pycom13g05030

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0003016
Physical Location & Seq
Reverse (-)
3366788 .. 3369207
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 891 bp
ATGGAAGACTTGTGGAAGCGAGCCAAGACCTTCGCCGAAGAAGCGGCCAAGAAGTCCCAAACCCTAACCACCTCCGCCAAGATCACCGACCTAGTCTCCGAAACCGCCAAGCGATCCCGCGAGTTCGCCGCCGAGGCGTCCAAGAAGGCCGACGAGATCAAGACGGCCGCGCTCAAGCAGGCCGATCAGATCAAGTCCCTCTCCGTCTCCGAGATCATTCCTCCCCAGCTCGCCTCGCTCTCGATCGTCAACTCCGCCTCCGCGTCCTCCGCCCCTGAGCCGCCCTCGCCGTCGGAGCTCAGGAAGTTCGGTGTCACCGACGATCTCAGAGATTTTGTCAAGGGACTCACTTCCGACACCTTCAAGCATTTTCCGGTCCAAGATGCGGCGGAGGAGGTCTCCGATGTGCCGACCACGACCTCGAATGTGAGGAAAGATCTGACGGAGTGGCAGGAGCGACATGCAACTTTGGTGCTCACTACTGTTAAGGAAATTTCAAGGCTGAGATATGAATTATGCCCGCGTGTTATGAAAGAAAGAATATTCTGGAAGATATATTTTACCCTTGTGAGCAGTCATGTGGCGCCATGTGAGAAGCAATACATGGAGGAATTGAAAGTCAAGGAAGCAGAGAAACTAAAAGATGATATTGTGAAGCCAACACCTGTGGTTGGAGTGACTGACAAAGCAGAAGGATCTGAAAAGAACACAAAGCCTTTAGTTTCGAAATCATCGTCAACTGAGCAGGACTTGGATAGTTTTCTTTTGGGTGATCTTGAAGACAGTGATGGGGCTCCAGATGATCGTGATGATGGTGATGGGAGCTTTGATGATGATTTTGACAAGATTGGCAATTCGGATGTTGAAGATGAGAAGCACGCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

297

Amino Acids

32.86

Weight (kDa)

4.94

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 147 - 193 8.3e-11 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 583
AccII CGCG 4 cut(s) 120, 170, 263, 523
AclWI GGATC 2 cut(s) 108, 703
AcoI YGGCCR 2 cut(s) 45, 165
AcsI RAATTY 1 cut(s) 492
AcyI GRCGYC 2 cut(s) 137, 584
AfiI CCNNNNNNNGG 2 cut(s) 385, 671
AgsI TTSAA 5 cut(s) 364, 498, 616, 779, 866
AluBI AGCT 3 cut(s) 229, 298, 825
AluI AGCT 3 cut(s) 229, 298, 825
Alw21I GWGCWC 2 cut(s) 300, 477
Alw26I GTCTC 3 cut(s) 100, 211, 403
AlwI GGATC 2 cut(s) 108, 703
AoxI GGCC 4 cut(s) 45, 147, 165, 180
ApoI RAATTY 1 cut(s) 492
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
AspLEI GCGC 2 cut(s) 172, 586
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 4 cut(s) 76, 307, 782, 827
AsuII TTCGAA 1 cut(s) 725
AvaII GGWCC 1 cut(s) 376
BanI GGYRCC 1 cut(s) 583
BanII GRGCYC 2 cut(s) 300, 796
BbsI GAAGAC 2 cut(s) 12, 786
Bbv12I GWGCWC 2 cut(s) 300, 477
BccI CCATC 3 cut(s) 782, 806, 812
BceAI ACGGC 2 cut(s) 180, 274
BcoDI GTCTC 3 cut(s) 100, 211, 403
BfaI CTAG 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 587
BglI GCCNNNNNGGC 1 cut(s) 134
BglII AGATCT 1 cut(s) 436
BisI GCNGC 5 cut(s) 45, 129, 168, 281, 387
BlsI GCNGC 5 cut(s) 46, 130, 169, 282, 388
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 585, 795
BmsI GCATC 1 cut(s) 373
BpiI GAAGAC 2 cut(s) 12, 786
BplI GAGNNNNNCTC 4 cut(s) 269, 301, 383, 415
BpmI CTGGAG 1 cut(s) 780
Bpu10I CCTNAGC 2 cut(s) 276, 299
Bpu14I TTCGAA 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 158
BsaHI GRCGYC 2 cut(s) 137, 584
BsaI GGTCTC 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 373
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 385, 671
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 865
BseLI CCNNNNNNNGG 2 cut(s) 385, 671
BseMII CTCAG 5 cut(s) 267, 313, 340, 494, 732
BseRI GAGGAG 1 cut(s) 407
BseX3I CGGCCG 1 cut(s) 165
BseYI CCCAGC 1 cut(s) 225
Bsh1236I CGCG 4 cut(s) 120, 170, 263, 523
Bsh1285I CGRYCG 2 cut(s) 168, 246
BshFI GGCC 4 cut(s) 47, 149, 167, 182
BshNI GGYRCC 1 cut(s) 583
BsiEI CGRYCG 2 cut(s) 168, 246
BsiHKAI GWGCWC 2 cut(s) 300, 477
BsiSI CCGG 1 cut(s) 374
BslFI GGGAC 3 cut(s) 40, 181, 357
BslI CCNNNNNNNGG 2 cut(s) 385, 671
BsmAI GTCTC 3 cut(s) 100, 211, 403
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 3 cut(s) 40, 181, 357
BsnI GGCC 4 cut(s) 47, 149, 167, 182
Bso31I GGTCTC 1 cut(s) 403
Bsp119I TTCGAA 1 cut(s) 725
Bsp1286I GDGCHC 3 cut(s) 300, 477, 796
BspANI GGCC 4 cut(s) 47, 149, 167, 182
BspCNI CTCAG 5 cut(s) 268, 312, 339, 495, 733
BspFNI CGCG 4 cut(s) 120, 170, 263, 523
BspLI GGNNCC 2 cut(s) 585, 795
BspPI GGATC 2 cut(s) 108, 703
BspT104I TTCGAA 1 cut(s) 725
BspT107I GGYRCC 1 cut(s) 583
BspTNI GGTCTC 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 132
BssNI GRCGYC 2 cut(s) 137, 584
Bst4CI ACNGT 2 cut(s) 484, 785
BstACI GRCGYC 2 cut(s) 137, 584
BstBI TTCGAA 1 cut(s) 725
BstC8I GCNNGC 5 cut(s) 21, 180, 231, 521, 879
BstDEI CTNAG 5 cut(s) 276, 299, 326, 503, 741
BstF5I GGATG 1 cut(s) 865
BstFNI CGCG 4 cut(s) 120, 170, 263, 523
BstH2I RGCGCY 1 cut(s) 587
BstHHI GCGC 2 cut(s) 172, 586
BstMAI GTCTC 3 cut(s) 100, 211, 403
BstMCI CGRYCG 2 cut(s) 168, 246
BstMWI GCNNNNNNNGC 6 cut(s) 41, 134, 235, 269, 286, 295
BstNSI RCATGY 1 cut(s) 464
BstUI CGCG 4 cut(s) 120, 170, 263, 523
BstV2I GAAGAC 2 cut(s) 12, 786
BstX2I RGATCY 2 cut(s) 436, 695
BstYI RGATCY 2 cut(s) 436, 695
BstZI CGGCCG 1 cut(s) 165
BsuRI GGCC 4 cut(s) 47, 149, 167, 182
BtsCI GGATG 1 cut(s) 865
BtsIMutI CAGTG 1 cut(s) 790
Cac8I GCNNGC 5 cut(s) 21, 180, 231, 521, 879
CfoI GCGC 2 cut(s) 172, 586
Cfr13I GGNCC 1 cut(s) 376
CseI GACGC 2 cut(s) 126, 252
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 4 cut(s) 461, 578, 588, 604
DdeI CTNAG 5 cut(s) 276, 299, 326, 503, 741
DinI GGCGCC 1 cut(s) 585
EaeI YGGCCR 2 cut(s) 45, 165
EagI CGGCCG 1 cut(s) 165
EciI GGCGGA 4 cut(s) 64, 244, 259, 404
Ecl136II GAGCTC 1 cut(s) 298
EclXI CGGCCG 1 cut(s) 165
Eco24I GRGCYC 2 cut(s) 300, 796
Eco31I GGTCTC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 376
Eco52I CGGCCG 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 298
EcoICRI GAGCTC 1 cut(s) 298
EcoT38I GRGCYC 2 cut(s) 300, 796
EgeI GGCGCC 1 cut(s) 585
EheI GGCGCC 1 cut(s) 585
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 4 cut(s) 464, 581, 591, 607
FaiI YATR 8 cut(s) 462, 510, 517, 530, 556, 579, 589, 605
FaqI GGGAC 3 cut(s) 40, 181, 357
FatI CATG 4 cut(s) 460, 577, 587, 603
FauI CCCGC 2 cut(s) 125, 528
Fnu4HI GCNGC 5 cut(s) 45, 129, 168, 281, 387
FokI GGATG 1 cut(s) 872
FriOI GRGCYC 2 cut(s) 300, 796
Fsp4HI GCNGC 5 cut(s) 45, 129, 168, 281, 387
FspBI CTAG 1 cut(s) 92
GlaI GCGC 2 cut(s) 171, 585
GluI GCNGC 5 cut(s) 45, 129, 168, 281, 387
GsaI CCCAGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 780
HaeII RGCGCY 1 cut(s) 587
HaeIII GGCC 4 cut(s) 47, 149, 167, 182
HapII CCGG 1 cut(s) 374
HgaI GACGC 2 cut(s) 126, 252
HhaI GCGC 2 cut(s) 172, 586
Hin1I GRCGYC 2 cut(s) 137, 584
Hin1II CATG 4 cut(s) 464, 581, 591, 607
Hin6I GCGC 2 cut(s) 170, 584
HinP1I GCGC 2 cut(s) 170, 584
HincII GTYRAC 2 cut(s) 250, 738
HindII GTYRAC 2 cut(s) 250, 738
HinfI GANTC 1 cut(s) 345
HpaII CCGG 1 cut(s) 374
HphI GGTGA 4 cut(s) 76, 307, 782, 827
Hpy166II GTNNAC 2 cut(s) 250, 738
Hpy188III TCNNGA 7 cut(s) 160, 241, 301, 547, 776, 797, 806
Hpy8I GTNNAC 2 cut(s) 250, 738
Hpy99I CGWCG 3 cut(s) 155, 295, 323
HpyAV CCTTC 4 cut(s) 40, 139, 370, 686
HpyCH4III ACNGT 2 cut(s) 484, 785
HpyCH4V TGCA 1 cut(s) 464
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 134, 235, 269, 286, 295
HpyF3I CTNAG 5 cut(s) 276, 299, 326, 503, 741
Hsp92I GRCGYC 2 cut(s) 137, 584
Hsp92II CATG 4 cut(s) 464, 581, 591, 607
HspAI GCGC 2 cut(s) 170, 584
KasI GGCGCC 1 cut(s) 583
LmnI GCTCC 4 cut(s) 295, 454, 799, 822
LweI GCATC 1 cut(s) 373
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 313, 676
MboII GAAGA 5 cut(s) 17, 50, 562, 791, 878
MflI RGATCY 2 cut(s) 436, 695
MhlI GDGCHC 3 cut(s) 300, 477, 796
MluCI AATT 4 cut(s) 492, 512, 611, 853
Mly113I GGCGCC 1 cut(s) 584
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 3 cut(s) 273, 378, 652
MseI TTAA 1 cut(s) 486
MspI CCGG 1 cut(s) 374
MvnI CGCG 4 cut(s) 120, 170, 263, 523
MwoI GCNNNNNNNGC 6 cut(s) 41, 134, 235, 269, 286, 295
NarI GGCGCC 1 cut(s) 584
NlaIII CATG 4 cut(s) 464, 581, 591, 607
NlaIV GGNNCC 2 cut(s) 585, 795
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 2 cut(s) 313, 676
NspI RCATGY 1 cut(s) 464
NspV TTCGAA 1 cut(s) 725
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 731
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 5 cut(s) 46, 130, 169, 282, 388
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 1 cut(s) 339
PluTI GGCGCC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 585, 795
PspPI GGNCC 1 cut(s) 376
PsuI RGATCY 2 cut(s) 436, 695
PsyI GACNNNGTC 1 cut(s) 92
PvuI CGATCG 1 cut(s) 246
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 5 cut(s) 45, 129, 168, 281, 387
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 1 cut(s) 339
SduI GDGCHC 3 cut(s) 300, 477, 796
SfaNI GCATC 1 cut(s) 373
SfoI GGCGCC 1 cut(s) 585
SfuI TTCGAA 1 cut(s) 725
SinI GGWCC 1 cut(s) 376
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 4 cut(s) 492, 512, 611, 853
SspDI GGCGCC 1 cut(s) 583
SspI AATATT 1 cut(s) 543
SspMI CTAG 1 cut(s) 92
SstI GAGCTC 1 cut(s) 300
TaaI ACNGT 2 cut(s) 484, 785
TaqI TCGA 3 cut(s) 242, 422, 725
TasI AATT 4 cut(s) 492, 512, 611, 853
TauI GCSGC 5 cut(s) 47, 131, 170, 283, 389
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 790
TseFI GTSAC 2 cut(s) 313, 676
Tsp45I GTSAC 2 cut(s) 313, 676
TspDTI ATGAA 2 cut(s) 525, 545
TspGWI ACGGA 2 cut(s) 193, 458
TspRI CASTG 1 cut(s) 790
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 1 cut(s) 492
XceI RCATGY 1 cut(s) 464
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.