Rh6AG311300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002148
Physical Location & Seq
Forward (+)
50987824 .. 50988492
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG311300.1

Sequence Viewer

Length: 669 bp
ATGCACTTGTCCGAGGCTGGCAGGATGTTGCATGACGAGGAAGAAAACTCGACGAAGAACGAACTTTTCGTGTTAATGGAGTCGAAGCAGAAAGGTGTTCCCCCTCCCGATGGTCCTAATGGGCCCACCAACAAGCCTGGTCCTACGACTCCTCCTGGTGTTCATGCTGCTTCAACCATTAACCAAAAAAAGTTTGCAGGCCACACTACTATAGAAAACTCGACGACGAACAAACTTTTCATTTTAATGGAGTCGAAGCCGAAGGGTGTTCCCCCTCCCGATGGTCCTAATGGGCACACCAACATGCCTGGTCCTACGACTCCTACTAGTGGTCATGCTGCTTCAACCAATAACCAAAGAAACTTTGCAGGCCACACTACTATAGAAAACTCGACGATGAAGGAGTCGAAGCAGAAGGGTGTTCCCCCTCCCGATGGTCCTAACGAGCACACCAACATGCCTGGACGTCCTACGACTCCTACTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTATAGAAAACTCGACGACGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGGGTGTTTCCCCTCCTGATGGTCCTAATGGGCACACCAACAAGCCTGGTCCTACGACTCCTACTAATGGTGATGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

23.35

Weight (kDa)

7.21

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 469
AcyI GRCGYC 1 cut(s) 466
AfiI CCNNNNNNNGG 7 cut(s) 110, 281, 329, 434, 485, 605, 653
AgsI TTSAA 3 cut(s) 174, 345, 501
AhlI ACTAGT 2 cut(s) 326, 482
AjnI CCWGG 5 cut(s) 136, 154, 307, 460, 631
Alw21I GWGCWC 1 cut(s) 450
AoxI GGCC 4 cut(s) 122, 199, 370, 526
ApaI GGGCCC 1 cut(s) 126
ApeKI GCWGC 4 cut(s) 167, 338, 494, 662
AspS9I GGNCC 9 cut(s) 113, 122, 123, 140, 284, 311, 437, 608, 635
AsuHPI GGTGA 1 cut(s) 668
AvaII GGWCC 7 cut(s) 113, 140, 284, 311, 437, 608, 635
BaeGI GKGCMC 3 cut(s) 126, 297, 621
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 4 cut(s) 154, 325, 481, 649
BccI CCATC 4 cut(s) 104, 275, 428, 599
BciT130I CCWGG 5 cut(s) 138, 156, 309, 462, 633
BcuI ACTAGT 2 cut(s) 326, 482
BfaI CTAG 2 cut(s) 327, 483
BfmI CTRYAG 3 cut(s) 210, 381, 537
BisI GCNGC 4 cut(s) 168, 339, 495, 663
BlsI GCNGC 4 cut(s) 169, 340, 496, 664
Bme1390I CCNGG 5 cut(s) 138, 156, 309, 462, 633
Bme18I GGWCC 7 cut(s) 113, 140, 284, 311, 437, 608, 635
BmgT120I GGNCC 9 cut(s) 113, 122, 123, 140, 284, 311, 437, 608, 635
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 5 cut(s) 138, 156, 309, 462, 633
BmsI GCATC 1 cut(s) 649
BsaHI GRCGYC 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 7 cut(s) 110, 281, 329, 434, 485, 605, 653
BseBI CCWGG 5 cut(s) 138, 156, 309, 462, 633
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 7 cut(s) 110, 281, 329, 434, 485, 605, 653
BseRI GAGGAG 1 cut(s) 141
BseSI GKGCMC 3 cut(s) 126, 297, 621
BseXI GCAGC 4 cut(s) 154, 325, 481, 649
BshFI GGCC 4 cut(s) 124, 201, 372, 528
BsiHKAI GWGCWC 1 cut(s) 450
BslI CCNNNNNNNGG 7 cut(s) 110, 281, 329, 434, 485, 605, 653
BsnI GGCC 4 cut(s) 124, 201, 372, 528
Bsp120I GGGCCC 1 cut(s) 122
Bsp1286I GDGCHC 4 cut(s) 126, 297, 450, 621
BspANI GGCC 4 cut(s) 124, 201, 372, 528
BspLI GGNNCC 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 12
BssNI GRCGYC 1 cut(s) 466
Bst2UI CCWGG 5 cut(s) 138, 156, 309, 462, 633
BstACI GRCGYC 1 cut(s) 466
BstC8I GCNNGC 4 cut(s) 19, 199, 370, 526
BstF5I GGATG 1 cut(s) 30
BstNI CCWGG 5 cut(s) 138, 156, 309, 462, 633
BstNSI RCATGY 2 cut(s) 307, 460
BstSCI CCNGG 5 cut(s) 136, 154, 307, 460, 631
BstSFI CTRYAG 3 cut(s) 210, 381, 537
BstSLI GKGCMC 3 cut(s) 126, 297, 621
BstV1I GCAGC 4 cut(s) 154, 325, 481, 649
BsuRI GGCC 4 cut(s) 124, 201, 372, 528
BtsCI GGATG 1 cut(s) 30
Cac8I GCNNGC 4 cut(s) 19, 199, 370, 526
Cfr13I GGNCC 9 cut(s) 113, 122, 123, 140, 284, 311, 437, 608, 635
CviAII CATG 6 cut(s) 32, 164, 304, 335, 457, 491
CviJI RGCY 8 cut(s) 17, 124, 136, 201, 259, 372, 528, 631
CviKI_1 RGCY 8 cut(s) 17, 124, 136, 201, 259, 372, 528, 631
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 7 cut(s) 113, 140, 284, 311, 437, 608, 635
EcoRII CCWGG 5 cut(s) 136, 154, 307, 460, 631
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 6 cut(s) 35, 167, 307, 338, 460, 494
FaiI YATR 9 cut(s) 33, 165, 212, 305, 336, 383, 458, 492, 539
FatI CATG 6 cut(s) 31, 163, 303, 334, 456, 490
Fnu4HI GCNGC 4 cut(s) 168, 339, 495, 663
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 4 cut(s) 168, 339, 495, 663
FspBI CTAG 2 cut(s) 327, 483
GluI GCNGC 4 cut(s) 168, 339, 495, 663
HaeIII GGCC 4 cut(s) 124, 201, 372, 528
Hin1I GRCGYC 1 cut(s) 466
Hin1II CATG 6 cut(s) 35, 167, 307, 338, 460, 494
HinfI GANTC 8 cut(s) 80, 148, 251, 319, 404, 475, 578, 643
HphI GGTGA 1 cut(s) 668
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 4 cut(s) 107, 278, 431, 602
Hpy99I CGWCG 6 cut(s) 55, 226, 229, 397, 553, 556
HpyAV CCTTC 3 cut(s) 256, 394, 409
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 5 cut(s) 4, 31, 197, 368, 524
HpySE526I ACGT 1 cut(s) 466
Hsp92I GRCGYC 1 cut(s) 466
Hsp92II CATG 6 cut(s) 35, 167, 307, 338, 460, 494
Lsp1109I GCAGC 4 cut(s) 154, 325, 481, 649
LweI GCATC 1 cut(s) 649
MaeI CTAG 2 cut(s) 327, 483
MaeII ACGT 1 cut(s) 466
MboII GAAGA 2 cut(s) 53, 67
MhlI GDGCHC 4 cut(s) 126, 297, 450, 621
MlyI GAGTC 8 cut(s) 89, 142, 260, 313, 413, 469, 587, 637
MnlI CCTC 7 cut(s) 7, 31, 114, 162, 285, 438, 609
MseI TTAA 6 cut(s) 74, 180, 245, 507, 572, 667
MslI CAYNNNNRTG 3 cut(s) 245, 302, 455
MspR9I CCNGG 5 cut(s) 138, 156, 309, 462, 633
MvaI CCWGG 5 cut(s) 138, 156, 309, 462, 633
NlaIII CATG 6 cut(s) 35, 167, 307, 338, 460, 494
NlaIV GGNNCC 1 cut(s) 124
NspI RCATGY 2 cut(s) 307, 460
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PkrI GCNGC 4 cut(s) 169, 340, 496, 664
PleI GAGTC 8 cut(s) 88, 142, 259, 313, 412, 469, 586, 637
PpsI GAGTC 8 cut(s) 88, 142, 259, 313, 412, 469, 586, 637
Psp6I CCWGG 5 cut(s) 136, 154, 307, 460, 631
PspGI CCWGG 5 cut(s) 136, 154, 307, 460, 631
PspN4I GGNNCC 1 cut(s) 124
PspOMI GGGCCC 1 cut(s) 122
PspPI GGNCC 9 cut(s) 113, 122, 123, 140, 284, 311, 437, 608, 635
RseI CAYNNNNRTG 3 cut(s) 245, 302, 455
SaqAI TTAA 6 cut(s) 74, 180, 245, 507, 572, 667
SatI GCNGC 4 cut(s) 168, 339, 495, 663
Sau96I GGNCC 9 cut(s) 113, 122, 123, 140, 284, 311, 437, 608, 635
SchI GAGTC 8 cut(s) 89, 142, 260, 313, 413, 469, 587, 637
ScrFI CCNGG 5 cut(s) 138, 156, 309, 462, 633
SduI GDGCHC 4 cut(s) 126, 297, 450, 621
SetI ASST 2 cut(s) 97, 469
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 3 cut(s) 210, 381, 537
SinI GGWCC 7 cut(s) 113, 140, 284, 311, 437, 608, 635
SmiMI CAYNNNNRTG 3 cut(s) 245, 302, 455
SpeI ACTAGT 2 cut(s) 326, 482
SspMI CTAG 2 cut(s) 327, 483
StyD4I CCNGG 5 cut(s) 136, 154, 307, 460, 631
TaiI ACGT 1 cut(s) 469
TaqI TCGA 8 cut(s) 50, 83, 221, 254, 392, 407, 548, 581
Tru1I TTAA 6 cut(s) 74, 180, 245, 507, 572, 667
Tru9I TTAA 6 cut(s) 74, 180, 245, 507, 572, 667
TseI GCWGC 4 cut(s) 167, 338, 494, 662
TspDTI ATGAA 3 cut(s) 152, 229, 413
VpaK11BI GGWCC 7 cut(s) 113, 140, 284, 311, 437, 608, 635
XceI RCATGY 2 cut(s) 307, 460
XspI CTAG 2 cut(s) 327, 483
ZraI GACGTC 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.