Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Reverse (-)

17168591 .. 17169301

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012287

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGTGTTCTTAATGTTATCAGAGTTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGACGAGGATGAAAACTCGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACATAATGGTCACACCAACGTGCCCGGTCCTGCGACTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACAGAAAACTCGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTCCCCAGGGACCGAATCCTCCCACCAACGTGCCTGGTCCTAAGCCTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACCTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGAAGCCCTCCCCAGGGACATAATCCTCCCACCAACGTGCCTGGTCCTAAGCCTCCTACTAGTAGTTATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAGGGTACTCCCCCTCCCGGTGGACCTAATCCGCCCACCAACACGCCTGGTCATAAGCCTCCTGCTAGTGGTCATACTACTTCAACCATTAACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

24.92

Weight (kDa)

10.19

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	144
AciI	CCGC	1 cut(s)	644
AcyI	GRCGYC	1 cut(s)	286
AfaI	GTAC	1 cut(s)	619
AgsI	TTSAA	1 cut(s)	696
AhlI	ACTAGT	3 cut(s)	179, 341, 509
AjnI	CCWGG	5 cut(s)	294, 322, 462, 490, 658
AleI	CACNNNNGTG	3 cut(s)	155, 317, 485
AoxI	GGCC	3 cut(s)	220, 382, 550
ApeKI	GCWGC	3 cut(s)	191, 353, 521
AspS9I	GGNCC	5 cut(s)	164, 299, 326, 494, 635
AsuC2I	CCSGG	3 cut(s)	132, 162, 630
AvaII	GGWCC	5 cut(s)	164, 299, 326, 494, 635
BaeGI	GKGCMC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	178, 340, 508
BciT130I	CCWGG	5 cut(s)	296, 324, 464, 492, 660
BcnI	CCSGG	3 cut(s)	132, 162, 630
BcuI	ACTAGT	3 cut(s)	179, 341, 509
BfaI	CTAG	4 cut(s)	180, 342, 510, 678
BfmI	CTRYAG	2 cut(s)	393, 561
BisI	GCNGC	3 cut(s)	192, 354, 522
BlsI	GCNGC	3 cut(s)	193, 355, 523
Bme1390I	CCNGG	8 cut(s)	132, 162, 296, 324, 464, 492, 630, 660
Bme18I	GGWCC	5 cut(s)	164, 299, 326, 494, 635
BmgT120I	GGNCC	5 cut(s)	164, 299, 326, 494, 635
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	8 cut(s)	132, 162, 296, 324, 464, 492, 630, 660
Bpu10I	CCTNAGC	2 cut(s)	330, 498
BpuMI	CCSGG	3 cut(s)	132, 162, 630
BsaHI	GRCGYC	1 cut(s)	286
BsaJI	CCNNGG	4 cut(s)	294, 295, 462, 463
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
BseBI	CCWGG	5 cut(s)	296, 324, 464, 492, 660
BseDI	CCNNGG	4 cut(s)	294, 295, 462, 463
BseGI	GGATG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	178, 340, 508
BshFI	GGCC	3 cut(s)	222, 384, 552
BsiSI	CCGG	3 cut(s)	132, 162, 630
BslFI	GGGAC	2 cut(s)	312, 480
BsmFI	GGGAC	2 cut(s)	312, 480
BsnI	GGCC	3 cut(s)	222, 384, 552
Bsp1286I	GDGCHC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	644
BspANI	GGCC	3 cut(s)	222, 384, 552
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	300
BssECI	CCNNGG	4 cut(s)	294, 295, 462, 463
BssNI	GRCGYC	1 cut(s)	286
Bst2UI	CCWGG	5 cut(s)	296, 324, 464, 492, 660
Bst4CI	ACNGT	2 cut(s)	394, 562
BstACI	GRCGYC	1 cut(s)	286
BstC8I	GCNNGC	5 cut(s)	59, 76, 220, 382, 550
BstDEI	CTNAG	3 cut(s)	69, 330, 498
BstF5I	GGATG	1 cut(s)	103
BstNI	CCWGG	5 cut(s)	296, 324, 464, 492, 660
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	8 cut(s)	130, 160, 294, 322, 462, 490, 628, 658
BstSFI	CTRYAG	2 cut(s)	393, 561
BstSLI	GKGCMC	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	178, 340, 508
BsuRI	GGCC	3 cut(s)	222, 384, 552
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	390, 558
Cac8I	GCNNGC	5 cut(s)	59, 76, 220, 382, 550
Cfr13I	GGNCC	5 cut(s)	164, 299, 326, 494, 635
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	618
CviAII	CATG	4 cut(s)	58, 89, 188, 350
CviJI	RGCY	9 cut(s)	74, 119, 222, 334, 384, 456, 502, 552, 670
CviKI_1	RGCY	9 cut(s)	74, 119, 222, 334, 384, 456, 502, 552, 670
CviQI	GTAC	1 cut(s)	618
DdeI	CTNAG	3 cut(s)	69, 330, 498
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	633
Eco47I	GGWCC	5 cut(s)	164, 299, 326, 494, 635
EcoRII	CCWGG	5 cut(s)	294, 322, 462, 490, 658
FaeI	CATG	4 cut(s)	61, 92, 191, 353
FaqI	GGGAC	2 cut(s)	312, 480
FatI	CATG	4 cut(s)	57, 88, 187, 349
Fnu4HI	GCNGC	3 cut(s)	192, 354, 522
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	3 cut(s)	192, 354, 522
FspBI	CTAG	4 cut(s)	180, 342, 510, 678
GluI	GCNGC	3 cut(s)	192, 354, 522
HaeIII	GGCC	3 cut(s)	222, 384, 552
HapII	CCGG	3 cut(s)	132, 162, 630
HgaI	GACGC	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	4 cut(s)	61, 92, 191, 353
HinfI	GANTC	5 cut(s)	172, 266, 304, 434, 602
HpaII	CCGG	3 cut(s)	132, 162, 630
Hpy166II	GTNNAC	3 cut(s)	137, 284, 635
Hpy188I	TCNGA	2 cut(s)	23, 70
Hpy8I	GTNNAC	3 cut(s)	137, 284, 635
Hpy99I	CGWCG	2 cut(s)	112, 241
HpyAV	CCTTC	2 cut(s)	109, 607
HpyCH4III	ACNGT	2 cut(s)	394, 562
HpyCH4IV	ACGT	3 cut(s)	156, 318, 486
HpyCH4V	TGCA	8 cut(s)	61, 88, 194, 218, 356, 380, 524, 548
HpyF3I	CTNAG	3 cut(s)	69, 330, 498
HpySE526I	ACGT	3 cut(s)	156, 318, 486
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	4 cut(s)	61, 92, 191, 353
Lsp1109I	GCAGC	3 cut(s)	178, 340, 508
MaeI	CTAG	4 cut(s)	180, 342, 510, 678
MaeII	ACGT	3 cut(s)	156, 318, 486
MaeIII	GTNAC	2 cut(s)	25, 146
MboII	GAAGA	5 cut(s)	116, 124, 253, 421, 589
MfeI	CAATTG	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	1 cut(s)	62
MlyI	GAGTC	4 cut(s)	166, 275, 443, 611
MseI	TTAA	8 cut(s)	12, 201, 260, 363, 428, 531, 596, 702
MslI	CAYNNNNRTG	4 cut(s)	56, 155, 317, 485
MspI	CCGG	3 cut(s)	132, 162, 630
MspR9I	CCNGG	8 cut(s)	132, 162, 296, 324, 464, 492, 630, 660
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	5 cut(s)	296, 324, 464, 492, 660
NciI	CCSGG	3 cut(s)	132, 162, 630
NlaIII	CATG	4 cut(s)	61, 92, 191, 353
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	3 cut(s)	155, 317, 485
PaeI	GCATGC	1 cut(s)	61
PasI	CCCWGGG	2 cut(s)	295, 463
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	193, 355, 523
PleI	GAGTC	4 cut(s)	166, 274, 442, 610
PpsI	GAGTC	4 cut(s)	166, 274, 442, 610
Psp6I	CCWGG	5 cut(s)	294, 322, 462, 490, 658
PspGI	CCWGG	5 cut(s)	294, 322, 462, 490, 658
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	5 cut(s)	164, 299, 326, 494, 635
RsaI	GTAC	1 cut(s)	619
RsaNI	GTAC	1 cut(s)	618
RseI	CAYNNNNRTG	4 cut(s)	56, 155, 317, 485
SaqAI	TTAA	8 cut(s)	12, 201, 260, 363, 428, 531, 596, 702
SatI	GCNGC	3 cut(s)	192, 354, 522
Sau96I	GGNCC	5 cut(s)	164, 299, 326, 494, 635
SchI	GAGTC	4 cut(s)	166, 275, 443, 611
ScrFI	CCNGG	8 cut(s)	132, 162, 296, 324, 464, 492, 630, 660
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	7 cut(s)	159, 283, 321, 405, 451, 489, 640
SfcI	CTRYAG	2 cut(s)	393, 561
SinI	GGWCC	5 cut(s)	164, 299, 326, 494, 635
SmiMI	CAYNNNNRTG	4 cut(s)	56, 155, 317, 485
SpeI	ACTAGT	3 cut(s)	179, 341, 509
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	1 cut(s)	644
SspMI	CTAG	4 cut(s)	180, 342, 510, 678
StyD4I	CCNGG	8 cut(s)	130, 160, 294, 322, 462, 490, 628, 658
TaaI	ACNGT	2 cut(s)	394, 562
TaiI	ACGT	3 cut(s)	159, 321, 489
TaqI	TCGA	5 cut(s)	107, 236, 269, 437, 605
TaqII	GACCGA	1 cut(s)	316
TasI	AATT	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	8 cut(s)	12, 201, 260, 363, 428, 531, 596, 702
Tru9I	TTAA	8 cut(s)	12, 201, 260, 363, 428, 531, 596, 702
TscAI	CASTG	2 cut(s)	397, 565
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	3 cut(s)	191, 353, 521
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	40, 114
TspRI	CASTG	2 cut(s)	397, 565
VpaK11BI	GGWCC	5 cut(s)	164, 299, 326, 494, 635
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	4 cut(s)	180, 342, 510, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.