Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Reverse (-)

15398790 .. 15399771

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG175500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGTGTTCTTAATGTTATCGGAGTTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGACGAGGACGAAAACTTGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACCTAATCCTACCACCAACGTGCCTGGTCCTGCGACTCCTACTAGCGGTCATACTGCAACCATTAACCAAAGAAACTTTGTAGGCCACACTACTACAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGTCAGCCTCCCCAGGGACCTAATCCTCCCACCAACGTGCCTGGTCCTGCGACTCCTTCTAGCGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTACAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTTCCCAGGGACCTAATGGTAACACCAACGTGCCTGGTCCTAAGCCTCCTACTAGTGGTTATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGATCCCCCTTCCGGTGGACATAATCCGACCACCACGCCTGGTCCTAAGCCTCCTGCTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

25.09

Weight (kDa)

10.09

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	183, 351
AclWI	GGATC	1 cut(s)	620
AcyI	GRCGYC	1 cut(s)	460
AgsI	TTSAA	1 cut(s)	699
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	6 cut(s)	160, 300, 328, 468, 496, 661
AleI	CACNNNNGTG	3 cut(s)	155, 323, 491
AlwI	GGATC	1 cut(s)	620
AoxI	GGCC	3 cut(s)	220, 388, 556
ApeKI	GCWGC	3 cut(s)	359, 527, 692
AspS9I	GGNCC	7 cut(s)	137, 164, 305, 332, 473, 500, 665
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	635
AvaII	GGWCC	7 cut(s)	137, 164, 305, 332, 473, 500, 665
BbvI	GCAGC	3 cut(s)	346, 514, 679
BciT130I	CCWGG	6 cut(s)	162, 302, 330, 470, 498, 663
BcnI	CCSGG	1 cut(s)	132
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	4 cut(s)	180, 348, 516, 681
BfmI	CTRYAG	3 cut(s)	231, 399, 567
BisI	GCNGC	3 cut(s)	360, 528, 693
BlsI	GCNGC	3 cut(s)	361, 529, 694
Bme1390I	CCNGG	7 cut(s)	132, 162, 302, 330, 470, 498, 663
Bme18I	GGWCC	7 cut(s)	137, 164, 305, 332, 473, 500, 665
BmgT120I	GGNCC	7 cut(s)	137, 164, 305, 332, 473, 500, 665
BmiI	GGNNCC	2 cut(s)	306, 474
BmrFI	CCNGG	7 cut(s)	132, 162, 302, 330, 470, 498, 663
Bpu10I	CCTNAGC	2 cut(s)	504, 669
BpuMI	CCSGG	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	460
BsaJI	CCNNGG	4 cut(s)	300, 301, 468, 469
BsaWI	WCCGGW	1 cut(s)	635
BseBI	CCWGG	6 cut(s)	162, 302, 330, 470, 498, 663
BseDI	CCNNGG	4 cut(s)	300, 301, 468, 469
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	346, 514, 679
BshFI	GGCC	3 cut(s)	222, 390, 558
BsiSI	CCGG	2 cut(s)	132, 636
BslFI	GGGAC	2 cut(s)	318, 486
BsmFI	GGGAC	2 cut(s)	318, 486
BsnI	GGCC	3 cut(s)	222, 390, 558
Bsp143I	GATC	1 cut(s)	625
BspACI	CCGC	2 cut(s)	183, 351
BspANI	GGCC	3 cut(s)	222, 390, 558
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	306, 474
BspPI	GGATC	1 cut(s)	620
BssECI	CCNNGG	4 cut(s)	300, 301, 468, 469
BssMI	GATC	1 cut(s)	625
BssNI	GRCGYC	1 cut(s)	460
Bst2UI	CCWGG	6 cut(s)	162, 302, 330, 470, 498, 663
Bst4CI	ACNGT	1 cut(s)	568
BstACI	GRCGYC	1 cut(s)	460
BstC8I	GCNNGC	4 cut(s)	59, 76, 388, 556
BstDEI	CTNAG	3 cut(s)	69, 504, 669
BstKTI	GATC	1 cut(s)	628
BstMBI	GATC	1 cut(s)	625
BstNI	CCWGG	6 cut(s)	162, 302, 330, 470, 498, 663
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	7 cut(s)	130, 160, 300, 328, 468, 496, 661
BstSFI	CTRYAG	3 cut(s)	231, 399, 567
BstV1I	GCAGC	3 cut(s)	346, 514, 679
BsuRI	GGCC	3 cut(s)	222, 390, 558
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	4 cut(s)	59, 76, 388, 556
Cfr13I	GGNCC	7 cut(s)	137, 164, 305, 332, 473, 500, 665
CseI	GACGC	1 cut(s)	468
CviAII	CATG	4 cut(s)	58, 89, 356, 689
CviJI	RGCY	8 cut(s)	74, 119, 222, 295, 390, 508, 558, 673
CviKI_1	RGCY	8 cut(s)	74, 119, 222, 295, 390, 508, 558, 673
DdeI	CTNAG	3 cut(s)	69, 504, 669
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
Eco47I	GGWCC	7 cut(s)	137, 164, 305, 332, 473, 500, 665
EcoO109I	RGGNCCY	2 cut(s)	305, 473
EcoRII	CCWGG	6 cut(s)	160, 300, 328, 468, 496, 661
FaeI	CATG	4 cut(s)	61, 92, 359, 692
FaiI	YATR	8 cut(s)	53, 59, 90, 189, 357, 525, 645, 690
FaqI	GGGAC	2 cut(s)	318, 486
FatI	CATG	4 cut(s)	57, 88, 355, 688
Fnu4HI	GCNGC	3 cut(s)	360, 528, 693
Fsp4HI	GCNGC	3 cut(s)	360, 528, 693
FspBI	CTAG	4 cut(s)	180, 348, 516, 681
GluI	GCNGC	3 cut(s)	360, 528, 693
HaeIII	GGCC	3 cut(s)	222, 390, 558
HapII	CCGG	2 cut(s)	132, 636
HgaI	GACGC	1 cut(s)	468
Hin1I	GRCGYC	1 cut(s)	460
Hin1II	CATG	4 cut(s)	61, 92, 359, 692
HinfI	GANTC	5 cut(s)	172, 272, 340, 440, 608
HpaII	CCGG	2 cut(s)	132, 636
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	3 cut(s)	137, 458, 641
Hpy188I	TCNGA	3 cut(s)	23, 70, 651
Hpy8I	GTNNAC	3 cut(s)	137, 458, 641
HpyAV	CCTTC	4 cut(s)	109, 354, 474, 642
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	3 cut(s)	156, 324, 492
HpyCH4V	TGCA	7 cut(s)	61, 88, 194, 362, 386, 530, 554
HpyF3I	CTNAG	3 cut(s)	69, 504, 669
HpySE526I	ACGT	3 cut(s)	156, 324, 492
Hsp92I	GRCGYC	1 cut(s)	460
Hsp92II	CATG	4 cut(s)	61, 92, 359, 692
Kzo9I	GATC	1 cut(s)	625
Lsp1109I	GCAGC	3 cut(s)	346, 514, 679
MaeI	CTAG	4 cut(s)	180, 348, 516, 681
MaeII	ACGT	3 cut(s)	156, 324, 492
MaeIII	GTNAC	2 cut(s)	25, 482
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	5 cut(s)	116, 124, 259, 427, 595
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	1 cut(s)	62
MlyI	GAGTC	5 cut(s)	166, 281, 334, 449, 617
MmeI	TCCRAC	1 cut(s)	674
MnlI	CCTC	7 cut(s)	64, 88, 138, 306, 324, 519, 684
MseI	TTAA	8 cut(s)	12, 201, 266, 369, 434, 537, 602, 705
MslI	CAYNNNNRTG	4 cut(s)	56, 155, 323, 491
MspI	CCGG	2 cut(s)	132, 636
MspR9I	CCNGG	7 cut(s)	132, 162, 302, 330, 470, 498, 663
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	6 cut(s)	162, 302, 330, 470, 498, 663
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	4 cut(s)	61, 92, 359, 692
NlaIV	GGNNCC	2 cut(s)	306, 474
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	3 cut(s)	155, 323, 491
PaeI	GCATGC	1 cut(s)	61
PasI	CCCWGGG	2 cut(s)	301, 469
PkrI	GCNGC	3 cut(s)	361, 529, 694
PleI	GAGTC	5 cut(s)	166, 280, 334, 448, 616
PpsI	GAGTC	5 cut(s)	166, 280, 334, 448, 616
PpuMI	RGGWCCY	2 cut(s)	305, 473
Psp5II	RGGWCCY	2 cut(s)	305, 473
Psp6I	CCWGG	6 cut(s)	160, 300, 328, 468, 496, 661
PspGI	CCWGG	6 cut(s)	160, 300, 328, 468, 496, 661
PspN4I	GGNNCC	2 cut(s)	306, 474
PspPI	GGNCC	7 cut(s)	137, 164, 305, 332, 473, 500, 665
PspPPI	RGGWCCY	2 cut(s)	305, 473
RseI	CAYNNNNRTG	4 cut(s)	56, 155, 323, 491
SaqAI	TTAA	8 cut(s)	12, 201, 266, 369, 434, 537, 602, 705
SatI	GCNGC	3 cut(s)	360, 528, 693
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	7 cut(s)	137, 164, 305, 332, 473, 500, 665
SchI	GAGTC	5 cut(s)	166, 281, 334, 449, 617
ScrFI	CCNGG	7 cut(s)	132, 162, 302, 330, 470, 498, 663
SetI	ASST	9 cut(s)	142, 159, 289, 310, 327, 457, 478, 495, 625
SfcI	CTRYAG	3 cut(s)	231, 399, 567
SinI	GGWCC	7 cut(s)	137, 164, 305, 332, 473, 500, 665
SmiMI	CAYNNNNRTG	4 cut(s)	56, 155, 323, 491
SpeI	ACTAGT	1 cut(s)	515
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	2 cut(s)	183, 351
SspMI	CTAG	4 cut(s)	180, 348, 516, 681
StyD4I	CCNGG	7 cut(s)	130, 160, 300, 328, 468, 496, 661
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	3 cut(s)	159, 327, 495
TaqI	TCGA	3 cut(s)	275, 443, 611
TasI	AATT	1 cut(s)	62
Tru1I	TTAA	8 cut(s)	12, 201, 266, 369, 434, 537, 602, 705
Tru9I	TTAA	8 cut(s)	12, 201, 266, 369, 434, 537, 602, 705
TscAI	CASTG	1 cut(s)	571
TseI	GCWGC	3 cut(s)	359, 527, 692
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	571
VpaK11BI	GGWCC	7 cut(s)	137, 164, 305, 332, 473, 500, 665
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XspI	CTAG	4 cut(s)	180, 348, 516, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.