Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Forward (+)

16906389 .. 16907473

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG189700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGTGTTCTTAATGTTATCGGAGTTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGACGAGGACGAAAACTTGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACCTAATCCTACCACCAACGTGCCTGGTCCTGCGACTCCTACTAGCGGTCATACTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTACAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGTCAGCCTCCCCAGGGACCTAATCCTCCCACCAACGTGCCTGGTCCTGCGACAACTTCTAGCGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTACAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGATCCCCGTTCCGGTGGACATAATCCGACCACCACCACGCCTGGTCCTAAGCCTCTTGCTAGTGGTCGTGCTGTTTCAACCATTAACCAAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

19.34

Weight (kDa)

10.07

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	183, 351
AclWI	GGATC	1 cut(s)	452
AfiI	CCNNNNNNNGG	4 cut(s)	134, 182, 302, 467
AgsI	TTSAA	1 cut(s)	534
AjnI	CCWGG	4 cut(s)	160, 300, 328, 496
AleI	CACNNNNGTG	2 cut(s)	155, 323
AlwI	GGATC	1 cut(s)	452
AoxI	GGCC	2 cut(s)	220, 388
ApeKI	GCWGC	1 cut(s)	359
AspS9I	GGNCC	5 cut(s)	137, 164, 305, 332, 500
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	5 cut(s)	137, 164, 305, 332, 500
BbvI	GCAGC	1 cut(s)	346
BciT130I	CCWGG	4 cut(s)	162, 302, 330, 498
BcnI	CCSGG	1 cut(s)	132
BfaI	CTAG	3 cut(s)	180, 348, 516
BfmI	CTRYAG	2 cut(s)	231, 399
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	5 cut(s)	132, 162, 302, 330, 498
Bme18I	GGWCC	5 cut(s)	137, 164, 305, 332, 500
BmgT120I	GGNCC	5 cut(s)	137, 164, 305, 332, 500
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	5 cut(s)	132, 162, 302, 330, 498
Bpu10I	CCTNAGC	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	300, 301
BsaWI	WCCGGW	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 182, 302, 467
BseBI	CCWGG	4 cut(s)	162, 302, 330, 498
BseDI	CCNNGG	2 cut(s)	300, 301
BseLI	CCNNNNNNNGG	4 cut(s)	134, 182, 302, 467
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	2 cut(s)	222, 390
BsiSI	CCGG	2 cut(s)	132, 468
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	4 cut(s)	134, 182, 302, 467
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	222, 390
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	2 cut(s)	183, 351
BspANI	GGCC	2 cut(s)	222, 390
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	300, 301
BssMI	GATC	1 cut(s)	457
Bst2UI	CCWGG	4 cut(s)	162, 302, 330, 498
BstC8I	GCNNGC	4 cut(s)	59, 76, 220, 388
BstDEI	CTNAG	2 cut(s)	69, 504
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstNI	CCWGG	4 cut(s)	162, 302, 330, 498
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	5 cut(s)	130, 160, 300, 328, 496
BstSFI	CTRYAG	2 cut(s)	231, 399
BstV1I	GCAGC	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	222, 390
Cac8I	GCNNGC	4 cut(s)	59, 76, 220, 388
Cfr13I	GGNCC	5 cut(s)	137, 164, 305, 332, 500
CviAII	CATG	3 cut(s)	58, 89, 356
CviJI	RGCY	6 cut(s)	74, 119, 222, 295, 390, 508
CviKI_1	RGCY	6 cut(s)	74, 119, 222, 295, 390, 508
DdeI	CTNAG	2 cut(s)	69, 504
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
Eco47I	GGWCC	5 cut(s)	137, 164, 305, 332, 500
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	4 cut(s)	160, 300, 328, 496
FaeI	CATG	3 cut(s)	61, 92, 359
FaiI	YATR	6 cut(s)	53, 59, 90, 189, 357, 477
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	3 cut(s)	57, 88, 355
Fnu4HI	GCNGC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	3 cut(s)	180, 348, 516
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	222, 390
HapII	CCGG	2 cut(s)	132, 468
Hin1II	CATG	3 cut(s)	61, 92, 359
HinfI	GANTC	3 cut(s)	172, 272, 440
HpaII	CCGG	2 cut(s)	132, 468
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	137, 473
Hpy188I	TCNGA	3 cut(s)	23, 70, 483
Hpy8I	GTNNAC	2 cut(s)	137, 473
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	156, 324
HpyCH4V	TGCA	6 cut(s)	61, 88, 194, 218, 362, 386
HpyF3I	CTNAG	2 cut(s)	69, 504
HpySE526I	ACGT	2 cut(s)	156, 324
Hsp92II	CATG	3 cut(s)	61, 92, 359
Kzo9I	GATC	1 cut(s)	457
Lsp1109I	GCAGC	1 cut(s)	346
MaeI	CTAG	3 cut(s)	180, 348, 516
MaeII	ACGT	2 cut(s)	156, 324
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	4 cut(s)	116, 124, 259, 427
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	2 cut(s)	62, 550
MlyI	GAGTC	3 cut(s)	166, 281, 449
MmeI	TCCRAC	1 cut(s)	506
MnlI	CCTC	6 cut(s)	64, 88, 138, 306, 324, 519
MseI	TTAA	7 cut(s)	12, 201, 266, 369, 434, 540, 553
MslI	CAYNNNNRTG	3 cut(s)	56, 155, 323
MspI	CCGG	2 cut(s)	132, 468
MspR9I	CCNGG	5 cut(s)	132, 162, 302, 330, 498
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	4 cut(s)	162, 302, 330, 498
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	61, 92, 359
NlaIV	GGNNCC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	2 cut(s)	155, 323
PaeI	GCATGC	1 cut(s)	61
PasI	CCCWGGG	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	3 cut(s)	166, 280, 448
PpsI	GAGTC	3 cut(s)	166, 280, 448
PpuMI	RGGWCCY	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	4 cut(s)	160, 300, 328, 496
PspGI	CCWGG	4 cut(s)	160, 300, 328, 496
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	5 cut(s)	137, 164, 305, 332, 500
PspPPI	RGGWCCY	1 cut(s)	305
RseI	CAYNNNNRTG	3 cut(s)	56, 155, 323
SaqAI	TTAA	7 cut(s)	12, 201, 266, 369, 434, 540, 553
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	5 cut(s)	137, 164, 305, 332, 500
SchI	GAGTC	3 cut(s)	166, 281, 449
ScrFI	CCNGG	5 cut(s)	132, 162, 302, 330, 498
SetI	ASST	6 cut(s)	142, 159, 289, 310, 327, 457
SfcI	CTRYAG	2 cut(s)	231, 399
SinI	GGWCC	5 cut(s)	137, 164, 305, 332, 500
SmiMI	CAYNNNNRTG	3 cut(s)	56, 155, 323
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	2 cut(s)	62, 550
SsiI	CCGC	2 cut(s)	183, 351
SspMI	CTAG	3 cut(s)	180, 348, 516
StyD4I	CCNGG	5 cut(s)	130, 160, 300, 328, 496
TaiI	ACGT	2 cut(s)	159, 327
TaqI	TCGA	2 cut(s)	275, 443
TasI	AATT	2 cut(s)	62, 550
Tru1I	TTAA	7 cut(s)	12, 201, 266, 369, 434, 540, 553
Tru9I	TTAA	7 cut(s)	12, 201, 266, 369, 434, 540, 553
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	40
VpaK11BI	GGWCC	5 cut(s)	137, 164, 305, 332, 500
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	3 cut(s)	180, 348, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.