Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012401

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Forward (+)

72161 .. 73545

Gene Structure 1385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGATATGTTATTTTTGTTTAGGTTGGAGTAATCATTTTTTGTCGAAGCGAAAGTACCATATGATAATACCAATGGATGATGAGTGGCATAAGCCTCTGAATGACAGTATCTTTGATCTTCCGACCCATCTGTTACACGGGTTGATTCACTGGGGTTCTAAGTATCTCTATGGGAGACAGATTATGGATCTTTGGGACAGAATTTGCACAAATCTTCGAACCAGGAAAATCACTGTTGAGAATCTATCAAAGAAGCGGTCTATGGACCTTCGTCTTCTCCATGGCGTTGCTTACGGACACCCTTGGTTTGGTAGATGGGGAGGTTCTATTCTTAGCTCATTACAACTTGAAAGGATCATCCAGGATTTTAGTGATACGGACCAGTGTGAAGAACTGAAGCAAATAGTTCGTCATTACAGAAATTTGAGTGAAACACAGTTGATCACAATCAAGGATCTTCTTAGGTTTATGCTGACTGTCAAGTCTAGTATTCCTGCACAGAAGAAATCATTGATGGCTACTGCTGCATTTTCATCATCCACTGCAAAACCTGCAACCAGAGCAGCCCTCCAGATCAAGCACCCGATGAAGGAAAAGTCTGTGAGTTATAGGAAGTTCACTACTGTTATTACTCACATGGATAGCAGATGGCCTAAAAGAAGACTAGAGTTTGCAGCGGAAGTGATTGTGAACGCATTGCAAGAAAAGAAAGAGAGAGACTTCAGTCATGGTGGGATGACCCGGCAAGATGTGCGAGATGCAGCTCGGTTACATATTGGAGATACAGGTCTGTTGGATTATGTGTTGAAATCACTGAACAATGTGATTGTTGGGAATCACATTGTCTGCCGCGCAGTGAACCCAACCACTCGGATTTTGGAGTACACGGTTCATGATCTTGCAGATGGGGTTAAGGTCTCTGAACCTGAGAAAGAGATAGTTCCTCAGTCCCTTTCATCAGCAGCTCTAGTTCCTGGAGTTGATGTTAGCAATGATGCGCTTTATCTGTATGAGCATGTGCTGCTAGGATACCCAGAATCAGAGGATGAGGAAGAGCAGTGGTTGACAATCATTTGCCAACTCTCTCCTTTTCCTTTTTCTCTCAAAAAACAAGGCTCGCTCTCTACTTCTGTCAATGGCAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

383

Amino Acids

43.76

Weight (kDa)

8.74

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	216 - 299	3.1e-35	Winged helix-turn-helix domain in plant reproductive proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	481
Acc36I	ACCTGC	1 cut(s)	559
AccII	CGCG	1 cut(s)	852
AciI	CCGC	3 cut(s)	256, 677, 850
AclWI	GGATC	3 cut(s)	195, 362, 462
AcsI	RAATTY	2 cut(s)	201, 421
AcuI	CTGAAG	2 cut(s)	416, 706
AfaI	GTAC	2 cut(s)	56, 884
AfiI	CCNNNNNNNGG	2 cut(s)	308, 589
AgsI	TTSAA	2 cut(s)	350, 808
AjnI	CCWGG	3 cut(s)	221, 360, 973
AluBI	AGCT	3 cut(s)	336, 764, 965
AluI	AGCT	3 cut(s)	336, 764, 965
Alw26I	GTCTC	3 cut(s)	169, 711, 922
AlwI	GGATC	3 cut(s)	195, 362, 462
AoxI	GGCC	1 cut(s)	650
ApeKI	GCWGC	6 cut(s)	524, 563, 674, 761, 962, 1021
ApoI	RAATTY	2 cut(s)	201, 421
ArsI	GACNNNNNNTTYG	6 cut(s)	95, 127, 242, 274, 394, 426
AspLEI	GCGC	2 cut(s)	854, 1000
AspS9I	GGNCC	2 cut(s)	265, 379
AsuC2I	CCSGG	1 cut(s)	742
AsuII	TTCGAA	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	265, 379
BarI	GAAGNNNNNNTAC	2 cut(s)	38, 70
BbsI	GAAGAC	2 cut(s)	266, 667
BbvI	GCAGC	6 cut(s)	511, 575, 686, 773, 974, 1008
BccI	CCATC	5 cut(s)	135, 309, 508, 642, 899
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	3 cut(s)	223, 362, 975
BciVI	GTATCC	1 cut(s)	1022
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	1 cut(s)	742
BcoDI	GTCTC	3 cut(s)	169, 711, 922
BfaI	CTAG	4 cut(s)	486, 665, 968, 1025
BfuAI	ACCTGC	1 cut(s)	559
BfuI	GTATCC	1 cut(s)	1022
BisI	GCNGC	7 cut(s)	525, 564, 675, 762, 850, 963, 1022
BlsI	GCNGC	7 cut(s)	526, 565, 676, 763, 851, 964, 1023
Bme1390I	CCNGG	4 cut(s)	223, 362, 742, 975
Bme18I	GGWCC	2 cut(s)	265, 379
BmgT120I	GGNCC	2 cut(s)	265, 379
BmrFI	CCNGG	4 cut(s)	223, 362, 742, 975
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	748, 985
BmuI	ACTGGG	1 cut(s)	160
BoxI	GACNNNNGTC	2 cut(s)	270, 723
BpiI	GAAGAC	2 cut(s)	266, 667
BplI	GAGNNNNNCTC	2 cut(s)	552, 584
BpmI	CTGGAG	2 cut(s)	554, 996
Bpu14I	TTCGAA	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	742
BsaBI	GATNNNNATC	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	922
BsaJI	CCNNGG	2 cut(s)	280, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	969, 999
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 589
Bse1I	ACTGG	2 cut(s)	155, 382
Bse3DI	GCAATG	2 cut(s)	695, 997
Bse8I	GATNNNNATC	1 cut(s)	446
BseBI	CCWGG	3 cut(s)	223, 362, 975
BseDI	CCNNGG	2 cut(s)	280, 302
BseGI	GGATG	5 cut(s)	82, 357, 536, 741, 1051
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	2 cut(s)	308, 589
BseMI	GCAATG	2 cut(s)	695, 997
BseMII	CTCAG	2 cut(s)	918, 959
BseNI	ACTGG	2 cut(s)	155, 382
BseXI	GCAGC	6 cut(s)	511, 575, 686, 773, 974, 1008
BsgI	GTGCAG	1 cut(s)	480
Bsh1236I	CGCG	1 cut(s)	852
BshFI	GGCC	1 cut(s)	652
BsiSI	CCGG	1 cut(s)	742
BslFI	GGGAC	2 cut(s)	209, 934
BslI	CCNNNNNNNGG	2 cut(s)	308, 589
BsmAI	GTCTC	3 cut(s)	169, 711, 922
BsmFI	GGGAC	2 cut(s)	209, 934
BsnI	GGCC	1 cut(s)	652
Bso31I	GGTCTC	1 cut(s)	922
Bsp119I	TTCGAA	1 cut(s)	217
Bsp143I	GATC	7 cut(s)	115, 187, 354, 441, 454, 573, 895
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	3 cut(s)	256, 677, 850
BspANI	GGCC	1 cut(s)	652
BspCNI	CTCAG	2 cut(s)	919, 958
BspFNI	CGCG	1 cut(s)	852
BspHI	TCATGA	1 cut(s)	892
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	3 cut(s)	195, 362, 462
BspQI	GCTCTTC	1 cut(s)	1047
BspT104I	TTCGAA	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	922
BsrDI	GCAATG	2 cut(s)	695, 997
BsrI	ACTGG	2 cut(s)	155, 382
BssECI	CCNNGG	2 cut(s)	280, 302
BssMI	GATC	7 cut(s)	115, 187, 354, 441, 454, 573, 895
BssT1I	CCWWGG	2 cut(s)	280, 302
Bst2UI	CCWGG	3 cut(s)	223, 362, 975
Bst4CI	ACNGT	6 cut(s)	107, 235, 438, 478, 625, 889
Bst6I	CTCTTC	1 cut(s)	1047
BstAPI	GCANNNNNTGC	3 cut(s)	551, 751, 1021
BstBI	TTCGAA	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	1118
BstDEI	CTNAG	5 cut(s)	159, 332, 461, 927, 945
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	5 cut(s)	82, 357, 536, 741, 1051
BstFNI	CGCG	1 cut(s)	852
BstHHI	GCGC	2 cut(s)	854, 1000
BstKTI	GATC	7 cut(s)	118, 190, 357, 444, 457, 576, 898
BstMAI	GTCTC	3 cut(s)	169, 711, 922
BstMBI	GATC	7 cut(s)	115, 187, 354, 441, 454, 573, 895
BstMWI	GCNNNNNNNGC	5 cut(s)	524, 551, 560, 751, 1021
BstNI	CCWGG	3 cut(s)	223, 362, 975
BstNSI	RCATGY	1 cut(s)	1019
BstPAI	GACNNNNGTC	2 cut(s)	270, 723
BstSCI	CCNGG	4 cut(s)	221, 360, 740, 973
BstUI	CGCG	1 cut(s)	852
BstV1I	GCAGC	6 cut(s)	511, 575, 686, 773, 974, 1008
BstV2I	GAAGAC	2 cut(s)	266, 667
BstX2I	RGATCY	2 cut(s)	187, 454
BstYI	RGATCY	2 cut(s)	187, 454
BsuI	GTATCC	1 cut(s)	1022
BsuRI	GGCC	1 cut(s)	652
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	5 cut(s)	82, 357, 536, 741, 1051
BtsI	GCAGTG	3 cut(s)	540, 861, 1064
BtsIMutI	CAGTG	7 cut(s)	148, 231, 389, 540, 812, 861, 1064
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	1 cut(s)	1118
CciI	TCATGA	1 cut(s)	892
CfoI	GCGC	2 cut(s)	854, 1000
Cfr13I	GGNCC	2 cut(s)	265, 379
Csp6I	GTAC	2 cut(s)	55, 883
CviAII	CATG	5 cut(s)	281, 637, 728, 893, 1016
CviJI	RGCY	8 cut(s)	94, 336, 518, 566, 652, 764, 965, 1116
CviKI_1	RGCY	8 cut(s)	94, 336, 518, 566, 652, 764, 965, 1116
CviQI	GTAC	2 cut(s)	55, 883
DdeI	CTNAG	5 cut(s)	159, 332, 461, 927, 945
DpnI	GATC	7 cut(s)	117, 189, 356, 443, 456, 575, 897
DpnII	GATC	7 cut(s)	115, 187, 354, 441, 454, 573, 895
DrdI	GACNNNNNNGTC	1 cut(s)	481
DseDI	GACNNNNNNGTC	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	1047
EarI	CTCTTC	1 cut(s)	1047
Eco130I	CCWWGG	2 cut(s)	280, 302
Eco31I	GGTCTC	1 cut(s)	922
Eco47I	GGWCC	2 cut(s)	265, 379
Eco57I	CTGAAG	2 cut(s)	416, 706
EcoRII	CCWGG	3 cut(s)	221, 360, 973
EcoT14I	CCWWGG	2 cut(s)	280, 302
ErhI	CCWWGG	2 cut(s)	280, 302
FaeI	CATG	5 cut(s)	284, 640, 731, 896, 1019
FaqI	GGGAC	2 cut(s)	209, 934
FatI	CATG	5 cut(s)	280, 636, 727, 892, 1015
FauNDI	CATATG	1 cut(s)	60
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	7 cut(s)	525, 564, 675, 762, 850, 963, 1022
FokI	GGATG	5 cut(s)	89, 344, 523, 748, 1058
Fsp4HI	GCNGC	7 cut(s)	525, 564, 675, 762, 850, 963, 1022
FspBI	CTAG	4 cut(s)	486, 665, 968, 1025
GlaI	GCGC	2 cut(s)	853, 999
GluI	GCNGC	7 cut(s)	525, 564, 675, 762, 850, 963, 1022
GsuI	CTGGAG	2 cut(s)	554, 996
HaeIII	GGCC	1 cut(s)	652
HapII	CCGG	1 cut(s)	742
HhaI	GCGC	2 cut(s)	854, 1000
Hin1II	CATG	5 cut(s)	284, 640, 731, 896, 1019
Hin6I	GCGC	2 cut(s)	852, 998
HinP1I	GCGC	2 cut(s)	852, 998
HincII	GTYRAC	1 cut(s)	1065
HindII	GTYRAC	1 cut(s)	1065
HinfI	GANTC	4 cut(s)	145, 241, 835, 1037
HpaII	CCGG	1 cut(s)	742
Hpy166II	GTNNAC	5 cut(s)	618, 691, 859, 885, 1065
Hpy188I	TCNGA	5 cut(s)	99, 123, 873, 922, 1042
Hpy188III	TCNNGA	2 cut(s)	571, 893
Hpy8I	GTNNAC	5 cut(s)	618, 691, 859, 885, 1065
HpyAV	CCTTC	2 cut(s)	278, 583
HpyCH4III	ACNGT	6 cut(s)	107, 235, 438, 478, 625, 889
HpyCH4V	TGCA	9 cut(s)	207, 497, 527, 545, 554, 674, 700, 761, 902
HpyF10VI	GCNNNNNNNGC	5 cut(s)	524, 551, 560, 751, 1021
HpyF3I	CTNAG	5 cut(s)	159, 332, 461, 927, 945
Hsp92II	CATG	5 cut(s)	284, 640, 731, 896, 1019
HspAI	GCGC	2 cut(s)	852, 998
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	7 cut(s)	115, 187, 354, 441, 454, 573, 895
LguI	GCTCTTC	1 cut(s)	1047
Lsp1109I	GCAGC	6 cut(s)	511, 575, 686, 773, 974, 1008
LweI	GCATC	2 cut(s)	748, 985
MaeI	CTAG	4 cut(s)	486, 665, 968, 1025
MaeIII	GTNAC	2 cut(s)	132, 768
MalI	GATC	7 cut(s)	117, 189, 356, 443, 456, 575, 897
MboI	GATC	7 cut(s)	115, 187, 354, 441, 454, 573, 895
MboII	GAAGA	8 cut(s)	110, 206, 266, 401, 449, 514, 672, 1064
MflI	RGATCY	2 cut(s)	187, 454
MluCI	AATT	2 cut(s)	201, 421
MmeI	TCCRAC	3 cut(s)	5, 146, 774
MnlI	CCTC	6 cut(s)	105, 314, 578, 954, 1036, 1042
MseI	TTAA	1 cut(s)	912
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	1 cut(s)	742
MspR9I	CCNGG	4 cut(s)	223, 362, 742, 975
MvaI	CCWGG	3 cut(s)	223, 362, 975
MvnI	CGCG	1 cut(s)	852
MwoI	GCNNNNNNNGC	5 cut(s)	524, 551, 560, 751, 1021
NciI	CCSGG	1 cut(s)	742
NcoI	CCATGG	1 cut(s)	280
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	7 cut(s)	115, 187, 354, 441, 454, 573, 895
NlaIII	CATG	5 cut(s)	284, 640, 731, 896, 1019
NspI	RCATGY	1 cut(s)	1019
NspV	TTCGAA	1 cut(s)	217
PagI	TCATGA	1 cut(s)	892
PciSI	GCTCTTC	1 cut(s)	1047
PfeI	GAWTC	4 cut(s)	145, 241, 835, 1037
PfoI	TCCNGGA	2 cut(s)	360, 973
PkrI	GCNGC	7 cut(s)	526, 565, 676, 763, 851, 964, 1023
PshAI	GACNNNNGTC	2 cut(s)	270, 723
Psp6I	CCWGG	3 cut(s)	221, 360, 973
PspGI	CCWGG	3 cut(s)	221, 360, 973
PspPI	GGNCC	2 cut(s)	265, 379
PsuI	RGATCY	2 cut(s)	187, 454
RsaI	GTAC	2 cut(s)	56, 884
RsaNI	GTAC	2 cut(s)	55, 883
SapI	GCTCTTC	1 cut(s)	1047
SaqAI	TTAA	1 cut(s)	912
SatI	GCNGC	7 cut(s)	525, 564, 675, 762, 850, 963, 1022
Sau3AI	GATC	7 cut(s)	115, 187, 354, 441, 454, 573, 895
Sau96I	GGNCC	2 cut(s)	265, 379
ScrFI	CCNGG	4 cut(s)	223, 362, 742, 975
SfaNI	GCATC	2 cut(s)	748, 985
SfuI	TTCGAA	1 cut(s)	217
SinI	GGWCC	2 cut(s)	265, 379
Sse9I	AATT	2 cut(s)	201, 421
SsiI	CCGC	3 cut(s)	256, 677, 850
SspMI	CTAG	4 cut(s)	486, 665, 968, 1025
StyD4I	CCNGG	4 cut(s)	221, 360, 740, 973
StyI	CCWWGG	2 cut(s)	280, 302
TaaI	ACNGT	6 cut(s)	107, 235, 438, 478, 625, 889
TaqI	TCGA	2 cut(s)	44, 217
TasI	AATT	2 cut(s)	201, 421
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	1 cut(s)	852
TfiI	GAWTC	4 cut(s)	145, 241, 835, 1037
Tru1I	TTAA	1 cut(s)	912
Tru9I	TTAA	1 cut(s)	912
TscAI	CASTG	7 cut(s)	155, 238, 389, 547, 819, 861, 1064
TseI	GCWGC	6 cut(s)	524, 563, 674, 761, 962, 1021
TspDTI	ATGAA	4 cut(s)	522, 602, 881, 945
TspGWI	ACGGA	2 cut(s)	309, 392
TspRI	CASTG	7 cut(s)	155, 238, 389, 547, 819, 861, 1064
VpaK11BI	GGWCC	2 cut(s)	265, 379
XapI	RAATTY	2 cut(s)	201, 421
XceI	RCATGY	1 cut(s)	1019
XcmI	CCANNNNNNNNNTGG	1 cut(s)	874
XspI	CTAG	4 cut(s)	486, 665, 968, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.