Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Forward (+)

10306640 .. 10307026

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG111800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGTGTTCTTAATGTTATCGGAGCTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGACGAGGACGAAAACTTGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACCTAATCCTACCACCAACGTGCCTGGTCCTGCGACTCCTACTAGCGGTCATACTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTACAGAAAACTTGACGAAGAACAAACATTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGTCAGCCTCCCCAGGGACCTAATCCTCCCACCAACGTGCCTGGTCCTGCGACTCCTACTAGCGGTCATGCTGCTTCAACCATTAACCAAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.36

Weight (kDa)

9.3

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	183, 351
AfiI	CCNNNNNNNGG	4 cut(s)	134, 182, 302, 350
AgsI	TTSAA	1 cut(s)	366
AjnI	CCWGG	3 cut(s)	160, 300, 328
AleI	CACNNNNGTG	2 cut(s)	155, 323
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	359
AspS9I	GGNCC	4 cut(s)	137, 164, 305, 332
AsuC2I	CCSGG	1 cut(s)	132
AvaII	GGWCC	4 cut(s)	137, 164, 305, 332
BbvI	GCAGC	1 cut(s)	346
BciT130I	CCWGG	3 cut(s)	162, 302, 330
BcnI	CCSGG	1 cut(s)	132
BfaI	CTAG	2 cut(s)	180, 348
BfmI	CTRYAG	2 cut(s)	27, 231
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	4 cut(s)	132, 162, 302, 330
Bme18I	GGWCC	4 cut(s)	137, 164, 305, 332
BmgT120I	GGNCC	4 cut(s)	137, 164, 305, 332
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	4 cut(s)	132, 162, 302, 330
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	300, 301
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 182, 302, 350
BseBI	CCWGG	3 cut(s)	162, 302, 330
BseDI	CCNNGG	2 cut(s)	300, 301
BseLI	CCNNNNNNNGG	4 cut(s)	134, 182, 302, 350
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	4 cut(s)	134, 182, 302, 350
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	222
BspACI	CCGC	2 cut(s)	183, 351
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	300, 301
Bst2UI	CCWGG	3 cut(s)	162, 302, 330
BstC8I	GCNNGC	3 cut(s)	59, 76, 220
BstDEI	CTNAG	1 cut(s)	69
BstNI	CCWGG	3 cut(s)	162, 302, 330
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	4 cut(s)	130, 160, 300, 328
BstSFI	CTRYAG	2 cut(s)	27, 231
BstV1I	GCAGC	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	59, 76, 220
Cfr13I	GGNCC	4 cut(s)	137, 164, 305, 332
CviAII	CATG	3 cut(s)	58, 89, 356
CviJI	RGCY	5 cut(s)	26, 74, 119, 222, 295
CviKI_1	RGCY	5 cut(s)	26, 74, 119, 222, 295
DdeI	CTNAG	1 cut(s)	69
Eco47I	GGWCC	4 cut(s)	137, 164, 305, 332
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	3 cut(s)	160, 300, 328
FaeI	CATG	3 cut(s)	61, 92, 359
FaiI	YATR	5 cut(s)	53, 59, 90, 189, 357
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	3 cut(s)	57, 88, 355
Fnu4HI	GCNGC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	2 cut(s)	180, 348
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	3 cut(s)	61, 92, 359
HinfI	GANTC	3 cut(s)	172, 272, 340
HpaII	CCGG	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	23, 70
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	156, 324
HpyCH4V	TGCA	4 cut(s)	61, 88, 194, 218
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	156, 324
Hsp92II	CATG	3 cut(s)	61, 92, 359
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	1 cut(s)	346
MaeI	CTAG	2 cut(s)	180, 348
MaeII	ACGT	2 cut(s)	156, 324
MboII	GAAGA	3 cut(s)	116, 124, 259
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	2 cut(s)	62, 382
MlyI	GAGTC	3 cut(s)	166, 281, 334
MnlI	CCTC	5 cut(s)	64, 88, 138, 306, 324
MseI	TTAA	5 cut(s)	12, 201, 266, 372, 385
MslI	CAYNNNNRTG	3 cut(s)	56, 155, 323
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	4 cut(s)	132, 162, 302, 330
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	3 cut(s)	162, 302, 330
NciI	CCSGG	1 cut(s)	132
NlaIII	CATG	3 cut(s)	61, 92, 359
NlaIV	GGNNCC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	2 cut(s)	155, 323
PaeI	GCATGC	1 cut(s)	61
PasI	CCCWGGG	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	3 cut(s)	166, 280, 334
PpsI	GAGTC	3 cut(s)	166, 280, 334
PpuMI	RGGWCCY	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	3 cut(s)	160, 300, 328
PspGI	CCWGG	3 cut(s)	160, 300, 328
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	4 cut(s)	137, 164, 305, 332
PspPPI	RGGWCCY	1 cut(s)	305
RseI	CAYNNNNRTG	3 cut(s)	56, 155, 323
SaqAI	TTAA	5 cut(s)	12, 201, 266, 372, 385
SatI	GCNGC	1 cut(s)	360
Sau96I	GGNCC	4 cut(s)	137, 164, 305, 332
SchI	GAGTC	3 cut(s)	166, 281, 334
ScrFI	CCNGG	4 cut(s)	132, 162, 302, 330
SetI	ASST	6 cut(s)	28, 142, 159, 289, 310, 327
SfcI	CTRYAG	2 cut(s)	27, 231
SinI	GGWCC	4 cut(s)	137, 164, 305, 332
SmiMI	CAYNNNNRTG	3 cut(s)	56, 155, 323
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	2 cut(s)	62, 382
SsiI	CCGC	2 cut(s)	183, 351
SspMI	CTAG	2 cut(s)	180, 348
StyD4I	CCNGG	4 cut(s)	130, 160, 300, 328
TaiI	ACGT	2 cut(s)	159, 327
TaqI	TCGA	1 cut(s)	275
TasI	AATT	2 cut(s)	62, 382
Tru1I	TTAA	5 cut(s)	12, 201, 266, 372, 385
Tru9I	TTAA	5 cut(s)	12, 201, 266, 372, 385
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	40
VpaK11BI	GGWCC	4 cut(s)	137, 164, 305, 332
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	2 cut(s)	180, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.