 4 cut(s) | 138, 156, 207, 381 |
| BcuI | ACTAGT | 1 cut(s) | 227 |
| BfaI | CTAG | 1 cut(s) | 228 |
| BfmI | CTRYAG | 1 cut(s) | 282 |
| BisI | GCNGC | 2 cut(s) | 240, 411 |
| BlsI | GCNGC | 2 cut(s) | 241, 412 |
| Bme1390I | CCNGG | 4 cut(s) | 138, 156, 207, 381 |
| Bme18I | GGWCC | 3 cut(s) | 140, 182, 383 |
| BmgT120I | GGNCC | 7 cut(s) | 113, 122, 123, 140, 182, 356, 383 |
| BmiI | GGNNCC | 1 cut(s) | 124 |
| BmrFI | CCNGG | 4 cut(s) | 138, 156, 207, 381 |
| BsaHI | GRCGYC | 1 cut(s) | 211 |
| BsaJI | CCNNGG | 1 cut(s) | 12 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 136, 166 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 110, 161, 179, 230, 353, 401 |
| BseBI | CCWGG | 4 cut(s) | 138, 156, 207, 381 |
| BseDI | CCNNGG | 1 cut(s) | 12 |
| BseGI | GGATG | 1 cut(s) | 30 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 110, 161, 179, 230, 353, 401 |
| BseRI | GAGGAG | 1 cut(s) | 141 |
| BseSI | GKGCMC | 2 cut(s) | 126, 195 |
| BseXI | GCAGC | 2 cut(s) | 226, 397 |
| BshFI | GGCC | 4 cut(s) | 114, 124, 273, 357 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 110, 161, 179, 230, 353, 401 |
| BsnI | GGCC | 4 cut(s) | 114, 124, 273, 357 |
| Bsp120I | GGGCCC | 1 cut(s) | 122 |
| Bsp1286I | GDGCHC | 2 cut(s) | 126, 195 |
| BspANI | GGCC | 4 cut(s) | 114, 124, 273, 357 |
| BspLI | GGNNCC | 1 cut(s) | 124 |
| BssECI | CCNNGG | 1 cut(s) | 12 |
| BssNI | GRCGYC | 1 cut(s) | 211 |
| Bst2UI | CCWGG | 4 cut(s) | 138, 156, 207, 381 |
| BstACI | GRCGYC | 1 cut(s) | 211 |
| BstC8I | GCNNGC | 2 cut(s) | 19, 271 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 159 |
| BstF5I | GGATG | 1 cut(s) | 30 |
| BstNI | CCWGG | 4 cut(s) | 138, 156, 207, 381 |
| BstNSI | RCATGY | 1 cut(s) | 205 |
| BstSCI | CCNGG | 4 cut(s) | 136, 154, 205, 379 |
| BstSFI | CTRYAG | 1 cut(s) | 282 |
| BstSLI | GKGCMC | 2 cut(s) | 126, 195 |
| BstV1I | GCAGC | 2 cut(s) | 226, 397 |
| BsuRI | GGCC | 4 cut(s) | 114, 124, 273, 357 |
| BtsCI | GGATG | 1 cut(s) | 30 |
| Cac8I | GCNNGC | 2 cut(s) | 19, 271 |
| Cfr13I | GGNCC | 7 cut(s) | 113, 122, 123, 140, 182, 356, 383 |
| CviAII | CATG | 3 cut(s) | 32, 202, 236 |
| CviJI | RGCY | 7 cut(s) | 17, 114, 124, 136, 273, 357, 379 |
| CviKI_1 | RGCY | 7 cut(s) | 17, 114, 124, 136, 273, 357, 379 |
| Eco24I | GRGCYC | 1 cut(s) | 126 |
| Eco47I | GGWCC | 3 cut(s) | 140, 182, 383 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 159 |
| EcoRII | CCWGG | 4 cut(s) | 136, 154, 205, 379 |
| EcoT38I | GRGCYC | 1 cut(s) | 126 |
| FaeI | CATG | 3 cut(s) | 35, 205, 239 |
| FaiI | YATR | 4 cut(s) | 33, 203, 237, 284 |
| FatI | CATG | 3 cut(s) | 31, 201, 235 |
| Fnu4HI | GCNGC | 2 cut(s) | 240, 411 |
| FokI | GGATG | 1 cut(s) | 37 |
| FriOI | GRGCYC | 1 cut(s) | 126 |
| Fsp4HI | GCNGC | 2 cut(s) | 240, 411 |
| FspBI | CTAG | 1 cut(s) | 228 |
| GluI | GCNGC | 2 cut(s) | 240, 411 |
| HaeIII | GGCC | 4 cut(s) | 114, 124, 273, 357 |
| Hin1I | GRCGYC | 1 cut(s) | 211 |
| Hin1II | CATG | 3 cut(s) | 35, 205, 239 |
| HinfI | GANTC | 5 cut(s) | 80, 148, 220, 323, 391 |
| Hpy188I | TCNGA | 1 cut(s) | 13 |
| Hpy188III | TCNNGA | 4 cut(s) | 107, 176, 185, 350 |
| Hpy99I | CGWCG | 3 cut(s) | 55, 298, 301 |
| HpyAV | CCTTC | 1 cut(s) | 328 |
| HpyCH4IV | ACGT | 1 cut(s) | 211 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 31, 269 |
| HpySE526I | ACGT | 1 cut(s) | 211 |
| Hsp92I | GRCGYC | 1 cut(s) | 211 |
| Hsp92II | CATG | 3 cut(s) | 35, 205, 239 |
| Lsp1109I | GCAGC | 2 cut(s) | 226, 397 |
| MaeI | CTAG | 1 cut(s) | 228 |
| MaeII | ACGT | 1 cut(s) | 211 |
| MboII | GAAGA | 2 cut(s) | 53, 67 |
| MhlI | GDGCHC | 2 cut(s) | 126, 195 |
| MluCI | AATT | 1 cut(s) | 46 |
| MlyI | GAGTC | 5 cut(s) | 89, 142, 214, 332, 385 |
| MnlI | CCTC | 6 cut(s) | 7, 31, 114, 162, 183, 357 |
| MseI | TTAA | 4 cut(s) | 74, 252, 317, 415 |
| MslI | CAYNNNNRTG | 1 cut(s) | 200 |
| MspR9I | CCNGG | 4 cut(s) | 138, 156, 207, 381 |
| MvaI | CCWGG | 4 cut(s) | 138, 156, 207, 381 |
| NlaIII | CATG | 3 cut(s) | 35, 205, 239 |
| NlaIV | GGNNCC | 1 cut(s) | 124 |
| NspI | RCATGY | 1 cut(s) | 205 |
| PkrI | GCNGC | 2 cut(s) | 241, 412 |
| PleI | GAGTC | 5 cut(s) | 88, 142, 214, 331, 385 |
| PpsI | GAGTC | 5 cut(s) | 88, 142, 214, 331, 385 |
| Psp6I | CCWGG | 4 cut(s) | 136, 154, 205, 379 |
| PspGI | CCWGG | 4 cut(s) | 136, 154, 205, 379 |
| PspN4I | GGNNCC | 1 cut(s) | 124 |
| PspOMI | GGGCCC | 1 cut(s) | 122 |
| PspPI | GGNCC | 7 cut(s) | 113, 122, 123, 140, 182, 356, 383 |
| RseI | CAYNNNNRTG | 1 cut(s) | 200 |
| SaqAI | TTAA | 4 cut(s) | 74, 252, 317, 415 |
| SatI | GCNGC | 2 cut(s) | 240, 411 |
| Sau96I | GGNCC | 7 cut(s) | 113, 122, 123, 140, 182, 356, 383 |
| SchI | GAGTC | 5 cut(s) | 89, 142, 214, 332, 385 |
| ScrFI | CCNGG | 4 cut(s) | 138, 156, 207, 381 |
| SduI | GDGCHC | 2 cut(s) | 126, 195 |
| SetI | ASST | 3 cut(s) | 97, 166, 214 |
| SfcI | CTRYAG | 1 cut(s) | 282 |
| SinI | GGWCC | 3 cut(s) | 140, 182, 383 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 200 |
| SpeI | ACTAGT | 1 cut(s) | 227 |
| Sse9I | AATT | 1 cut(s) | 46 |
| SspMI | CTAG | 1 cut(s) | 228 |
| StyD4I | CCNGG | 4 cut(s) | 136, 154, 205, 379 |
| TaiI | ACGT | 1 cut(s) | 214 |
| TaqI | TCGA | 4 cut(s) | 50, 83, 293, 326 |
| TasI | AATT | 1 cut(s) | 46 |
| Tru1I | TTAA | 4 cut(s) | 74, 252, 317, 415 |
| Tru9I | TTAA | 4 cut(s) | 74, 252, 317, 415 |
| TseI | GCWGC | 2 cut(s) | 239, 410 |
| VpaK11BI | GGWCC | 3 cut(s) | 140, 182, 383 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 159 |
| XapI | RAATTY | 1 cut(s) | 46 |
| XceI | RCATGY | 1 cut(s) | 205 |
| XspI | CTAG | 1 cut(s) | 228 |
| ZraI | GACGTC | 1 cut(s) | 212 |