Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Forward (+)

26442047 .. 26442622

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG162500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGTGTTCTTAATCTTATTGGAGTTACAGCAGTTCTACTGCTATTTTTTATAAGCATGCACTTGTCCGAGGCTGGCAGGATGTTGCATGACGAGGAAGAAAACTCGACGACGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAGGGTGCTCCCCCTCCCGATGGTTCTAATCCTCACACCAACAAGCCTGGTCCTACGACTCCTCCTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAACTTTGCAGGCCACACTATTATAGAAAACTCGACGACGAACAAACTTTTCATTTTAATGGAGTCGAAGCAGAAGGCTGTTCATCCCCCTCCCGGTGGTCATAATGAGCAAACCGGCAAGCCTGGTCCTGCGACTCCTACTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTATAGAAAACTCGACGACGAATAAACTTTTCGCTTTAACGGAGTCGAAGCAGAAGGGTATTCCCCCTCCCGATGGTTCTAATGGGCACACCAACAAGCCTGGTCCTCCGACTGCTACTAGTGGTCATGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.06

Weight (kDa)

8.97

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AfiI	CCNNNNNNNGG	6 cut(s)	167, 215, 338, 341, 389, 512
AgsI	TTSAA	2 cut(s)	231, 405
AhlI	ACTAGT	2 cut(s)	386, 557
AjnI	CCWGG	3 cut(s)	193, 367, 538
Alw21I	GWGCWC	1 cut(s)	157
AoxI	GGCC	2 cut(s)	256, 430
ApeKI	GCWGC	3 cut(s)	224, 398, 569
AspS9I	GGNCC	3 cut(s)	197, 371, 542
AsuC2I	CCSGG	1 cut(s)	339
AvaII	GGWCC	3 cut(s)	197, 371, 542
BaeGI	GKGCMC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	211, 385, 556
BccI	CCATC	2 cut(s)	161, 506
BciT130I	CCWGG	3 cut(s)	195, 369, 540
BcnI	CCSGG	1 cut(s)	339
BcuI	ACTAGT	2 cut(s)	386, 557
BfaI	CTAG	3 cut(s)	213, 387, 558
BfmI	CTRYAG	1 cut(s)	441
BisI	GCNGC	3 cut(s)	225, 399, 570
BlsI	GCNGC	3 cut(s)	226, 400, 571
Bme1390I	CCNGG	4 cut(s)	195, 339, 369, 540
Bme18I	GGWCC	3 cut(s)	197, 371, 542
BmgT120I	GGNCC	3 cut(s)	197, 371, 542
BmrFI	CCNGG	4 cut(s)	195, 339, 369, 540
BpuMI	CCSGG	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	6 cut(s)	167, 215, 338, 341, 389, 512
Bse118I	RCCGGY	1 cut(s)	359
BseBI	CCWGG	3 cut(s)	195, 369, 540
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	87, 328
BseLI	CCNNNNNNNGG	6 cut(s)	167, 215, 338, 341, 389, 512
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	3 cut(s)	211, 385, 556
BshFI	GGCC	2 cut(s)	258, 432
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	339, 360
BslI	CCNNNNNNNGG	6 cut(s)	167, 215, 338, 341, 389, 512
BsnI	GGCC	2 cut(s)	258, 432
Bsp1286I	GDGCHC	2 cut(s)	157, 528
BspANI	GGCC	2 cut(s)	258, 432
BsrFI	RCCGGY	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	69
Bst2UI	CCWGG	3 cut(s)	195, 369, 540
BstC8I	GCNNGC	5 cut(s)	59, 76, 256, 365, 430
BstF5I	GGATG	2 cut(s)	87, 328
BstNI	CCWGG	3 cut(s)	195, 369, 540
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	4 cut(s)	193, 337, 367, 538
BstSFI	CTRYAG	1 cut(s)	441
BstSLI	GKGCMC	1 cut(s)	528
BstV1I	GCAGC	3 cut(s)	211, 385, 556
BsuRI	GGCC	2 cut(s)	258, 432
BtsCI	GGATG	2 cut(s)	87, 328
Cac8I	GCNNGC	5 cut(s)	59, 76, 256, 365, 430
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	3 cut(s)	197, 371, 542
CviAII	CATG	5 cut(s)	58, 89, 221, 395, 566
CviJI	RGCY	7 cut(s)	74, 193, 258, 323, 367, 432, 538
CviKI_1	RGCY	7 cut(s)	74, 193, 258, 323, 367, 432, 538
Eco47I	GGWCC	3 cut(s)	197, 371, 542
EcoRII	CCWGG	3 cut(s)	193, 367, 538
FaeI	CATG	5 cut(s)	61, 92, 224, 398, 569
FaiI	YATR	9 cut(s)	53, 59, 90, 222, 269, 348, 396, 443, 567
FatI	CATG	5 cut(s)	57, 88, 220, 394, 565
Fnu4HI	GCNGC	3 cut(s)	225, 399, 570
FokI	GGATG	2 cut(s)	94, 315
Fsp4HI	GCNGC	3 cut(s)	225, 399, 570
FspBI	CTAG	3 cut(s)	213, 387, 558
GluI	GCNGC	3 cut(s)	225, 399, 570
HaeIII	GGCC	2 cut(s)	258, 432
HapII	CCGG	2 cut(s)	339, 360
Hin1II	CATG	5 cut(s)	61, 92, 224, 398, 569
HinfI	GANTC	5 cut(s)	137, 205, 308, 379, 482
HpaII	CCGG	2 cut(s)	339, 360
Hpy188I	TCNGA	2 cut(s)	70, 549
Hpy188III	TCNNGA	2 cut(s)	164, 509
Hpy99I	CGWCG	6 cut(s)	112, 115, 283, 286, 457, 460
HpyAV	CCTTC	3 cut(s)	142, 313, 487
HpyCH4V	TGCA	4 cut(s)	61, 88, 254, 428
Hsp92II	CATG	5 cut(s)	61, 92, 224, 398, 569
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	3 cut(s)	211, 385, 556
MaeI	CTAG	3 cut(s)	213, 387, 558
MaeIII	GTNAC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	110
MhlI	GDGCHC	2 cut(s)	157, 528
MlyI	GAGTC	5 cut(s)	146, 199, 317, 373, 491
MmeI	TCCRAC	1 cut(s)	572
MnlI	CCTC	8 cut(s)	64, 88, 171, 189, 219, 345, 516, 555
MseI	TTAA	7 cut(s)	12, 131, 237, 302, 411, 476, 574
MslI	CAYNNNNRTG	1 cut(s)	302
MspI	CCGG	2 cut(s)	339, 360
MspR9I	CCNGG	4 cut(s)	195, 339, 369, 540
MvaI	CCWGG	3 cut(s)	195, 369, 540
NciI	CCSGG	1 cut(s)	339
NlaIII	CATG	5 cut(s)	61, 92, 224, 398, 569
NspI	RCATGY	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	226, 400, 571
PleI	GAGTC	5 cut(s)	145, 199, 316, 373, 490
PpsI	GAGTC	5 cut(s)	145, 199, 316, 373, 490
PsiI	TTATAA	1 cut(s)	53
Psp6I	CCWGG	3 cut(s)	193, 367, 538
PspGI	CCWGG	3 cut(s)	193, 367, 538
PspPI	GGNCC	3 cut(s)	197, 371, 542
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	7 cut(s)	12, 131, 237, 302, 411, 476, 574
SatI	GCNGC	3 cut(s)	225, 399, 570
Sau96I	GGNCC	3 cut(s)	197, 371, 542
SchI	GAGTC	5 cut(s)	146, 199, 317, 373, 491
ScrFI	CCNGG	4 cut(s)	195, 339, 369, 540
SduI	GDGCHC	2 cut(s)	157, 528
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	3 cut(s)	197, 371, 542
SmiMI	CAYNNNNRTG	1 cut(s)	302
SpeI	ACTAGT	2 cut(s)	386, 557
SphI	GCATGC	1 cut(s)	61
SspMI	CTAG	3 cut(s)	213, 387, 558
StyD4I	CCNGG	4 cut(s)	193, 337, 367, 538
TaqI	TCGA	6 cut(s)	107, 140, 278, 311, 452, 485
Tru1I	TTAA	7 cut(s)	12, 131, 237, 302, 411, 476, 574
Tru9I	TTAA	7 cut(s)	12, 131, 237, 302, 411, 476, 574
TseI	GCWGC	3 cut(s)	224, 398, 569
TspDTI	ATGAA	2 cut(s)	286, 317
TspGWI	ACGGA	1 cut(s)	494
VpaK11BI	GGWCC	3 cut(s)	197, 371, 542
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	3 cut(s)	213, 387, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.