Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Forward (+)

26082103 .. 26082675

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG160700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGTGTTCTTAATGTTATTGGAGTTACAGTAGTTCTACTGCTATTTTTCCTAAGCATGCACTTGTCCGAGGCTGGCAGGATGTTGCATGACGAGGAAGAAAACTCGACGACGAACAAACTTTTCGTTTTAACGGAGTCGAAGCAGAAGGGTATTCCCCCTCCCGATGGTCCTAATGGGCACACCGGCAAGCCTGGTCCTACGACTTCTACTAGTGGTCATGCTACTTCAACCATTAACCAAAGAAACTTTGCAGGCCAAACTACTATAGAAAACTCGACGATGAACAAACTTTTCGTTTTAACGGAGTCGAAGCAGAAGGGTATTCCCCCTCCCGATGGTCCTAATGGGCACACCGGCAAGCCTGGTCCTACGACTTCTACTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTATAGAAAACTCGACGACGAACAAACTTTTCGTTTTAACGGAGTCGAGGCAGAAGGGTGTTCCCCCTCCCGATGGTTCTAATGGGCACACCAACAAGCCTGGTCCTACGACTCCTACTAGTGGTCATGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

19.9

Weight (kDa)

9.01

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	4 cut(s)	167, 338, 509, 557
AgsI	TTSAA	2 cut(s)	231, 402
AhlI	ACTAGT	3 cut(s)	212, 383, 554
AjnI	CCWGG	3 cut(s)	193, 364, 535
AoxI	GGCC	2 cut(s)	256, 427
ApeKI	GCWGC	2 cut(s)	395, 566
AspS9I	GGNCC	5 cut(s)	170, 197, 341, 368, 539
AvaII	GGWCC	5 cut(s)	170, 197, 341, 368, 539
BaeGI	GKGCMC	3 cut(s)	183, 354, 525
BbvI	GCAGC	2 cut(s)	382, 553
BccI	CCATC	3 cut(s)	161, 332, 503
BciT130I	CCWGG	3 cut(s)	195, 366, 537
BcuI	ACTAGT	3 cut(s)	212, 383, 554
BfaI	CTAG	3 cut(s)	213, 384, 555
BfmI	CTRYAG	2 cut(s)	267, 438
BisI	GCNGC	2 cut(s)	396, 567
BlsI	GCNGC	2 cut(s)	397, 568
Bme1390I	CCNGG	3 cut(s)	195, 366, 537
Bme18I	GGWCC	5 cut(s)	170, 197, 341, 368, 539
BmgT120I	GGNCC	5 cut(s)	170, 197, 341, 368, 539
BmrFI	CCNGG	3 cut(s)	195, 366, 537
Bpu10I	CCTNAGC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 338, 509, 557
Bse118I	RCCGGY	2 cut(s)	185, 356
BseBI	CCWGG	3 cut(s)	195, 366, 537
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	4 cut(s)	167, 338, 509, 557
BseSI	GKGCMC	3 cut(s)	183, 354, 525
BseXI	GCAGC	2 cut(s)	382, 553
BshFI	GGCC	2 cut(s)	258, 429
BsiSI	CCGG	2 cut(s)	186, 357
BslI	CCNNNNNNNGG	4 cut(s)	167, 338, 509, 557
BsnI	GGCC	2 cut(s)	258, 429
Bsp1286I	GDGCHC	3 cut(s)	183, 354, 525
BspANI	GGCC	2 cut(s)	258, 429
BsrFI	RCCGGY	2 cut(s)	185, 356
BssAI	RCCGGY	2 cut(s)	185, 356
BssECI	CCNNGG	1 cut(s)	69
Bst2UI	CCWGG	3 cut(s)	195, 366, 537
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	6 cut(s)	59, 76, 191, 256, 362, 427
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	87
BstNI	CCWGG	3 cut(s)	195, 366, 537
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	3 cut(s)	193, 364, 535
BstSFI	CTRYAG	2 cut(s)	267, 438
BstSLI	GKGCMC	3 cut(s)	183, 354, 525
BstV1I	GCAGC	2 cut(s)	382, 553
BsuRI	GGCC	2 cut(s)	258, 429
BtsCI	GGATG	1 cut(s)	87
Cac8I	GCNNGC	6 cut(s)	59, 76, 191, 256, 362, 427
Cfr10I	RCCGGY	2 cut(s)	185, 356
Cfr13I	GGNCC	5 cut(s)	170, 197, 341, 368, 539
CviAII	CATG	5 cut(s)	58, 89, 221, 392, 563
CviJI	RGCY	6 cut(s)	74, 193, 258, 364, 429, 535
CviKI_1	RGCY	6 cut(s)	74, 193, 258, 364, 429, 535
DdeI	CTNAG	1 cut(s)	53
Eco47I	GGWCC	5 cut(s)	170, 197, 341, 368, 539
EcoRII	CCWGG	3 cut(s)	193, 364, 535
FaeI	CATG	5 cut(s)	61, 92, 224, 395, 566
FaiI	YATR	7 cut(s)	59, 90, 222, 269, 393, 440, 564
FatI	CATG	5 cut(s)	57, 88, 220, 391, 562
Fnu4HI	GCNGC	2 cut(s)	396, 567
FokI	GGATG	1 cut(s)	94
Fsp4HI	GCNGC	2 cut(s)	396, 567
FspBI	CTAG	3 cut(s)	213, 384, 555
GluI	GCNGC	2 cut(s)	396, 567
HaeIII	GGCC	2 cut(s)	258, 429
HapII	CCGG	2 cut(s)	186, 357
Hin1II	CATG	5 cut(s)	61, 92, 224, 395, 566
HinfI	GANTC	4 cut(s)	137, 308, 479, 547
HpaII	CCGG	2 cut(s)	186, 357
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	3 cut(s)	164, 335, 506
Hpy99I	CGWCG	5 cut(s)	112, 115, 283, 454, 457
HpyAV	CCTTC	3 cut(s)	142, 313, 484
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	4 cut(s)	61, 88, 254, 425
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	5 cut(s)	61, 92, 224, 395, 566
Lsp1109I	GCAGC	2 cut(s)	382, 553
MaeI	CTAG	3 cut(s)	213, 384, 555
MaeIII	GTNAC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	110
MhlI	GDGCHC	3 cut(s)	183, 354, 525
MlyI	GAGTC	4 cut(s)	146, 317, 488, 541
MnlI	CCTC	6 cut(s)	64, 88, 171, 342, 477, 513
MseI	TTAA	7 cut(s)	12, 131, 237, 302, 408, 473, 571
MspI	CCGG	2 cut(s)	186, 357
MspR9I	CCNGG	3 cut(s)	195, 366, 537
MvaI	CCWGG	3 cut(s)	195, 366, 537
NlaIII	CATG	5 cut(s)	61, 92, 224, 395, 566
NspI	RCATGY	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	397, 568
PleI	GAGTC	4 cut(s)	145, 316, 487, 541
PpsI	GAGTC	4 cut(s)	145, 316, 487, 541
Psp6I	CCWGG	3 cut(s)	193, 364, 535
PspGI	CCWGG	3 cut(s)	193, 364, 535
PspPI	GGNCC	5 cut(s)	170, 197, 341, 368, 539
SaqAI	TTAA	7 cut(s)	12, 131, 237, 302, 408, 473, 571
SatI	GCNGC	2 cut(s)	396, 567
Sau96I	GGNCC	5 cut(s)	170, 197, 341, 368, 539
SchI	GAGTC	4 cut(s)	146, 317, 488, 541
ScrFI	CCNGG	3 cut(s)	195, 366, 537
SduI	GDGCHC	3 cut(s)	183, 354, 525
SfcI	CTRYAG	2 cut(s)	267, 438
SinI	GGWCC	5 cut(s)	170, 197, 341, 368, 539
SpeI	ACTAGT	3 cut(s)	212, 383, 554
SphI	GCATGC	1 cut(s)	61
SspMI	CTAG	3 cut(s)	213, 384, 555
StyD4I	CCNGG	3 cut(s)	193, 364, 535
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	6 cut(s)	107, 140, 278, 311, 449, 482
Tru1I	TTAA	7 cut(s)	12, 131, 237, 302, 408, 473, 571
Tru9I	TTAA	7 cut(s)	12, 131, 237, 302, 408, 473, 571
TseI	GCWGC	2 cut(s)	395, 566
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	3 cut(s)	149, 320, 491
VpaK11BI	GGWCC	5 cut(s)	170, 197, 341, 368, 539
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	3 cut(s)	213, 384, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.