Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Forward (+)

17338113 .. 17338826

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGTGTTCTTAATGTTATCGGAGTTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGACGAGGATGAAAACTCGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACATAATGGTCACACCAACGTGCCCGGTCCTGCGACTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTATAGAAAACTCGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTCCCCAGGGACCTAATCCTCCCACCAACGTGCCTGGTCCTAAGCCTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACCTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGAAGCCCTCCTCAGGGACATAATCCTCCCACCAACGTGCCTGGTCCTAAGCCTCCTACTAGTAGTTATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAGGGTATTCCCCCTCCCGGTGGACCTAATCCGCCCACCAACACGCCTGGTCATAAGCCTCCTGCTAGTGGTCATGCTACTTCAACCATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

24.89

Weight (kDa)

10.09

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	144
AciI	CCGC	1 cut(s)	650
AcyI	GRCGYC	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	702
AhlI	ACTAGT	3 cut(s)	179, 347, 515
AjnI	CCWGG	4 cut(s)	300, 328, 496, 664
AleI	CACNNNNGTG	3 cut(s)	155, 323, 491
AoxI	GGCC	3 cut(s)	220, 388, 556
ApeKI	GCWGC	3 cut(s)	191, 359, 527
AspS9I	GGNCC	5 cut(s)	164, 305, 332, 500, 641
AsuC2I	CCSGG	3 cut(s)	132, 162, 636
AvaII	GGWCC	5 cut(s)	164, 305, 332, 500, 641
AxyI	CCTNAGG	1 cut(s)	468
BaeGI	GKGCMC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	178, 346, 514
BciT130I	CCWGG	4 cut(s)	302, 330, 498, 666
BcnI	CCSGG	3 cut(s)	132, 162, 636
BcuI	ACTAGT	3 cut(s)	179, 347, 515
BfaI	CTAG	4 cut(s)	180, 348, 516, 684
BfmI	CTRYAG	3 cut(s)	231, 399, 567
BisI	GCNGC	3 cut(s)	192, 360, 528
BlsI	GCNGC	3 cut(s)	193, 361, 529
Bme1390I	CCNGG	7 cut(s)	132, 162, 302, 330, 498, 636, 666
Bme18I	GGWCC	5 cut(s)	164, 305, 332, 500, 641
BmgT120I	GGNCC	5 cut(s)	164, 305, 332, 500, 641
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	7 cut(s)	132, 162, 302, 330, 498, 636, 666
Bpu10I	CCTNAGC	2 cut(s)	336, 504
BpuMI	CCSGG	3 cut(s)	132, 162, 636
BsaHI	GRCGYC	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	300, 301
Bse21I	CCTNAGG	1 cut(s)	468
BseBI	CCWGG	4 cut(s)	302, 330, 498, 666
BseDI	CCNNGG	2 cut(s)	300, 301
BseGI	GGATG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	60, 482
BseRI	GAGGAG	1 cut(s)	456
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	178, 346, 514
BshFI	GGCC	3 cut(s)	222, 390, 558
BsiSI	CCGG	3 cut(s)	132, 162, 636
BslFI	GGGAC	2 cut(s)	318, 486
BsmFI	GGGAC	2 cut(s)	318, 486
BsnI	GGCC	3 cut(s)	222, 390, 558
Bsp1286I	GDGCHC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	3 cut(s)	222, 390, 558
BspCNI	CTCAG	2 cut(s)	61, 481
BspLI	GGNNCC	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	300, 301
BssNI	GRCGYC	1 cut(s)	292
Bst2UI	CCWGG	4 cut(s)	302, 330, 498, 666
Bst4CI	ACNGT	2 cut(s)	400, 568
BstACI	GRCGYC	1 cut(s)	292
BstC8I	GCNNGC	5 cut(s)	59, 76, 220, 388, 556
BstDEI	CTNAG	4 cut(s)	69, 336, 468, 504
BstF5I	GGATG	1 cut(s)	103
BstNI	CCWGG	4 cut(s)	302, 330, 498, 666
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	7 cut(s)	130, 160, 300, 328, 496, 634, 664
BstSFI	CTRYAG	3 cut(s)	231, 399, 567
BstSLI	GKGCMC	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	178, 346, 514
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	3 cut(s)	222, 390, 558
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	396, 564
Cac8I	GCNNGC	5 cut(s)	59, 76, 220, 388, 556
Cfr13I	GGNCC	5 cut(s)	164, 305, 332, 500, 641
CseI	GACGC	1 cut(s)	300
CviAII	CATG	5 cut(s)	58, 89, 188, 356, 692
CviJI	RGCY	9 cut(s)	74, 119, 222, 340, 390, 462, 508, 558, 676
CviKI_1	RGCY	9 cut(s)	74, 119, 222, 340, 390, 462, 508, 558, 676
DdeI	CTNAG	4 cut(s)	69, 336, 468, 504
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	639
Eco47I	GGWCC	5 cut(s)	164, 305, 332, 500, 641
Eco81I	CCTNAGG	1 cut(s)	468
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	4 cut(s)	300, 328, 496, 664
FaeI	CATG	5 cut(s)	61, 92, 191, 359, 695
FaqI	GGGAC	2 cut(s)	318, 486
FatI	CATG	5 cut(s)	57, 88, 187, 355, 691
Fnu4HI	GCNGC	3 cut(s)	192, 360, 528
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	3 cut(s)	192, 360, 528
FspBI	CTAG	4 cut(s)	180, 348, 516, 684
GluI	GCNGC	3 cut(s)	192, 360, 528
HaeIII	GGCC	3 cut(s)	222, 390, 558
HapII	CCGG	3 cut(s)	132, 162, 636
HgaI	GACGC	1 cut(s)	300
Hin1I	GRCGYC	1 cut(s)	292
Hin1II	CATG	5 cut(s)	61, 92, 191, 359, 695
HinfI	GANTC	4 cut(s)	172, 272, 440, 608
HpaII	CCGG	3 cut(s)	132, 162, 636
Hpy166II	GTNNAC	3 cut(s)	137, 290, 641
Hpy188I	TCNGA	2 cut(s)	23, 70
Hpy8I	GTNNAC	3 cut(s)	137, 290, 641
Hpy99I	CGWCG	2 cut(s)	112, 247
HpyAV	CCTTC	2 cut(s)	109, 613
HpyCH4III	ACNGT	2 cut(s)	400, 568
HpyCH4IV	ACGT	3 cut(s)	156, 324, 492
HpyCH4V	TGCA	8 cut(s)	61, 88, 194, 218, 362, 386, 530, 554
HpyF3I	CTNAG	4 cut(s)	69, 336, 468, 504
HpySE526I	ACGT	3 cut(s)	156, 324, 492
Hsp92I	GRCGYC	1 cut(s)	292
Hsp92II	CATG	5 cut(s)	61, 92, 191, 359, 695
Lsp1109I	GCAGC	3 cut(s)	178, 346, 514
MaeI	CTAG	4 cut(s)	180, 348, 516, 684
MaeII	ACGT	3 cut(s)	156, 324, 492
MaeIII	GTNAC	2 cut(s)	25, 146
MboII	GAAGA	5 cut(s)	116, 124, 259, 427, 595
MfeI	CAATTG	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	1 cut(s)	62
MlyI	GAGTC	4 cut(s)	166, 281, 449, 617
MseI	TTAA	8 cut(s)	12, 201, 266, 369, 434, 537, 602, 708
MslI	CAYNNNNRTG	4 cut(s)	56, 155, 323, 491
MspI	CCGG	3 cut(s)	132, 162, 636
MspR9I	CCNGG	7 cut(s)	132, 162, 302, 330, 498, 636, 666
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	4 cut(s)	302, 330, 498, 666
NciI	CCSGG	3 cut(s)	132, 162, 636
NlaIII	CATG	5 cut(s)	61, 92, 191, 359, 695
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	3 cut(s)	155, 323, 491
PaeI	GCATGC	1 cut(s)	61
PasI	CCCWGGG	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	193, 361, 529
PleI	GAGTC	4 cut(s)	166, 280, 448, 616
PpsI	GAGTC	4 cut(s)	166, 280, 448, 616
PpuMI	RGGWCCY	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	4 cut(s)	300, 328, 496, 664
PspGI	CCWGG	4 cut(s)	300, 328, 496, 664
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	5 cut(s)	164, 305, 332, 500, 641
PspPPI	RGGWCCY	1 cut(s)	305
RseI	CAYNNNNRTG	4 cut(s)	56, 155, 323, 491
SaqAI	TTAA	8 cut(s)	12, 201, 266, 369, 434, 537, 602, 708
SatI	GCNGC	3 cut(s)	192, 360, 528
Sau96I	GGNCC	5 cut(s)	164, 305, 332, 500, 641
SchI	GAGTC	4 cut(s)	166, 281, 449, 617
ScrFI	CCNGG	7 cut(s)	132, 162, 302, 330, 498, 636, 666
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	8 cut(s)	159, 289, 310, 327, 411, 457, 495, 646
SfcI	CTRYAG	3 cut(s)	231, 399, 567
SinI	GGWCC	5 cut(s)	164, 305, 332, 500, 641
SmiMI	CAYNNNNRTG	4 cut(s)	56, 155, 323, 491
SpeI	ACTAGT	3 cut(s)	179, 347, 515
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	1 cut(s)	650
SspMI	CTAG	4 cut(s)	180, 348, 516, 684
StyD4I	CCNGG	7 cut(s)	130, 160, 300, 328, 496, 634, 664
TaaI	ACNGT	2 cut(s)	400, 568
TaiI	ACGT	3 cut(s)	159, 327, 495
TaqI	TCGA	5 cut(s)	107, 242, 275, 443, 611
TasI	AATT	1 cut(s)	62
Tru1I	TTAA	8 cut(s)	12, 201, 266, 369, 434, 537, 602, 708
Tru9I	TTAA	8 cut(s)	12, 201, 266, 369, 434, 537, 602, 708
TscAI	CASTG	2 cut(s)	403, 571
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	3 cut(s)	191, 359, 527
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	40, 114
TspRI	CASTG	2 cut(s)	403, 571
VpaK11BI	GGWCC	5 cut(s)	164, 305, 332, 500, 641
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	4 cut(s)	180, 348, 516, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.