Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001579

Physical Location & Seq

Genomic Coordinates Reverse (-)

5712632 .. 5714691

Gene Structure 2060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCTTCCCTCCCGTCTCTCCCGAAACCCATCTCGCAAACCCAGCATTTTCCCATAAACCCAGCTCGCCATTCAAGGGGTTTGATCGTAGTTTCACGAAATCATCTATTTTCCGGACATGGGTTGCTTAATTTTCAACATGGGTCGTTCGGAGCGGGAGAGATGAGGCCCATCAGAAGGTCGAACCGAACCAAAGCTGTGTCCGATTATGGGATCCAAGTCTCTGAGGTTCCACAGTTGACTTCCACAGAGGCAATTGAAAGGCTAAAAGCACACCGCGAAAATCAGAATGGTAAGCAACAATTTCTCGCCATGTACTCTAGCGTTTTCGGAGGAATTACGACGGATCCAGCTGCTATGGTGATTCCCATTGATGACCACATGGTCCACAGAGGGCATGGTGTTTTCGACACTGCTGCTATAAAGGATGGATATCTCTACGAGTTGGACCAGCACCTTGACCGTATTTTAAGGTCAGCATCCATGGCGAAAATTGACCTGCCATTTGATAGGGAAACCATAAGAAGGATACTTTTACAAACTGTGAGTGTTTCCAAGTGCAAAACAGGATCTCTGAGATACTGGCTCTCAGCAGGACCGGGTGATTTTCAGTTATCCCCATCTGGCTGCCATCAGCCATCGCTTTATGCTATTGTGATCCAAGATCAATCGCCCTTTAGTTCGAAGGGAATTAAAGTAGTAACTTCTTCGATCCCAATAAAACACCCCCAATTTGCAACCATGAAGAGTGTGAATTATCTTCCAAATGTGCTTTCGAAGATGGAGGCTGAAGAAAAGGGTGCATTCGCAGCCATATGGCTGGACGGAGATGGATTCATCGCTGAAGGGCCTAACATGAATGTGGCTTTTGTTACAAAAGAGAAGGAACTTGTGATGCCTCAGTTTGACAAAATCCTAAGTGGGTGCACAGCGAGGAGACTTTTGGCTCTTGCAGAAGGGCTGGTGGGGGAGGGCAAGCTTCGGGGAGTAAGAGTAGACAATGTGACTGTTGAGGAAGGGAAGAAGGCAGATGAGATGATGCTTATTGGCAGTGGAATTCTCGTCTGCCCTGTAGTGCAGTGGGACGAGCAGATCATTGGGGATGGTAAAGAAGGCTCGTTGACTCAGATTCTCCTGAATCTTATTATCGAGGACATGAAATCCGGCCCGCCTTCTGTCCGAGCACCTATTCCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0019438 GO:0019752 GO:0032787 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046482 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

400

Amino Acids

43.78

Weight (kDa)

8.25

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	134 - 361	1.8e-46	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57850 AT5G57850
fragaria_vesca	FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_3g19330 FvH4_3g19330
malus_domestica	MD03G1234900.v1.1 MD11G1255500.v1.1 MD15G1096500.v1.1
prunus_persica	Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.4G174300_v2.0.a1 Prupe.4G174300_v2.0.a1
pyrus_communis	pycom03g18150 pycom11g22580 pycom15g08860
rosa_chinensis	RchiOBHm_Chr5g0032391 RchiOBHm_Chr6g0277671 RchiOBHm_Chr6g0305891
rosa_laevigata	RLG00000010849 RLG00000033394
rosa_multiflora	Rmu_sc0002818.1_g000006 Rmu_sc0006926.1_g000027
rosa_roxburghii	Rroxscaffold_1G00048040 Rroxscaffold_7G00162240
rosa_rugosa	Rorug05G0131700.1 Rorug06G0344700 Rorug06G0344800
rosa_samantha	Rh1DG018000 Rh5AG224900 Rh5BG226000 Rh5CG251400 Rh5DG230600 Rh6AG456600 Rh6BG444700 Rh6CG470500 Rh6DG217800 Rh6DG457200 Rh7AG381300 Rh7CG400800 Rh7DG257300
rosa_wichuraiana	Rw2G028520 Rw5G020540 Rw6G039830 Rw7G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	507
AccBSI	CCGCTC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	996
AccII	CGCG	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	113
AciI	CCGC	3 cut(s)	155, 277, 1169
AclWI	GGATC	7 cut(s)	208, 221, 341, 354, 577, 652, 706
AcsI	RAATTY	1 cut(s)	1056
AcuI	CTGAAG	2 cut(s)	810, 864
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	5 cut(s)	76, 120, 177, 210, 525
AgsI	TTSAA	3 cut(s)	75, 137, 260
AjuI	GAANNNNNNNTTGG	2 cut(s)	757, 789
AluBI	AGCT	4 cut(s)	65, 197, 353, 979
AluI	AGCT	4 cut(s)	65, 197, 353, 979
Alw21I	GWGCWC	2 cut(s)	929, 1186
Alw26I	GTCTC	3 cut(s)	21, 226, 931
Alw44I	GTGCAC	1 cut(s)	925
AlwI	GGATC	7 cut(s)	208, 221, 341, 354, 577, 652, 706
Aor13HI	TCCGGA	1 cut(s)	113
AoxI	GGCC	3 cut(s)	167, 848, 1165
ApaLI	GTGCAC	1 cut(s)	925
ApeKI	GCWGC	4 cut(s)	353, 416, 627, 809
ApoI	RAATTY	1 cut(s)	1056
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
AspS9I	GGNCC	6 cut(s)	168, 385, 448, 596, 848, 1166
AsuC2I	CCSGG	1 cut(s)	600
AsuHPI	GGTGA	2 cut(s)	373, 614
AsuII	TTCGAA	2 cut(s)	683, 776
AvaII	GGWCC	3 cut(s)	385, 448, 596
BaeGI	GKGCMC	1 cut(s)	929
BamHI	GGATCC	2 cut(s)	213, 346
Bbv12I	GWGCWC	2 cut(s)	929, 1186
BbvI	GCAGC	4 cut(s)	340, 403, 614, 821
BccI	CCATC	9 cut(s)	38, 179, 422, 628, 639, 646, 775, 824, 1097
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciVI	GTATCC	1 cut(s)	522
BcnI	CCSGG	1 cut(s)	600
BcoDI	GTCTC	3 cut(s)	21, 226, 931
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	1071
BfuAI	ACCTGC	1 cut(s)	507
BfuI	GTATCC	1 cut(s)	522
BisI	GCNGC	4 cut(s)	354, 417, 628, 810
BlsI	GCNGC	4 cut(s)	355, 418, 629, 811
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	3 cut(s)	385, 448, 596
BmgT120I	GGNCC	6 cut(s)	168, 385, 448, 596, 848, 1166
BmiI	GGNNCC	3 cut(s)	215, 231, 348
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	3 cut(s)	488, 885, 1029
Bpu14I	TTCGAA	2 cut(s)	683, 776
BpuMI	CCSGG	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	483
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	978, 1008
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 120, 177, 210, 525
Bse1I	ACTGG	1 cut(s)	587
Bse8I	GATNNNNATC	1 cut(s)	432
BseAI	TCCGGA	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	3 cut(s)	433, 479, 1108
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	5 cut(s)	76, 120, 177, 210, 525
BseMII	CTCAG	5 cut(s)	216, 566, 603, 914, 1139
BseNI	ACTGG	1 cut(s)	587
BseRI	GAGGAG	1 cut(s)	949
BseSI	GKGCMC	1 cut(s)	929
BseXI	GCAGC	4 cut(s)	340, 403, 614, 821
BseYI	CCCAGC	2 cut(s)	42, 61
BsgI	GTGCAG	1 cut(s)	1097
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	169, 850, 1167
BsiHKAI	GWGCWC	2 cut(s)	929, 1186
BsiSI	CCGG	3 cut(s)	114, 599, 1164
BslFI	GGGAC	1 cut(s)	1097
BslI	CCNNNNNNNGG	5 cut(s)	76, 120, 177, 210, 525
BsmAI	GTCTC	3 cut(s)	21, 226, 931
BsmBI	CGTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	1097
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	3 cut(s)	169, 850, 1167
Bsp119I	TTCGAA	2 cut(s)	683, 776
Bsp1286I	GDGCHC	2 cut(s)	929, 1186
Bsp13I	TCCGGA	1 cut(s)	113
Bsp143I	GATC	8 cut(s)	84, 213, 346, 569, 657, 664, 711, 1092
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	3 cut(s)	155, 277, 1169
BspANI	GGCC	3 cut(s)	169, 850, 1167
BspCNI	CTCAG	5 cut(s)	217, 567, 602, 913, 1138
BspEI	TCCGGA	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	215, 231, 348
BspMI	ACCTGC	1 cut(s)	507
BspPI	GGATC	7 cut(s)	208, 221, 341, 354, 577, 652, 706
BspT104I	TTCGAA	2 cut(s)	683, 776
BsrBI	CCGCTC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	8 cut(s)	84, 213, 346, 569, 657, 664, 711, 1092
BssT1I	CCWWGG	1 cut(s)	483
Bst4CI	ACNGT	4 cut(s)	237, 464, 544, 1009
Bst6I	CTCTTC	1 cut(s)	740
BstBI	TTCGAA	2 cut(s)	683, 776
BstC8I	GCNNGC	3 cut(s)	67, 977, 1169
BstDEI	CTNAG	6 cut(s)	225, 575, 589, 900, 917, 1125
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	433, 479, 1108
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	8 cut(s)	87, 216, 349, 572, 660, 667, 714, 1095
BstMAI	GTCTC	3 cut(s)	21, 226, 931
BstMBI	GATC	8 cut(s)	84, 213, 346, 569, 657, 664, 711, 1092
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 485, 809
BstSCI	CCNGG	1 cut(s)	598
BstSFI	CTRYAG	1 cut(s)	1071
BstSLI	GKGCMC	1 cut(s)	929
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	4 cut(s)	340, 403, 614, 821
BstX2I	RGATCY	3 cut(s)	213, 346, 569
BstXI	CCANNNNNNTGG	1 cut(s)	820
BstYI	RGATCY	3 cut(s)	213, 346, 569
BsuI	GTATCC	1 cut(s)	522
BsuRI	GGCC	3 cut(s)	169, 850, 1167
BtgI	CCRYGG	1 cut(s)	483
BtgZI	GCGATG	2 cut(s)	624, 823
BtsCI	GGATG	3 cut(s)	433, 479, 1108
BtsI	GCAGTG	3 cut(s)	411, 1057, 1085
BtsIMutI	CAGTG	3 cut(s)	411, 1057, 1085
BveI	ACCTGC	1 cut(s)	507
Cac8I	GCNNGC	3 cut(s)	67, 977, 1169
Cfr13I	GGNCC	6 cut(s)	168, 385, 448, 596, 848, 1166
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	9 cut(s)	119, 140, 313, 382, 398, 484, 742, 856, 1156
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	6 cut(s)	225, 575, 589, 900, 917, 1125
DpnI	GATC	8 cut(s)	86, 215, 348, 571, 659, 666, 713, 1094
DpnII	GATC	8 cut(s)	84, 213, 346, 569, 657, 664, 711, 1092
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	740
EarI	CTCTTC	1 cut(s)	740
Eco130I	CCWWGG	1 cut(s)	483
Eco32I	GATATC	1 cut(s)	434
Eco47I	GGWCC	3 cut(s)	385, 448, 596
Eco57I	CTGAAG	2 cut(s)	810, 864
EcoO109I	RGGNCCY	1 cut(s)	848
EcoRI	GAATTC	1 cut(s)	1056
EcoRV	GATATC	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	9 cut(s)	122, 143, 316, 385, 401, 487, 745, 859, 1159
FaqI	GGGAC	1 cut(s)	1097
FatI	CATG	9 cut(s)	118, 139, 312, 381, 397, 483, 741, 855, 1155
FauI	CCCGC	2 cut(s)	148, 1176
FauNDI	CATATG	1 cut(s)	815
FblI	GTMKAC	1 cut(s)	996
Fnu4HI	GCNGC	4 cut(s)	354, 417, 628, 810
FokI	GGATG	3 cut(s)	440, 466, 1115
Fsp4HI	GCNGC	4 cut(s)	354, 417, 628, 810
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	4 cut(s)	354, 417, 628, 810
GsaI	CCCAGC	2 cut(s)	46, 65
HaeIII	GGCC	3 cut(s)	169, 850, 1167
HapII	CCGG	3 cut(s)	114, 599, 1164
Hin1II	CATG	9 cut(s)	122, 143, 316, 385, 401, 487, 745, 859, 1159
HincII	GTYRAC	2 cut(s)	240, 1122
HindII	GTYRAC	2 cut(s)	240, 1122
HindIII	AAGCTT	1 cut(s)	977
HinfI	GANTC	5 cut(s)	364, 834, 1123, 1129, 1138
HpaII	CCGG	3 cut(s)	114, 599, 1164
HphI	GGTGA	2 cut(s)	373, 614
Hpy166II	GTNNAC	5 cut(s)	240, 388, 927, 997, 1122
Hpy188I	TCNGA	9 cut(s)	152, 176, 205, 226, 288, 332, 576, 1128, 1181
Hpy188III	TCNNGA	4 cut(s)	22, 96, 114, 1135
Hpy8I	GTNNAC	5 cut(s)	240, 388, 927, 997, 1122
Hpy99I	CGWCG	1 cut(s)	346
HpyCH4III	ACNGT	4 cut(s)	237, 464, 544, 1009
HpyCH4V	TGCA	6 cut(s)	561, 737, 803, 927, 953, 1078
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 485, 809
HpyF3I	CTNAG	6 cut(s)	225, 575, 589, 900, 917, 1125
Hsp92II	CATG	9 cut(s)	122, 143, 316, 385, 401, 487, 745, 859, 1159
Kpn2I	TCCGGA	1 cut(s)	113
Kzo9I	GATC	8 cut(s)	84, 213, 346, 569, 657, 664, 711, 1092
LmnI	GCTCC	1 cut(s)	152
Lsp1109I	GCAGC	4 cut(s)	340, 403, 614, 821
LweI	GCATC	3 cut(s)	488, 885, 1029
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	700, 871, 1003
MalI	GATC	8 cut(s)	86, 215, 348, 571, 659, 666, 713, 1094
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	8 cut(s)	84, 213, 346, 569, 657, 664, 711, 1092
MboII	GAAGA	6 cut(s)	699, 752, 757, 790, 803, 1033
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	3 cut(s)	213, 346, 569
MhlI	GDGCHC	2 cut(s)	929, 1186
MluCI	AATT	9 cut(s)	130, 255, 302, 336, 492, 690, 731, 754, 1056
MlyI	GAGTC	1 cut(s)	1117
MmeI	TCCRAC	1 cut(s)	426
MroI	TCCGGA	1 cut(s)	113
MseI	TTAA	3 cut(s)	129, 470, 693
MslI	CAYNNNNRTG	1 cut(s)	860
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	3 cut(s)	114, 599, 1164
MspR9I	CCNGG	1 cut(s)	600
MunI	CAATTG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	803
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	43, 485, 809
NciI	CCSGG	1 cut(s)	600
NcoI	CCATGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	815
NdeII	GATC	8 cut(s)	84, 213, 346, 569, 657, 664, 711, 1092
NlaIII	CATG	9 cut(s)	122, 143, 316, 385, 401, 487, 745, 859, 1159
NlaIV	GGNNCC	3 cut(s)	215, 231, 348
NmuCI	GTSAC	1 cut(s)	1003
NspV	TTCGAA	2 cut(s)	683, 776
PctI	GAATGC	1 cut(s)	803
PfeI	GAWTC	4 cut(s)	364, 834, 1129, 1138
PkrI	GCNGC	4 cut(s)	355, 418, 629, 811
PleI	GAGTC	1 cut(s)	1117
PpsI	GAGTC	1 cut(s)	1117
PspFI	CCCAGC	2 cut(s)	42, 61
PspN4I	GGNNCC	3 cut(s)	215, 231, 348
PspPI	GGNCC	6 cut(s)	168, 385, 448, 596, 848, 1166
PsuI	RGATCY	3 cut(s)	213, 346, 569
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	860
SaqAI	TTAA	3 cut(s)	129, 470, 693
SatI	GCNGC	4 cut(s)	354, 417, 628, 810
Sau3AI	GATC	8 cut(s)	84, 213, 346, 569, 657, 664, 711, 1092
Sau96I	GGNCC	6 cut(s)	168, 385, 448, 596, 848, 1166
SchI	GAGTC	1 cut(s)	1117
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	2 cut(s)	929, 1186
SfaNI	GCATC	3 cut(s)	488, 885, 1029
SfcI	CTRYAG	1 cut(s)	1071
SfuI	TTCGAA	2 cut(s)	683, 776
SinI	GGWCC	3 cut(s)	385, 448, 596
SmiMI	CAYNNNNRTG	1 cut(s)	860
Sse9I	AATT	9 cut(s)	130, 255, 302, 336, 492, 690, 731, 754, 1056
SsiI	CCGC	3 cut(s)	155, 277, 1169
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	598
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	4 cut(s)	237, 464, 544, 1009
TaqI	TCGA	6 cut(s)	182, 408, 683, 710, 776, 1149
TasI	AATT	9 cut(s)	130, 255, 302, 336, 492, 690, 731, 754, 1056
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	4 cut(s)	364, 834, 1129, 1138
Tru1I	TTAA	3 cut(s)	129, 470, 693
Tru9I	TTAA	3 cut(s)	129, 470, 693
TscAI	CASTG	3 cut(s)	418, 1057, 1085
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	4 cut(s)	353, 416, 627, 809
Tsp45I	GTSAC	1 cut(s)	1003
TspDTI	ATGAA	4 cut(s)	758, 826, 872, 1172
TspGWI	ACGGA	2 cut(s)	359, 840
TspRI	CASTG	3 cut(s)	418, 1057, 1085
VneI	GTGCAC	1 cut(s)	925
VpaK11BI	GGWCC	3 cut(s)	385, 448, 596
XapI	RAATTY	1 cut(s)	1056
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	996
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.