Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Reverse (-)

39135295 .. 39139029

Gene Structure 3735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGATGGAAGCACAGGAGGTGGAGGTGGAGGCGCAGGCGGCGACCGAAAGTGGCGATCAACAACTCAAGCTTTATTCCTACTGGAGGAGCTCTTGCGCCTACCGTGTTCGAATTGCTCTCAACTTGAAAGGGTTGAAATACGAGTACAAAGCTGTAAACCTACAGAAGGGAGAGCAATTCAGTCCGGAGTTCAGAAAGCTGAATCCGCTCGGGTATGTGCCTGTGCTTGTGGATGGGGACACCCTTGTTGCTGACTCATTTGCCATCCTAATGTATTTAGAAGAAAAGTACCCGCAACATCCATTGTTACCGCCCGATCTTCAGAAAAAAGCTATCAATTACCAGGCTGCAAATATTGTTTCCTCAAGCATACAACCTCTACAAAATCTGGCTGTACTGAAGTACATTGAAGAAAAAGTTAGTCCCGATGAGAAACTTGAATGGGTTAAAGTTCATATTGGAAAAGGCTTTTCAGCACTTGAAGAACTGCTGAACAACCATGCAGGAAAATATGCAACTGGAGATGAAGTTTACATGGCAGATTTGTTTCTGGCACCCCAGGTTTATGCAGCCATTAGGTTCCAGCTAAACATGACTCAGTTCCCCCTTTTGGCCAGGTTGCATGAGGCATACAAAAAGATACCGGCATTCCTAGATGCTATACCAGAAAAGCAGCCGGATGCTCCTTCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

232

Amino Acids

26.15

Weight (kDa)

5.48

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	21 - 94	8.4e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	24 - 100	1.6e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	30 - 95	2.9e-17	Glutathione S-transferase, N-terminal domain
GST_C_3	PF14497	137 - 215	1.2e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AccBSI	CCGCTC	1 cut(s)	208
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	4 cut(s)	38, 206, 293, 311
AcoI	YGGCCR	1 cut(s)	612
AcuI	CTGAAG	2 cut(s)	305, 419
AfaI	GTAC	4 cut(s)	146, 290, 396, 404
AfiI	CCNNNNNNNGG	3 cut(s)	84, 166, 610
AgsI	TTSAA	5 cut(s)	127, 136, 410, 440, 482
AjnI	CCWGG	3 cut(s)	342, 558, 614
AluBI	AGCT	6 cut(s)	70, 90, 152, 199, 332, 586
AluI	AGCT	6 cut(s)	70, 90, 152, 199, 332, 586
Alw21I	GWGCWC	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	209
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	3 cut(s)	347, 569, 673
AspLEI	GCGC	2 cut(s)	34, 98
AsuII	TTCGAA	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	3 cut(s)	334, 581, 685
BccI	CCATC	2 cut(s)	227, 272
BciT130I	CCWGG	3 cut(s)	344, 560, 616
BfaI	CTAG	1 cut(s)	653
BfmI	CTRYAG	1 cut(s)	161
BisI	GCNGC	4 cut(s)	39, 348, 570, 674
BlsI	GCNGC	4 cut(s)	40, 349, 571, 675
Bme1390I	CCNGG	3 cut(s)	344, 560, 616
BmeT110I	CYCGRG	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	555, 581
BmrFI	CCNGG	3 cut(s)	344, 560, 616
BmsI	GCATC	2 cut(s)	646, 670
BpmI	CTGGAG	2 cut(s)	103, 540
Bpu14I	TTCGAA	1 cut(s)	109
BpuEI	CTTGAG	2 cut(s)	50, 349
BsaJI	CCNNGG	1 cut(s)	558
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 166, 610
Bse118I	RCCGGY	1 cut(s)	643
Bse1I	ACTGG	2 cut(s)	86, 523
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	3 cut(s)	344, 560, 616
BseDI	CCNNGG	1 cut(s)	558
BseGI	GGATG	4 cut(s)	238, 264, 298, 685
BseLI	CCNNNNNNNGG	3 cut(s)	84, 166, 610
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	2 cut(s)	86, 523
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	334, 581, 685
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	614
BshNI	GGYRCC	1 cut(s)	553
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	3 cut(s)	185, 644, 677
BslFI	GGGAC	2 cut(s)	251, 408
BslI	CCNNNNNNNGG	3 cut(s)	84, 166, 610
BsmFI	GGGAC	2 cut(s)	251, 408
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	614
BsoBI	CYCGRG	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	55, 316
BspACI	CCGC	4 cut(s)	38, 206, 293, 311
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	1 cut(s)	610
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	555, 581
BspT104I	TTCGAA	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	553
BsrBI	CCGCTC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	643
BsrI	ACTGG	2 cut(s)	86, 523
BssAI	RCCGGY	1 cut(s)	643
BssECI	CCNNGG	1 cut(s)	558
BssMI	GATC	2 cut(s)	55, 316
Bst2UI	CCWGG	3 cut(s)	344, 560, 616
Bst4CI	ACNGT	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	597
BstENI	CCTNNNNNAGG	2 cut(s)	82, 164
BstF5I	GGATG	4 cut(s)	238, 264, 298, 685
BstHHI	GCGC	2 cut(s)	34, 98
BstKTI	GATC	2 cut(s)	58, 319
BstMBI	GATC	2 cut(s)	55, 316
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 205
BstNI	CCWGG	3 cut(s)	344, 560, 616
BstSCI	CCNGG	3 cut(s)	342, 558, 614
BstSFI	CTRYAG	1 cut(s)	161
BstV1I	GCAGC	3 cut(s)	334, 581, 685
BsuRI	GGCC	1 cut(s)	614
BtsCI	GGATG	4 cut(s)	238, 264, 298, 685
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	2 cut(s)	34, 98
Cfr10I	RCCGGY	1 cut(s)	643
Csp6I	GTAC	4 cut(s)	145, 289, 395, 403
CviAII	CATG	4 cut(s)	500, 535, 592, 623
CviQI	GTAC	4 cut(s)	145, 289, 395, 403
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	2 cut(s)	57, 318
DpnII	GATC	2 cut(s)	55, 316
EaeI	YGGCCR	1 cut(s)	612
Ecl136II	GAGCTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	305, 419
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	90
EcoNI	CCTNNNNNAGG	2 cut(s)	82, 164
EcoRII	CCWGG	3 cut(s)	342, 558, 614
EcoT38I	GRGCYC	1 cut(s)	92
FaeI	CATG	4 cut(s)	503, 538, 595, 626
FaqI	GGGAC	2 cut(s)	251, 408
FatI	CATG	4 cut(s)	499, 534, 591, 622
FauI	CCCGC	1 cut(s)	300
Fnu4HI	GCNGC	4 cut(s)	39, 348, 570, 674
FokI	GGATG	4 cut(s)	245, 251, 285, 692
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	4 cut(s)	39, 348, 570, 674
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	2 cut(s)	33, 97
GluI	GCNGC	4 cut(s)	39, 348, 570, 674
GsuI	CTGGAG	2 cut(s)	103, 540
HaeIII	GGCC	1 cut(s)	614
HapII	CCGG	3 cut(s)	185, 644, 677
HhaI	GCGC	2 cut(s)	34, 98
Hin1II	CATG	4 cut(s)	503, 538, 595, 626
Hin6I	GCGC	2 cut(s)	32, 96
HinP1I	GCGC	2 cut(s)	32, 96
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	3 cut(s)	202, 254, 595
HpaII	CCGG	3 cut(s)	185, 644, 677
Hpy166II	GTNNAC	2 cut(s)	157, 532
Hpy188I	TCNGA	2 cut(s)	194, 324
Hpy188III	TCNNGA	2 cut(s)	185, 425
Hpy8I	GTNNAC	2 cut(s)	157, 532
HpyAV	CCTTC	2 cut(s)	160, 696
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	5 cut(s)	350, 503, 515, 569, 622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 205
HpyF3I	CTNAG	1 cut(s)	597
Hsp92II	CATG	4 cut(s)	503, 538, 595, 626
HspAI	GCGC	2 cut(s)	32, 96
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	55, 316
LmnI	GCTCC	2 cut(s)	87, 688
Lsp1109I	GCAGC	3 cut(s)	334, 581, 685
LweI	GCATC	2 cut(s)	646, 670
MaeI	CTAG	1 cut(s)	653
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	2 cut(s)	57, 318
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	2 cut(s)	55, 316
MboII	GAAGA	4 cut(s)	293, 311, 422, 494
MhlI	GDGCHC	1 cut(s)	92
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	3 cut(s)	111, 176, 337
MluNI	TGGCCA	1 cut(s)	614
MlyI	GAGTC	2 cut(s)	248, 589
MnlI	CCTC	7 cut(s)	10, 16, 22, 78, 373, 387, 619
Mox20I	TGGCCA	1 cut(s)	614
MroI	TCCGGA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	614
MspI	CCGG	3 cut(s)	185, 644, 677
MspR9I	CCNGG	3 cut(s)	344, 560, 616
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	3 cut(s)	344, 560, 616
MwoI	GCNNNNNNNGC	2 cut(s)	38, 205
NdeII	GATC	2 cut(s)	55, 316
NlaIII	CATG	4 cut(s)	503, 538, 595, 626
NlaIV	GGNNCC	2 cut(s)	555, 581
NspV	TTCGAA	1 cut(s)	109
PctI	GAATGC	1 cut(s)	647
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	40, 349, 571, 675
PleI	GAGTC	2 cut(s)	248, 589
PpsI	GAGTC	2 cut(s)	248, 589
Psp124BI	GAGCTC	1 cut(s)	92
Psp6I	CCWGG	3 cut(s)	342, 558, 614
PspGI	CCWGG	3 cut(s)	342, 558, 614
PspN4I	GGNNCC	2 cut(s)	555, 581
RsaI	GTAC	4 cut(s)	146, 290, 396, 404
RsaNI	GTAC	4 cut(s)	145, 289, 395, 403
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	4 cut(s)	39, 348, 570, 674
Sau3AI	GATC	2 cut(s)	55, 316
SchI	GAGTC	2 cut(s)	248, 589
ScrFI	CCNGG	3 cut(s)	344, 560, 616
SduI	GDGCHC	1 cut(s)	92
SfaNI	GCATC	2 cut(s)	646, 670
SfcI	CTRYAG	1 cut(s)	161
SfuI	TTCGAA	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	65, 364
SmoI	CTYRAG	2 cut(s)	65, 364
Sse9I	AATT	3 cut(s)	111, 176, 337
SsiI	CCGC	4 cut(s)	38, 206, 293, 311
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	1 cut(s)	653
SstI	GAGCTC	1 cut(s)	92
StyD4I	CCNGG	3 cut(s)	342, 558, 614
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	109
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	3 cut(s)	111, 176, 337
TatI	WGTACW	3 cut(s)	144, 394, 402
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseI	GCWGC	3 cut(s)	347, 569, 673
TspDTI	ATGAA	2 cut(s)	443, 540
XagI	CCTNNNNNAGG	2 cut(s)	82, 164
XspI	CTAG	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.