Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001727

Physical Location & Seq

Genomic Coordinates Reverse (-)

1677370 .. 1678475

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAAGTTGAAAGTCAAAGCCTCGAAAAATCACAAACTCTACTTCCAAAGGAAATATGATCAGCAAGATCAAGCACCTGCTTTCGGAGATGATGAGTGCATAACCGCATCAATTACAGTTAATGGAAACCGTGACATTTGTTATGCAGAAGTATTGGAGCACCATAAAGCACTCAACCTGAGAAAACAAGAGCCACAGACAGAAAATGAAAACCACCTGAAGCAGGTAGTGATCAAGAGCCATCATTTCCTCAACACAGCAGAAGCACTTTTCGAGCTCGACATCCCTTTCAGCATTCTTCACGACAGCGGCCAGGACTGCAACCCAGATGTAGACAGCAAGCTCACATTAGACTGTGCCTACGAAGTAATGAAACGAAAAGGGATAAGGCATGAGCTCAATGTTCATCATAAATGCGAGAAGATATCAATAAGTTTTGTCAAAATACGGTCCTTGAATGAGCTGGTTAGGCAACTGCATAAAGATTTCGAGACTCTGAAGTTCTACGGGAGAAAAGGAAAATATGAATGTGAGGCGGAAGAGTATCTGCCGAAAATGCTGGAAAGCGATATGCATAGCTGGGAGCCGGACGTGAATTGCATGTGGGATATGGGTTGGGATAAAACTATGTTTGCAGTTGTTGAAGTAGATGAAGTCGTGAAAGATTTGGAGAGGCTTGTGCTCAGTGGACTTGTAGATGAGCTTACCAGAGACCTCTTTCGCACGGGTTTTTCAGCGATACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VARLMGL

Protein Analysis

249

Amino Acids

28.96

Weight (kDa)

5.81

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42710 AT5G42710 AT5G42710
fragaria_vesca	FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870
malus_domestica	MD08G1035200.v1.1 MD15G1031800.v1.1
prunus_persica	Prupe.1G380200_v2.0.a1
pyrus_communis	pycom08g02780 pycom15g02750
rosa_chinensis	RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941
rosa_laevigata	RLG00000011289 RLG00000034832 RLG00000034833
rosa_multiflora	Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003
rosa_roxburghii	Rroxscaffold_1G00028100 Rroxscaffold_7G00167300
rosa_rugosa	Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700
rosa_samantha	Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300
rosa_wichuraiana	Rw5G032650 Rw5G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	85
Acc36I	ACCTGC	2 cut(s)	85, 214
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	3 cut(s)	105, 309, 536
AcoI	YGGCCR	1 cut(s)	310
AcuI	CTGAAG	2 cut(s)	239, 518
AfiI	CCNNNNNNNGG	2 cut(s)	83, 223
AgsI	TTSAA	3 cut(s)	10, 457, 644
AjiI	CACGTC	1 cut(s)	592
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	6 cut(s)	277, 343, 397, 463, 579, 703
AluI	AGCT	6 cut(s)	277, 343, 397, 463, 579, 703
Alw21I	GWGCWC	4 cut(s)	162, 279, 399, 684
Alw26I	GTCTC	2 cut(s)	485, 705
AoxI	GGCC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	450
BanII	GRGCYC	2 cut(s)	279, 399
Bbv12I	GWGCWC	4 cut(s)	162, 279, 399, 684
BccI	CCATC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	314
BclI	TGATCA	2 cut(s)	58, 231
BcoDI	GTCTC	2 cut(s)	485, 705
BfuAI	ACCTGC	2 cut(s)	85, 214
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	450
BmgBI	CACGTC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	450
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 223
BseBI	CCWGG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	83, 223
BseMII	CTCAG	2 cut(s)	170, 697
BseYI	CCCAGC	1 cut(s)	579
BshFI	GGCC	1 cut(s)	312
BsiHKAI	GWGCWC	4 cut(s)	162, 279, 399, 684
BsiSI	CCGG	1 cut(s)	587
BslI	CCNNNNNNNGG	2 cut(s)	83, 223
BsmAI	GTCTC	2 cut(s)	485, 705
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	312
Bso31I	GGTCTC	1 cut(s)	705
Bsp1286I	GDGCHC	4 cut(s)	162, 279, 399, 684
Bsp143I	GATC	3 cut(s)	58, 67, 231
BspACI	CCGC	3 cut(s)	105, 309, 536
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	2 cut(s)	171, 696
BspLI	GGNNCC	1 cut(s)	585
BspMI	ACCTGC	2 cut(s)	85, 214
BspTNI	GGTCTC	1 cut(s)	705
BssMI	GATC	3 cut(s)	58, 67, 231
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	4 cut(s)	118, 131, 356, 450
Bst6I	CTCTTC	1 cut(s)	534
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	2 cut(s)	179, 683
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	282
BstKTI	GATC	3 cut(s)	61, 70, 234
BstMAI	GTCTC	2 cut(s)	485, 705
BstMBI	GATC	3 cut(s)	58, 67, 231
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 469, 556
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	312
BtrI	CACGTC	1 cut(s)	592
BtsCI	GGATG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	691
BveI	ACCTGC	2 cut(s)	85, 214
Cac8I	GCNNGC	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	450
CviAII	CATG	2 cut(s)	392, 601
DdeI	CTNAG	2 cut(s)	179, 683
DpnI	GATC	3 cut(s)	60, 69, 233
DpnII	GATC	3 cut(s)	58, 67, 231
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	551
Ecl136II	GAGCTC	2 cut(s)	277, 397
Eco24I	GRGCYC	2 cut(s)	279, 399
Eco31I	GGTCTC	1 cut(s)	705
Eco32I	GATATC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	450
Eco53kI	GAGCTC	2 cut(s)	277, 397
Eco57I	CTGAAG	2 cut(s)	239, 518
EcoICRI	GAGCTC	2 cut(s)	277, 397
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	312
EcoRV	GATATC	1 cut(s)	426
EcoT22I	ATGCAT	1 cut(s)	576
EcoT38I	GRGCYC	2 cut(s)	279, 399
FaeI	CATG	2 cut(s)	395, 604
FatI	CATG	2 cut(s)	391, 600
FbaI	TGATCA	2 cut(s)	58, 231
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	2 cut(s)	279, 399
Fsp4HI	GCNGC	1 cut(s)	310
GluI	GCNGC	1 cut(s)	310
GsaI	CCCAGC	1 cut(s)	583
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	1 cut(s)	587
Hin1II	CATG	2 cut(s)	395, 604
HinfI	GANTC	1 cut(s)	493
HpaII	CCGG	1 cut(s)	587
Hpy166II	GTNNAC	2 cut(s)	334, 689
Hpy188I	TCNGA	2 cut(s)	86, 498
Hpy188III	TCNNGA	4 cut(s)	235, 302, 490, 658
Hpy8I	GTNNAC	2 cut(s)	334, 689
HpyCH4III	ACNGT	4 cut(s)	118, 131, 356, 450
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	7 cut(s)	99, 146, 321, 478, 574, 600, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 469, 556
HpyF3I	CTNAG	2 cut(s)	179, 683
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	2 cut(s)	395, 604
Ksp22I	TGATCA	2 cut(s)	58, 231
Kzo9I	GATC	3 cut(s)	58, 67, 231
LmnI	GCTCC	2 cut(s)	157, 583
LweI	GCATC	1 cut(s)	116
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	60, 69, 233
MboI	GATC	3 cut(s)	58, 67, 231
MboII	GAAGA	3 cut(s)	290, 433, 551
MhlI	GDGCHC	4 cut(s)	162, 279, 399, 684
MluCI	AATT	2 cut(s)	111, 595
MlyI	GAGTC	1 cut(s)	487
MnlI	CCTC	5 cut(s)	31, 260, 526, 666, 725
Mph1103I	ATGCAT	1 cut(s)	576
MseI	TTAA	2 cut(s)	120, 745
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	1 cut(s)	314
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	3 cut(s)	318, 469, 556
NdeII	GATC	3 cut(s)	58, 67, 231
NlaIII	CATG	2 cut(s)	395, 604
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	1 cut(s)	604
PaqCI	CACCTGC	1 cut(s)	85
PctI	GAATGC	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	311
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp124BI	GAGCTC	2 cut(s)	279, 399
Psp6I	CCWGG	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	450
SacI	GAGCTC	2 cut(s)	279, 399
SaqAI	TTAA	2 cut(s)	120, 745
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	3 cut(s)	58, 67, 231
Sau96I	GGNCC	1 cut(s)	450
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	4 cut(s)	162, 279, 399, 684
SfaNI	GCATC	1 cut(s)	116
SinI	GGWCC	1 cut(s)	450
Sse9I	AATT	2 cut(s)	111, 595
SsiI	CCGC	3 cut(s)	105, 309, 536
SstI	GAGCTC	2 cut(s)	279, 399
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	4 cut(s)	118, 131, 356, 450
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	4 cut(s)	23, 273, 279, 489
TasI	AATT	2 cut(s)	111, 595
TauI	GCSGC	1 cut(s)	312
Tru1I	TTAA	2 cut(s)	120, 745
Tru9I	TTAA	2 cut(s)	120, 745
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	6 cut(s)	17, 222, 386, 395, 540, 666
TspRI	CASTG	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	450
XagI	CCTNNNNNAGG	1 cut(s)	221
XceI	RCATGY	1 cut(s)	604
XmiI	GTMKAC	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.