Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Reverse (-)

34088674 .. 34091647

Gene Structure 2974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGAGCTATCTCTCGGGAAATCCAGAAATCCGATTAGCTCTCAATGAGGATCTGGGCATAGGAAGAGGTGGAGGGTCAGGCTATGACCATAGGAGTTCATTTGGATCAGCAGCAGTGGTACTTGATGATTGCAATTTTCATGAATCTGTACGTCTTGATAATTTTGAAGTAGACAAAACTCTGACCCTGGTGCCCCCTGACGGCGAATTTCCTGTCATGAACTACCGTATGACTCAAGAGTTCAAGCCCCCTTTTCGTATTAATGCGTTGATTGAAGAAGCAGGAGTTCATAAGGCTGAAGTGATTCTGAAAATATATGCCGAGTTCCCCTTGAACATTACTTCCAACACAATTGCTATACAAATGCCGCTACCTAAATATACTATCAGAGCCAGTTTTGAGTTGGAACCAGGAGCAGTTGGACAAACGACAGATTTCAAGGATGCCAATAAGAGACTTGAATGGGGTTTAAAGAAGATTGTTGGTGGATCTGAACATACACTACGTGCCAGACTCACATTTTCACCGGAAGCACATGGAAATATTACAAAAGAATCTGGACCAGTTAGCATGACATTTACAATACCTATGTATAATTCTTCAAGACTTCAGGTAAAGTACTTGCAGATAGCAAAGAAATCTGGAACTTATAATCCATACCGGTGGGTAAGATATGTTACTCTCGCCAATTCATACGTTGCTCGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019904 GO:0030117 GO:0030119 GO:0030124 GO:0031090 GO:0031410 GO:0031904 GO:0031974 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072657 GO:0072665 GO:0072666 GO:0090160 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

238

Amino Acids

26.56

Weight (kDa)

8.84

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	1 - 237	5.5e-58	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AccB1I	GGYRCC	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	3 cut(s)	60, 115, 499
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	2 cut(s)	321, 596
AdeI	CACNNNGTG	1 cut(s)	509
AfaI	GTAC	3 cut(s)	123, 153, 623
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgeI	ACCGGT	1 cut(s)	663
AgsI	TTSAA	7 cut(s)	170, 247, 278, 337, 442, 464, 606
AjnI	CCWGG	2 cut(s)	189, 412
AloI	GAACNNNNNNTCC	4 cut(s)	329, 361, 640, 672
AluBI	AGCT	2 cut(s)	9, 41
AluI	AGCT	2 cut(s)	9, 41
Alw26I	GTCTC	1 cut(s)	451
AlwI	GGATC	3 cut(s)	60, 115, 499
Ama87I	CYCGRG	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AseI	ATTAAT	1 cut(s)	264
AsiGI	ACCGGT	1 cut(s)	663
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	563
AsuHPI	GGTGA	1 cut(s)	519
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	563
BaeGI	GKGCMC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	2 cut(s)	191, 414
BcoDI	GTCTC	1 cut(s)	451
BisI	GCNGC	2 cut(s)	114, 371
BlsI	GCNGC	2 cut(s)	115, 372
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	2 cut(s)	191, 414
Bme18I	GGWCC	1 cut(s)	563
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	2 cut(s)	195, 411
BmrFI	CCNGG	2 cut(s)	191, 414
BmsI	GCATC	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	2 cut(s)	529, 663
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	663
Bse1I	ACTGG	2 cut(s)	396, 566
BseBI	CCWGG	2 cut(s)	191, 414
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	396, 566
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	193
BshTI	ACCGGT	1 cut(s)	663
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	530, 664
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	451
BsoBI	CYCGRG	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	3 cut(s)	52, 107, 491
BspACI	CCGC	1 cut(s)	371
BspHI	TCATGA	2 cut(s)	142, 219
BspLI	GGNNCC	2 cut(s)	195, 411
BspPI	GGATC	3 cut(s)	60, 115, 499
BspT107I	GGYRCC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	663
BsrI	ACTGG	2 cut(s)	396, 566
BssAI	RCCGGY	1 cut(s)	663
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	52, 107, 491
Bst2UI	CCWGG	2 cut(s)	191, 414
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	509
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	3 cut(s)	55, 110, 494
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	3 cut(s)	52, 107, 491
BstNI	CCWGG	2 cut(s)	191, 414
BstSCI	CCNGG	2 cut(s)	189, 412
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	125
BstX2I	RGATCY	2 cut(s)	52, 491
BstXI	CCANNNNNNTGG	1 cut(s)	666
BstYI	RGATCY	2 cut(s)	52, 491
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
CciI	TCATGA	2 cut(s)	142, 219
Cfr10I	RCCGGY	1 cut(s)	663
Cfr13I	GGNCC	1 cut(s)	563
Csp6I	GTAC	3 cut(s)	122, 152, 622
CspAI	ACCGGT	1 cut(s)	663
CviAII	CATG	4 cut(s)	143, 220, 539, 574
CviJI	RGCY	6 cut(s)	9, 41, 84, 250, 299, 395
CviKI_1	RGCY	6 cut(s)	9, 41, 84, 250, 299, 395
CviQI	GTAC	3 cut(s)	122, 152, 622
DpnI	GATC	3 cut(s)	54, 109, 493
DpnII	GATC	3 cut(s)	52, 107, 491
DraI	TTTAAA	1 cut(s)	474
DraIII	CACNNNGTG	1 cut(s)	509
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	563
Eco57I	CTGAAG	2 cut(s)	321, 596
Eco88I	CYCGRG	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	189, 412
FaeI	CATG	4 cut(s)	146, 223, 542, 577
FatI	CATG	4 cut(s)	142, 219, 538, 573
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	114, 371
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	2 cut(s)	114, 371
GluI	GCNGC	2 cut(s)	114, 371
HapII	CCGG	2 cut(s)	530, 664
Hin1II	CATG	4 cut(s)	146, 223, 542, 577
HinfI	GANTC	5 cut(s)	146, 235, 307, 516, 557
HpaII	CCGG	2 cut(s)	530, 664
HphI	GGTGA	1 cut(s)	519
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	6 cut(s)	35, 186, 312, 392, 496, 708
Hpy188III	TCNNGA	9 cut(s)	18, 26, 143, 158, 220, 239, 561, 606, 645
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	3 cut(s)	154, 508, 699
HpyCH4V	TGCA	2 cut(s)	135, 628
HpySE526I	ACGT	3 cut(s)	154, 508, 699
Hsp92II	CATG	4 cut(s)	146, 223, 542, 577
Kzo9I	GATC	3 cut(s)	52, 107, 491
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	1 cut(s)	436
MaeII	ACGT	3 cut(s)	154, 508, 699
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	3 cut(s)	54, 109, 493
MboI	GATC	3 cut(s)	52, 107, 491
MboII	GAAGA	5 cut(s)	16, 78, 290, 490, 594
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	2 cut(s)	52, 491
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	6 cut(s)	136, 163, 209, 354, 598, 691
MlyI	GAGTC	2 cut(s)	229, 510
MmeI	TCCRAC	3 cut(s)	372, 387, 403
MnlI	CCTC	3 cut(s)	43, 62, 68
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	2 cut(s)	264, 473
MslI	CAYNNNNRTG	1 cut(s)	664
MspI	CCGG	2 cut(s)	530, 664
MspR9I	CCNGG	2 cut(s)	191, 414
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	2 cut(s)	191, 414
NdeII	GATC	3 cut(s)	52, 107, 491
NlaIII	CATG	4 cut(s)	146, 223, 542, 577
NlaIV	GGNNCC	2 cut(s)	195, 411
NmeAIII	GCCGAG	1 cut(s)	349
PagI	TCATGA	2 cut(s)	142, 219
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	3 cut(s)	146, 307, 557
PinAI	ACCGGT	1 cut(s)	663
PkrI	GCNGC	2 cut(s)	115, 372
PleI	GAGTC	2 cut(s)	229, 510
PpsI	GAGTC	2 cut(s)	229, 510
Ppu21I	YACGTR	1 cut(s)	509
PshBI	ATTAAT	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	189, 412
PspGI	CCWGG	2 cut(s)	189, 412
PspN4I	GGNNCC	2 cut(s)	195, 411
PspPI	GGNCC	1 cut(s)	563
PsrI	GAACNNNNNNTAC	2 cut(s)	489, 521
PsuI	RGATCY	2 cut(s)	52, 491
RsaI	GTAC	3 cut(s)	123, 153, 623
RsaNI	GTAC	3 cut(s)	122, 152, 622
RseI	CAYNNNNRTG	1 cut(s)	664
SaqAI	TTAA	2 cut(s)	264, 473
SatI	GCNGC	2 cut(s)	114, 371
Sau3AI	GATC	3 cut(s)	52, 107, 491
Sau96I	GGNCC	1 cut(s)	563
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	2 cut(s)	229, 510
ScrFI	CCNGG	2 cut(s)	191, 414
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	9 cut(s)	11, 43, 73, 157, 379, 511, 592, 618, 702
SfaNI	GCATC	1 cut(s)	436
SinI	GGWCC	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	664
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	6 cut(s)	136, 163, 209, 354, 598, 691
SsiI	CCGC	1 cut(s)	371
SspI	AATATT	1 cut(s)	547
StyD4I	CCNGG	2 cut(s)	189, 412
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	3 cut(s)	157, 511, 702
TasI	AATT	6 cut(s)	136, 163, 209, 354, 598, 691
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	1 cut(s)	373
TfiI	GAWTC	3 cut(s)	146, 307, 557
Tru1I	TTAA	2 cut(s)	264, 473
Tru9I	TTAA	2 cut(s)	264, 473
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	7 cut(s)	17, 90, 131, 159, 236, 281, 684
TspRI	CASTG	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	563
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	306
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.