Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Reverse (-)

51459845 .. 51460573

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG328200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGTGTTCTTAATGTTATCGGAGTTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGAGCATGACGAGGACGAAAACTTGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACCTAATCCTACCACCAACGTGCCTGGTCCTGCGACTCCTACTAGCGGTCATACTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTAGAGAAAACTTGACGAAGAACAAACTTCTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGTCAGCCTCCCCAGGGACCTAATCCTCCCACCAACGTGCCTGGTCCTGCGACTCCTACTAGCGGTCATGTTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTACTACAGAAAACTTGACGAAGAACAAACTTTTCGTTGTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTTCCCAGGGACCTAATGGTAACACCAACGTGCCTGGTCCTAAGCCTCCTACTAGTGGTTATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAAGTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGATCCCCCTTCCGGTGGACATAATCCGACCACCACCACGCCTGGTCCTAAGCCTCCTGCTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

25.48

Weight (kDa)

10.09

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	189, 357
AclWI	GGATC	1 cut(s)	626
AcyI	GRCGYC	1 cut(s)	466
AgsI	TTSAA	1 cut(s)	708
AhlI	ACTAGT	1 cut(s)	521
AjnI	CCWGG	6 cut(s)	166, 306, 334, 474, 502, 670
AleI	CACNNNNGTG	3 cut(s)	161, 329, 497
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	3 cut(s)	226, 394, 562
ApeKI	GCWGC	2 cut(s)	533, 701
AspS9I	GGNCC	7 cut(s)	143, 170, 311, 338, 479, 506, 674
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	641
AvaII	GGWCC	7 cut(s)	143, 170, 311, 338, 479, 506, 674
BbvI	GCAGC	2 cut(s)	520, 688
BciT130I	CCWGG	6 cut(s)	168, 308, 336, 476, 504, 672
BcnI	CCSGG	1 cut(s)	138
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	5 cut(s)	186, 237, 354, 522, 690
BfmI	CTRYAG	2 cut(s)	405, 573
BisI	GCNGC	2 cut(s)	534, 702
BlsI	GCNGC	2 cut(s)	535, 703
Bme1390I	CCNGG	7 cut(s)	138, 168, 308, 336, 476, 504, 672
Bme18I	GGWCC	7 cut(s)	143, 170, 311, 338, 479, 506, 674
BmgT120I	GGNCC	7 cut(s)	143, 170, 311, 338, 479, 506, 674
BmiI	GGNNCC	2 cut(s)	312, 480
BmrFI	CCNGG	7 cut(s)	138, 168, 308, 336, 476, 504, 672
Bpu10I	CCTNAGC	2 cut(s)	510, 678
BpuMI	CCSGG	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	466
BsaJI	CCNNGG	4 cut(s)	306, 307, 474, 475
BsaWI	WCCGGW	1 cut(s)	641
BseBI	CCWGG	6 cut(s)	168, 308, 336, 476, 504, 672
BseDI	CCNNGG	4 cut(s)	306, 307, 474, 475
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	520, 688
BshFI	GGCC	3 cut(s)	228, 396, 564
BsiSI	CCGG	2 cut(s)	138, 642
BslFI	GGGAC	2 cut(s)	324, 492
BsmFI	GGGAC	2 cut(s)	324, 492
BsnI	GGCC	3 cut(s)	228, 396, 564
Bsp143I	GATC	1 cut(s)	631
BspACI	CCGC	2 cut(s)	189, 357
BspANI	GGCC	3 cut(s)	228, 396, 564
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	312, 480
BspPI	GGATC	1 cut(s)	626
BssECI	CCNNGG	4 cut(s)	306, 307, 474, 475
BssMI	GATC	1 cut(s)	631
BssNI	GRCGYC	1 cut(s)	466
Bst2UI	CCWGG	6 cut(s)	168, 308, 336, 476, 504, 672
Bst4CI	ACNGT	1 cut(s)	574
BstACI	GRCGYC	1 cut(s)	466
BstC8I	GCNNGC	5 cut(s)	59, 76, 226, 394, 562
BstDEI	CTNAG	3 cut(s)	69, 510, 678
BstKTI	GATC	1 cut(s)	634
BstMBI	GATC	1 cut(s)	631
BstNI	CCWGG	6 cut(s)	168, 308, 336, 476, 504, 672
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	7 cut(s)	136, 166, 306, 334, 474, 502, 670
BstSFI	CTRYAG	2 cut(s)	405, 573
BstV1I	GCAGC	2 cut(s)	520, 688
BsuRI	GGCC	3 cut(s)	228, 396, 564
BtsIMutI	CAGTG	1 cut(s)	570
Cac8I	GCNNGC	5 cut(s)	59, 76, 226, 394, 562
Cfr13I	GGNCC	7 cut(s)	143, 170, 311, 338, 479, 506, 674
CseI	GACGC	1 cut(s)	474
CviAII	CATG	5 cut(s)	58, 89, 95, 362, 698
CviJI	RGCY	8 cut(s)	74, 125, 228, 301, 396, 514, 564, 682
CviKI_1	RGCY	8 cut(s)	74, 125, 228, 301, 396, 514, 564, 682
DdeI	CTNAG	3 cut(s)	69, 510, 678
DpnI	GATC	1 cut(s)	633
DpnII	GATC	1 cut(s)	631
Eco47I	GGWCC	7 cut(s)	143, 170, 311, 338, 479, 506, 674
EcoO109I	RGGNCCY	2 cut(s)	311, 479
EcoRII	CCWGG	6 cut(s)	166, 306, 334, 474, 502, 670
FaeI	CATG	5 cut(s)	61, 92, 98, 365, 701
FaiI	YATR	9 cut(s)	53, 59, 90, 96, 195, 363, 531, 651, 699
FaqI	GGGAC	2 cut(s)	324, 492
FatI	CATG	5 cut(s)	57, 88, 94, 361, 697
Fnu4HI	GCNGC	2 cut(s)	534, 702
Fsp4HI	GCNGC	2 cut(s)	534, 702
FspBI	CTAG	5 cut(s)	186, 237, 354, 522, 690
GluI	GCNGC	2 cut(s)	534, 702
HaeIII	GGCC	3 cut(s)	228, 396, 564
HapII	CCGG	2 cut(s)	138, 642
HgaI	GACGC	1 cut(s)	474
Hin1I	GRCGYC	1 cut(s)	466
Hin1II	CATG	5 cut(s)	61, 92, 98, 365, 701
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	5 cut(s)	178, 278, 346, 446, 614
HpaII	CCGG	2 cut(s)	138, 642
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	4 cut(s)	143, 464, 585, 647
Hpy188I	TCNGA	3 cut(s)	23, 70, 657
Hpy8I	GTNNAC	4 cut(s)	143, 464, 585, 647
HpyAV	CCTTC	3 cut(s)	115, 480, 648
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	3 cut(s)	162, 330, 498
HpyCH4V	TGCA	8 cut(s)	61, 88, 200, 224, 368, 392, 536, 560
HpyF3I	CTNAG	3 cut(s)	69, 510, 678
HpySE526I	ACGT	3 cut(s)	162, 330, 498
Hsp92I	GRCGYC	1 cut(s)	466
Hsp92II	CATG	5 cut(s)	61, 92, 98, 365, 701
Kzo9I	GATC	1 cut(s)	631
Lsp1109I	GCAGC	2 cut(s)	520, 688
MaeI	CTAG	5 cut(s)	186, 237, 354, 522, 690
MaeII	ACGT	3 cut(s)	162, 330, 498
MaeIII	GTNAC	2 cut(s)	25, 488
MalI	GATC	1 cut(s)	633
MboI	GATC	1 cut(s)	631
MboII	GAAGA	5 cut(s)	122, 130, 265, 433, 601
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	2 cut(s)	62, 724
MlyI	GAGTC	5 cut(s)	172, 287, 340, 455, 623
MmeI	TCCRAC	1 cut(s)	680
MnlI	CCTC	7 cut(s)	64, 94, 144, 312, 330, 525, 693
MseI	TTAA	8 cut(s)	12, 207, 272, 375, 543, 608, 714, 727
MslI	CAYNNNNRTG	5 cut(s)	56, 93, 161, 329, 497
MspI	CCGG	2 cut(s)	138, 642
MspR9I	CCNGG	7 cut(s)	138, 168, 308, 336, 476, 504, 672
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	6 cut(s)	168, 308, 336, 476, 504, 672
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	631
NlaIII	CATG	5 cut(s)	61, 92, 98, 365, 701
NlaIV	GGNNCC	2 cut(s)	312, 480
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	3 cut(s)	161, 329, 497
PaeI	GCATGC	1 cut(s)	61
PasI	CCCWGGG	2 cut(s)	307, 475
PkrI	GCNGC	2 cut(s)	535, 703
PleI	GAGTC	5 cut(s)	172, 286, 340, 454, 622
PpsI	GAGTC	5 cut(s)	172, 286, 340, 454, 622
PpuMI	RGGWCCY	2 cut(s)	311, 479
Psp5II	RGGWCCY	2 cut(s)	311, 479
Psp6I	CCWGG	6 cut(s)	166, 306, 334, 474, 502, 670
PspGI	CCWGG	6 cut(s)	166, 306, 334, 474, 502, 670
PspN4I	GGNNCC	2 cut(s)	312, 480
PspPI	GGNCC	7 cut(s)	143, 170, 311, 338, 479, 506, 674
PspPPI	RGGWCCY	2 cut(s)	311, 479
RseI	CAYNNNNRTG	5 cut(s)	56, 93, 161, 329, 497
SaqAI	TTAA	8 cut(s)	12, 207, 272, 375, 543, 608, 714, 727
SatI	GCNGC	2 cut(s)	534, 702
Sau3AI	GATC	1 cut(s)	631
Sau96I	GGNCC	7 cut(s)	143, 170, 311, 338, 479, 506, 674
SchI	GAGTC	5 cut(s)	172, 287, 340, 455, 623
ScrFI	CCNGG	7 cut(s)	138, 168, 308, 336, 476, 504, 672
SetI	ASST	9 cut(s)	148, 165, 295, 316, 333, 463, 484, 501, 631
SfcI	CTRYAG	2 cut(s)	405, 573
SinI	GGWCC	7 cut(s)	143, 170, 311, 338, 479, 506, 674
SmiMI	CAYNNNNRTG	5 cut(s)	56, 93, 161, 329, 497
SpeI	ACTAGT	1 cut(s)	521
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	2 cut(s)	62, 724
SsiI	CCGC	2 cut(s)	189, 357
SspMI	CTAG	5 cut(s)	186, 237, 354, 522, 690
StyD4I	CCNGG	7 cut(s)	136, 166, 306, 334, 474, 502, 670
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	3 cut(s)	165, 333, 501
TaqI	TCGA	3 cut(s)	281, 449, 617
TasI	AATT	2 cut(s)	62, 724
Tru1I	TTAA	8 cut(s)	12, 207, 272, 375, 543, 608, 714, 727
Tru9I	TTAA	8 cut(s)	12, 207, 272, 375, 543, 608, 714, 727
TscAI	CASTG	1 cut(s)	577
TseI	GCWGC	2 cut(s)	533, 701
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	577
VpaK11BI	GGWCC	7 cut(s)	143, 170, 311, 338, 479, 506, 674
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XspI	CTAG	5 cut(s)	186, 237, 354, 522, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.