Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Reverse (-)

44467011 .. 44467635

Gene Structure 625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013934

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGTGTTCTTAATGTTATTGGAGTTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCACTTGTCCGAGGCTGGCAGGATGTTGCATGACGAGGAAGAAAACTCGACGACGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAGGCTGTTCATCCCCCTCCCGATGGTCATAACGAGCACACCGGCCAGCCTGGTCCTGCGACTCCTCCTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAACTTCGCAGGCCACACTACTATAGAAAACTCGACGACGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAGGCTGTTCATCCCCCTCCCGATGGTCATAATGAGCACACCGGCCAGCCTAGTCCTGCGACTCCTACTAGTGGTCACGCTGCTTCAACCATTAACCAGAGAAACTTTGCAGGCTACACTACTATAGAAAACTCGACGACGAACAAACTTTTCGTTTTAACGGAGTCGAAGCAGAAGGGTATTCCCCCTCCCGATGGTTCTAATGGGCACACCAACAAGCCTGGCCCTACGACTCCTACTAGTGGTCATGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

20.37

Weight (kDa)

6.66

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	190, 364
AfiI	CCNNNNNNNGG	6 cut(s)	170, 218, 344, 392, 515, 563
AgsI	TTSAA	2 cut(s)	234, 408
AhlI	ACTAGT	2 cut(s)	389, 560
AjnI	CCWGG	2 cut(s)	196, 541
Alw21I	GWGCWC	2 cut(s)	186, 360
AoxI	GGCC	4 cut(s)	190, 259, 364, 544
ApeKI	GCWGC	3 cut(s)	227, 401, 572
AspS9I	GGNCC	2 cut(s)	200, 545
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	531
Bbv12I	GWGCWC	2 cut(s)	186, 360
BbvI	GCAGC	3 cut(s)	214, 388, 559
BccI	CCATC	3 cut(s)	164, 338, 509
BciT130I	CCWGG	2 cut(s)	198, 543
BcuI	ACTAGT	2 cut(s)	389, 560
BfaI	CTAG	4 cut(s)	216, 372, 390, 561
BfmI	CTRYAG	2 cut(s)	270, 444
BisI	GCNGC	3 cut(s)	228, 402, 573
BlsI	GCNGC	3 cut(s)	229, 403, 574
Bme1390I	CCNGG	2 cut(s)	198, 543
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	200, 545
BmrFI	CCNGG	2 cut(s)	198, 543
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	6 cut(s)	170, 218, 344, 392, 515, 563
Bse118I	RCCGGY	2 cut(s)	188, 362
BseBI	CCWGG	2 cut(s)	198, 543
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	3 cut(s)	87, 157, 331
BseLI	CCNNNNNNNGG	6 cut(s)	170, 218, 344, 392, 515, 563
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	3 cut(s)	214, 388, 559
BshFI	GGCC	4 cut(s)	192, 261, 366, 546
BsiHKAI	GWGCWC	2 cut(s)	186, 360
BsiSI	CCGG	2 cut(s)	189, 363
BslI	CCNNNNNNNGG	6 cut(s)	170, 218, 344, 392, 515, 563
BsnI	GGCC	4 cut(s)	192, 261, 366, 546
Bsp1286I	GDGCHC	3 cut(s)	186, 360, 531
BspANI	GGCC	4 cut(s)	192, 261, 366, 546
BsrFI	RCCGGY	2 cut(s)	188, 362
BssAI	RCCGGY	2 cut(s)	188, 362
BssECI	CCNNGG	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	198, 543
BstC8I	GCNNGC	6 cut(s)	59, 76, 194, 259, 368, 433
BstF5I	GGATG	3 cut(s)	87, 157, 331
BstNI	CCWGG	2 cut(s)	198, 543
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	2 cut(s)	196, 541
BstSFI	CTRYAG	2 cut(s)	270, 444
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	214, 388, 559
BsuRI	GGCC	4 cut(s)	192, 261, 366, 546
BtsCI	GGATG	3 cut(s)	87, 157, 331
Cac8I	GCNNGC	6 cut(s)	59, 76, 194, 259, 368, 433
Cfr10I	RCCGGY	2 cut(s)	188, 362
Cfr13I	GGNCC	2 cut(s)	200, 545
CviAII	CATG	4 cut(s)	58, 89, 224, 569
EaeI	YGGCCR	2 cut(s)	190, 364
Eco47I	GGWCC	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	196, 541
FaeI	CATG	4 cut(s)	61, 92, 227, 572
FaiI	YATR	9 cut(s)	53, 59, 90, 177, 225, 272, 351, 446, 570
FatI	CATG	4 cut(s)	57, 88, 223, 568
Fnu4HI	GCNGC	3 cut(s)	228, 402, 573
FokI	GGATG	3 cut(s)	94, 144, 318
Fsp4HI	GCNGC	3 cut(s)	228, 402, 573
FspBI	CTAG	4 cut(s)	216, 372, 390, 561
GluI	GCNGC	3 cut(s)	228, 402, 573
HaeIII	GGCC	4 cut(s)	192, 261, 366, 546
HapII	CCGG	2 cut(s)	189, 363
Hin1II	CATG	4 cut(s)	61, 92, 227, 572
HinfI	GANTC	6 cut(s)	137, 208, 311, 382, 485, 553
HpaII	CCGG	2 cut(s)	189, 363
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	3 cut(s)	167, 341, 512
Hpy99I	CGWCG	6 cut(s)	112, 115, 286, 289, 460, 463
HpyAV	CCTTC	3 cut(s)	142, 316, 490
HpyCH4V	TGCA	3 cut(s)	61, 88, 431
Hsp92II	CATG	4 cut(s)	61, 92, 227, 572
Lsp1109I	GCAGC	3 cut(s)	214, 388, 559
MaeI	CTAG	4 cut(s)	216, 372, 390, 561
MaeIII	GTNAC	2 cut(s)	25, 395
MboII	GAAGA	1 cut(s)	110
MhlI	GDGCHC	3 cut(s)	186, 360, 531
MlyI	GAGTC	6 cut(s)	146, 202, 320, 376, 494, 547
MnlI	CCTC	6 cut(s)	64, 88, 174, 222, 348, 519
MseI	TTAA	7 cut(s)	12, 131, 240, 305, 414, 479, 577
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	2 cut(s)	189, 363
MspR9I	CCNGG	2 cut(s)	198, 543
MvaI	CCWGG	2 cut(s)	198, 543
NlaIII	CATG	4 cut(s)	61, 92, 227, 572
NmuCI	GTSAC	1 cut(s)	395
NspI	RCATGY	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	229, 403, 574
PleI	GAGTC	6 cut(s)	145, 202, 319, 376, 493, 547
PpsI	GAGTC	6 cut(s)	145, 202, 319, 376, 493, 547
Psp6I	CCWGG	2 cut(s)	196, 541
PspGI	CCWGG	2 cut(s)	196, 541
PspPI	GGNCC	2 cut(s)	200, 545
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	7 cut(s)	12, 131, 240, 305, 414, 479, 577
SatI	GCNGC	3 cut(s)	228, 402, 573
Sau96I	GGNCC	2 cut(s)	200, 545
SchI	GAGTC	6 cut(s)	146, 202, 320, 376, 494, 547
ScrFI	CCNGG	2 cut(s)	198, 543
SduI	GDGCHC	3 cut(s)	186, 360, 531
SfcI	CTRYAG	2 cut(s)	270, 444
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	56
SpeI	ACTAGT	2 cut(s)	389, 560
SphI	GCATGC	1 cut(s)	61
SspMI	CTAG	4 cut(s)	216, 372, 390, 561
StyD4I	CCNGG	2 cut(s)	196, 541
TaqI	TCGA	6 cut(s)	107, 140, 281, 314, 455, 488
Tru1I	TTAA	7 cut(s)	12, 131, 240, 305, 414, 479, 577
Tru9I	TTAA	7 cut(s)	12, 131, 240, 305, 414, 479, 577
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	3 cut(s)	227, 401, 572
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	3 cut(s)	40, 146, 320
TspGWI	ACGGA	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	200
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	4 cut(s)	216, 372, 390, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.