Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002148

Physical Location & Seq

Genomic Coordinates Reverse (-)

55261338 .. 55262219

Gene Structure 882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG322000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGTGTTCTTAATGTTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGACGAGGACGAAAACTTGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACCTAATGGTCACACCAACGTGCCTGGTCCTGCGACTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTGCTACAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTTCCCAGGGACCTAATGGTAACACCAACGTGCCTGGTCCTGCGACTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACTGCTACAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTTCCCAGGGACCTAATGGTAACACCAACGTGCCTGGTCCTGCGACTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTTCCCAGGGACCTAATGGTAACACCAACGTGCCTGGTCCTGCGACTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACTTGACGAAGAACAAACTTTTTGTTTTAATGGAGTCGAAGCAGAGGGGTATTCCCCCTTCCGGTGGACCTAATCCGCCCACCAACAAGCCTGGTCATAAGCCTCCTGCTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

30.63

Weight (kDa)

10.53

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22100 FvH4_2g22120
pyrus_communis	pycom11g21110
rosa_laevigata	RLG00000012287 RLG00000012305 RLG00000012335 RLG00000013934
rosa_multiflora	Rmu_ssc0000422.1_g000045
rosa_roxburghii	Rroxscaffold_7G00177800
rosa_rugosa	Rorug06G0036100 Rorug06G0039200 Rorug06G0197400 Rorug06G0199900 Rorug06G0203300 Rorug06G0205100
rosa_samantha	Rh3AG160500 Rh3BG185000 Rh3CG175500 Rh3DG189700 Rh5AG111800 Rh5AG112000 Rh5DG107900 Rh6AG158500 Rh6AG311300 Rh6AG314400 Rh6AG316800 Rh6BG153800 Rh6BG160700 Rh6BG161400 Rh6BG162500 Rh6BG162700 Rh6BG317800 Rh6BG322000 Rh6CG155900 Rh6CG324900 Rh6CG328200 Rh6CG329800 Rh6DG138800 Rh6DG146100 Rh6DG148200 Rh6DG148500 Rh6DG310600 Rh6DG313900 Rh6DG315200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	135
AciI	CCGC	1 cut(s)	809
AcyI	GRCGYC	3 cut(s)	283, 451, 619
AgsI	TTSAA	1 cut(s)	861
AhlI	ACTAGT	4 cut(s)	170, 338, 506, 674
AjnI	CCWGG	8 cut(s)	151, 291, 319, 459, 487, 627, 655, 823
AleI	CACNNNNGTG	4 cut(s)	146, 314, 482, 650
AoxI	GGCC	4 cut(s)	211, 379, 547, 715
ApeKI	GCWGC	5 cut(s)	182, 350, 518, 686, 854
AspS9I	GGNCC	9 cut(s)	128, 155, 296, 323, 464, 491, 632, 659, 800
AsuC2I	CCSGG	1 cut(s)	123
AvaII	GGWCC	9 cut(s)	128, 155, 296, 323, 464, 491, 632, 659, 800
BarI	GAAGNNNNNNTAC	2 cut(s)	775, 807
BbvI	GCAGC	5 cut(s)	169, 337, 505, 673, 841
BciT130I	CCWGG	8 cut(s)	153, 293, 321, 461, 489, 629, 657, 825
BcnI	CCSGG	1 cut(s)	123
BcuI	ACTAGT	4 cut(s)	170, 338, 506, 674
BfaI	CTAG	5 cut(s)	171, 339, 507, 675, 843
BfmI	CTRYAG	4 cut(s)	222, 390, 558, 726
BisI	GCNGC	5 cut(s)	183, 351, 519, 687, 855
BlsI	GCNGC	5 cut(s)	184, 352, 520, 688, 856
Bme1390I	CCNGG	9 cut(s)	123, 153, 293, 321, 461, 489, 629, 657, 825
Bme18I	GGWCC	9 cut(s)	128, 155, 296, 323, 464, 491, 632, 659, 800
BmgT120I	GGNCC	9 cut(s)	128, 155, 296, 323, 464, 491, 632, 659, 800
BmiI	GGNNCC	3 cut(s)	297, 465, 633
BmrFI	CCNGG	9 cut(s)	123, 153, 293, 321, 461, 489, 629, 657, 825
BpuMI	CCSGG	1 cut(s)	123
BsaHI	GRCGYC	3 cut(s)	283, 451, 619
BsaJI	CCNNGG	6 cut(s)	291, 292, 459, 460, 627, 628
BsaWI	WCCGGW	1 cut(s)	794
BseBI	CCWGG	8 cut(s)	153, 293, 321, 461, 489, 629, 657, 825
BseDI	CCNNGG	6 cut(s)	291, 292, 459, 460, 627, 628
BseMII	CTCAG	1 cut(s)	51
BseXI	GCAGC	5 cut(s)	169, 337, 505, 673, 841
BshFI	GGCC	4 cut(s)	213, 381, 549, 717
BsiSI	CCGG	2 cut(s)	123, 795
BslFI	GGGAC	3 cut(s)	309, 477, 645
BsmFI	GGGAC	3 cut(s)	309, 477, 645
BsnI	GGCC	4 cut(s)	213, 381, 549, 717
BspACI	CCGC	1 cut(s)	809
BspANI	GGCC	4 cut(s)	213, 381, 549, 717
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	3 cut(s)	297, 465, 633
BssECI	CCNNGG	6 cut(s)	291, 292, 459, 460, 627, 628
BssNI	GRCGYC	3 cut(s)	283, 451, 619
Bst2UI	CCWGG	8 cut(s)	153, 293, 321, 461, 489, 629, 657, 825
Bst4CI	ACNGT	2 cut(s)	559, 727
BstACI	GRCGYC	3 cut(s)	283, 451, 619
BstC8I	GCNNGC	6 cut(s)	50, 67, 211, 379, 547, 715
BstDEI	CTNAG	1 cut(s)	60
BstNI	CCWGG	8 cut(s)	153, 293, 321, 461, 489, 629, 657, 825
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	9 cut(s)	121, 151, 291, 319, 459, 487, 627, 655, 823
BstSFI	CTRYAG	4 cut(s)	222, 390, 558, 726
BstV1I	GCAGC	5 cut(s)	169, 337, 505, 673, 841
BsuRI	GGCC	4 cut(s)	213, 381, 549, 717
BtsI	GCAGTG	2 cut(s)	216, 384
BtsIMutI	CAGTG	4 cut(s)	216, 384, 555, 723
Cac8I	GCNNGC	6 cut(s)	50, 67, 211, 379, 547, 715
Cfr13I	GGNCC	9 cut(s)	128, 155, 296, 323, 464, 491, 632, 659, 800
CseI	GACGC	3 cut(s)	291, 459, 627
CviAII	CATG	7 cut(s)	49, 80, 179, 347, 515, 683, 851
CviJI	RGCY	8 cut(s)	65, 110, 213, 381, 549, 717, 823, 835
CviKI_1	RGCY	8 cut(s)	65, 110, 213, 381, 549, 717, 823, 835
DdeI	CTNAG	1 cut(s)	60
DrdI	GACNNNNNNGTC	1 cut(s)	135
DseDI	GACNNNNNNGTC	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	798
Eco47I	GGWCC	9 cut(s)	128, 155, 296, 323, 464, 491, 632, 659, 800
EcoO109I	RGGNCCY	3 cut(s)	296, 464, 632
EcoRII	CCWGG	8 cut(s)	151, 291, 319, 459, 487, 627, 655, 823
FaeI	CATG	7 cut(s)	52, 83, 182, 350, 518, 686, 854
FaiI	YATR	9 cut(s)	44, 50, 81, 180, 348, 516, 684, 831, 852
FaqI	GGGAC	3 cut(s)	309, 477, 645
FatI	CATG	7 cut(s)	48, 79, 178, 346, 514, 682, 850
Fnu4HI	GCNGC	5 cut(s)	183, 351, 519, 687, 855
Fsp4HI	GCNGC	5 cut(s)	183, 351, 519, 687, 855
FspBI	CTAG	5 cut(s)	171, 339, 507, 675, 843
GluI	GCNGC	5 cut(s)	183, 351, 519, 687, 855
HaeIII	GGCC	4 cut(s)	213, 381, 549, 717
HapII	CCGG	2 cut(s)	123, 795
HgaI	GACGC	3 cut(s)	291, 459, 627
Hin1I	GRCGYC	3 cut(s)	283, 451, 619
Hin1II	CATG	7 cut(s)	52, 83, 182, 350, 518, 686, 854
HinfI	GANTC	8 cut(s)	163, 263, 331, 431, 499, 599, 667, 767
HpaII	CCGG	2 cut(s)	123, 795
Hpy166II	GTNNAC	5 cut(s)	128, 281, 449, 617, 800
Hpy188I	TCNGA	1 cut(s)	61
Hpy8I	GTNNAC	5 cut(s)	128, 281, 449, 617, 800
HpyAV	CCTTC	5 cut(s)	100, 297, 465, 633, 801
HpyCH4III	ACNGT	2 cut(s)	559, 727
HpyCH4IV	ACGT	4 cut(s)	147, 315, 483, 651
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	4 cut(s)	147, 315, 483, 651
Hsp92I	GRCGYC	3 cut(s)	283, 451, 619
Hsp92II	CATG	7 cut(s)	52, 83, 182, 350, 518, 686, 854
Lsp1109I	GCAGC	5 cut(s)	169, 337, 505, 673, 841
MaeI	CTAG	5 cut(s)	171, 339, 507, 675, 843
MaeII	ACGT	4 cut(s)	147, 315, 483, 651
MaeIII	GTNAC	5 cut(s)	16, 137, 305, 473, 641
MboII	GAAGA	6 cut(s)	107, 115, 250, 418, 586, 754
MfeI	CAATTG	1 cut(s)	53
MluCI	AATT	2 cut(s)	53, 877
MlyI	GAGTC	8 cut(s)	157, 272, 325, 440, 493, 608, 661, 776
MnlI	CCTC	5 cut(s)	55, 79, 129, 771, 846
MslI	CAYNNNNRTG	5 cut(s)	47, 146, 314, 482, 650
MspI	CCGG	2 cut(s)	123, 795
MspR9I	CCNGG	9 cut(s)	123, 153, 293, 321, 461, 489, 629, 657, 825
MunI	CAATTG	1 cut(s)	53
MvaI	CCWGG	8 cut(s)	153, 293, 321, 461, 489, 629, 657, 825
NciI	CCSGG	1 cut(s)	123
NlaIII	CATG	7 cut(s)	52, 83, 182, 350, 518, 686, 854
NlaIV	GGNNCC	3 cut(s)	297, 465, 633
NmuCI	GTSAC	1 cut(s)	137
NspI	RCATGY	1 cut(s)	52
OliI	CACNNNNGTG	4 cut(s)	146, 314, 482, 650
PaeI	GCATGC	1 cut(s)	52
PasI	CCCWGGG	3 cut(s)	292, 460, 628
PkrI	GCNGC	5 cut(s)	184, 352, 520, 688, 856
PleI	GAGTC	8 cut(s)	157, 271, 325, 439, 493, 607, 661, 775
PpsI	GAGTC	8 cut(s)	157, 271, 325, 439, 493, 607, 661, 775
PpuMI	RGGWCCY	3 cut(s)	296, 464, 632
Psp5II	RGGWCCY	3 cut(s)	296, 464, 632
Psp6I	CCWGG	8 cut(s)	151, 291, 319, 459, 487, 627, 655, 823
PspGI	CCWGG	8 cut(s)	151, 291, 319, 459, 487, 627, 655, 823
PspN4I	GGNNCC	3 cut(s)	297, 465, 633
PspPI	GGNCC	9 cut(s)	128, 155, 296, 323, 464, 491, 632, 659, 800
PspPPI	RGGWCCY	3 cut(s)	296, 464, 632
RseI	CAYNNNNRTG	5 cut(s)	47, 146, 314, 482, 650
SatI	GCNGC	5 cut(s)	183, 351, 519, 687, 855
Sau96I	GGNCC	9 cut(s)	128, 155, 296, 323, 464, 491, 632, 659, 800
SchI	GAGTC	8 cut(s)	157, 272, 325, 440, 493, 608, 661, 776
ScrFI	CCNGG	9 cut(s)	123, 153, 293, 321, 461, 489, 629, 657, 825
SfcI	CTRYAG	4 cut(s)	222, 390, 558, 726
SinI	GGWCC	9 cut(s)	128, 155, 296, 323, 464, 491, 632, 659, 800
SmiMI	CAYNNNNRTG	5 cut(s)	47, 146, 314, 482, 650
SpeI	ACTAGT	4 cut(s)	170, 338, 506, 674
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	53, 877
SsiI	CCGC	1 cut(s)	809
SspMI	CTAG	5 cut(s)	171, 339, 507, 675, 843
StyD4I	CCNGG	9 cut(s)	121, 151, 291, 319, 459, 487, 627, 655, 823
TaaI	ACNGT	2 cut(s)	559, 727
TaiI	ACGT	4 cut(s)	150, 318, 486, 654
TaqI	TCGA	4 cut(s)	266, 434, 602, 770
TasI	AATT	2 cut(s)	53, 877
TscAI	CASTG	4 cut(s)	223, 391, 562, 730
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	5 cut(s)	182, 350, 518, 686, 854
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	4 cut(s)	223, 391, 562, 730
VpaK11BI	GGWCC	9 cut(s)	128, 155, 296, 323, 464, 491, 632, 659, 800
XceI	RCATGY	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	3 cut(s)	299, 467, 635
XspI	CTAG	5 cut(s)	171, 339, 507, 675, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.