pycom16g04810

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0003016
Physical Location & Seq
Reverse (-)
3083951 .. 3085988
2038 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 891 bp
ATGGAAGACTTATGGAAGCGAGCGAAGACCTTCGCCGAAGAAGCGGCCAAGAAATCCCAAACCCTAACCACCTCCGCCAAGATCACCGACCTAGTTTCCGAAACCGCCAAGCGATCCCGTGAGTTCGCCGCCGAGGCGTCCAAGAAGGCCGACGAGATCAAGACGGCGGCGCTTAAGCAGGCCGATCAGATCAAGTCCCTCAATGTCTCCGAGATGATACCTCCCCAGCTCGCCTCGCTCTCGATCGTCAACTCCGCCTCCGCCTCGTCCGCCCCTGAGCCGCCGTCGCCGTTGGAGCTCAAGAAGTTTGGTGTCACCGACGATCTCAGAGATTTTGTCCAGGGACTCACTTCCGATACCTTCAAGCATTTTCCGGTCCAAGATGCGGCGGAGGAGGTCTCCGATGTGCCGACGACCGCATCGAATGTAAGGAAAGATCTGACGGAGTGGCAGGAGCGGCATGCAACTTTGGTGCTTACTACTGTCAAGGAAATTTCAAGGCTGAGGTATGAGTTGTGTCCGCGAGTTATGAAAGAAAGAAGATTCTGGAAGATATATTTTACCCTTGTGAGCAGTCATGTGGCTCCATATGAGAAGCAATACATGGAGGAATTGAAGGTCGAGGAAGCGGAGAAACTAAAAGATCATATTGTGAAGCCAACACCTCCTGTTGGAGGAACTGACAAAGCAGAAGGATCTGAAAAGAACACAAAGCCTTTAGTTTCGAAATCATCGTCAGCTGAACAGGACTTGGATAGTTTCCTTTTGGGTGATCTTGAAGACAGTGATGGGGGTCCGGATGATCGTGATGATGGTGATCGGAGCTTTGATGATGATTTTGACAAGATCGACAATTCGGATGTCGAAGATGAGAAGCACGAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

297

Amino Acids

33.13

Weight (kDa)

4.91

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 147 - 194 1.9e-11 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 457
AccII CGCG 1 cut(s) 523
AccIII TCCGGA 1 cut(s) 796
AclWI GGATC 2 cut(s) 108, 703
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 492
AcyI GRCGYC 1 cut(s) 137
AfiI CCNNNNNNNGG 3 cut(s) 385, 671, 674
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 4 cut(s) 364, 498, 616, 779
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 4 cut(s) 229, 298, 740, 825
AluI AGCT 4 cut(s) 229, 298, 740, 825
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 211, 403
AlwI GGATC 2 cut(s) 108, 703
Aor13HI TCCGGA 1 cut(s) 796
AoxI GGCC 3 cut(s) 45, 147, 180
ApoI RAATTY 1 cut(s) 492
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 376, 794
AsuHPI GGTGA 4 cut(s) 76, 307, 782, 827
AsuII TTCGAA 1 cut(s) 725
AvaII GGWCC 2 cut(s) 376, 794
BanII GRGCYC 1 cut(s) 300
BauI CACGAG 1 cut(s) 878
BbsI GAAGAC 3 cut(s) 12, 32, 786
Bbv12I GWGCWC 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 503
BccI CCATC 2 cut(s) 782, 806
BceAI ACGGC 3 cut(s) 180, 268, 274
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 211, 403
BfaI CTAG 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 173
BfrI CTTAAG 1 cut(s) 173
BglI GCCNNNNNGGC 1 cut(s) 134
BglII AGATCT 1 cut(s) 436
BisI GCNGC 6 cut(s) 45, 129, 168, 281, 387, 458
BlsI GCNGC 6 cut(s) 46, 130, 169, 282, 388, 459
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 2 cut(s) 376, 794
BmgT120I GGNCC 2 cut(s) 376, 794
BmiI GGNNCC 2 cut(s) 585, 795
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 2 cut(s) 373, 428
BpiI GAAGAC 3 cut(s) 12, 32, 786
BplI GAGNNNNNCTC 2 cut(s) 383, 415
Bpu10I CCTNAGC 2 cut(s) 276, 503
Bpu14I TTCGAA 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 403
BsaJI CCNNGG 2 cut(s) 132, 340
BsaWI WCCGGW 2 cut(s) 373, 796
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 385, 671, 674
Bse8I GATNNNNATC 1 cut(s) 816
BseAI TCCGGA 1 cut(s) 796
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 132, 340
BseGI GGATG 2 cut(s) 805, 865
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 3 cut(s) 385, 671, 674
BseMII CTCAG 3 cut(s) 267, 340, 494
BseRI GAGGAG 1 cut(s) 407
BseYI CCCAGC 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 523
Bsh1285I CGRYCG 2 cut(s) 246, 417
BshFI GGCC 3 cut(s) 47, 149, 182
BsiEI CGRYCG 2 cut(s) 246, 417
BsiHKAI GWGCWC 1 cut(s) 300
BsiSI CCGG 2 cut(s) 374, 797
BslFI GGGAC 2 cut(s) 181, 357
BslI CCNNNNNNNGG 3 cut(s) 385, 671, 674
BsmAI GTCTC 2 cut(s) 211, 403
BsmFI GGGAC 2 cut(s) 181, 357
BsnI GGCC 3 cut(s) 47, 149, 182
Bso31I GGTCTC 1 cut(s) 403
Bsp119I TTCGAA 1 cut(s) 725
Bsp1286I GDGCHC 1 cut(s) 300
Bsp13I TCCGGA 1 cut(s) 796
BspANI GGCC 3 cut(s) 47, 149, 182
BspCNI CTCAG 3 cut(s) 268, 339, 495
BspEI TCCGGA 1 cut(s) 796
BspFNI CGCG 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 585, 795
BspPI GGATC 2 cut(s) 108, 703
BspT104I TTCGAA 1 cut(s) 725
BspTI CTTAAG 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 403
BsrBI CCGCTC 1 cut(s) 457
BssECI CCNNGG 2 cut(s) 132, 340
BssNI GRCGYC 1 cut(s) 137
BssSI CACGAG 1 cut(s) 878
Bst2BI CACGAG 1 cut(s) 878
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 484, 785
BstACI GRCGYC 1 cut(s) 137
BstAFI CTTAAG 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 725
BstC8I GCNNGC 4 cut(s) 21, 180, 231, 462
BstDEI CTNAG 3 cut(s) 276, 326, 503
BstENI CCTNNNNNAGG 1 cut(s) 672
BstF5I GGATG 2 cut(s) 805, 865
BstFNI CGCG 1 cut(s) 523
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstMAI GTCTC 2 cut(s) 211, 403
BstMCI CGRYCG 2 cut(s) 246, 417
BstMWI GCNNNNNNNGC 7 cut(s) 41, 134, 235, 269, 286, 295, 457
BstNI CCWGG 1 cut(s) 341
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 339
BstUI CGCG 1 cut(s) 523
BstV2I GAAGAC 3 cut(s) 12, 32, 786
BstX2I RGATCY 2 cut(s) 436, 695
BstYI RGATCY 2 cut(s) 436, 695
BsuRI GGCC 3 cut(s) 47, 149, 182
BtsCI GGATG 2 cut(s) 805, 865
BtsIMutI CAGTG 1 cut(s) 790
Cac8I GCNNGC 4 cut(s) 21, 180, 231, 462
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 376, 794
CseI GACGC 1 cut(s) 126
CviAII CATG 3 cut(s) 461, 578, 604
DdeI CTNAG 3 cut(s) 276, 326, 503
EaeI YGGCCR 1 cut(s) 45
EciI GGCGGA 5 cut(s) 64, 244, 250, 259, 404
Ecl136II GAGCTC 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 403
Eco47I GGWCC 2 cut(s) 376, 794
Eco53kI GAGCTC 1 cut(s) 298
EcoICRI GAGCTC 1 cut(s) 298
EcoNI CCTNNNNNAGG 1 cut(s) 672
EcoRII CCWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 300
FaeI CATG 3 cut(s) 464, 581, 607
FaqI GGGAC 2 cut(s) 181, 357
FatI CATG 3 cut(s) 460, 577, 603
FauNDI CATATG 1 cut(s) 589
Fnu4HI GCNGC 6 cut(s) 45, 129, 168, 281, 387, 458
FokI GGATG 2 cut(s) 812, 872
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 6 cut(s) 45, 129, 168, 281, 387, 458
FspBI CTAG 1 cut(s) 92
GlaI GCGC 1 cut(s) 171
GluI GCNGC 6 cut(s) 45, 129, 168, 281, 387, 458
GsaI CCCAGC 1 cut(s) 229
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 3 cut(s) 47, 149, 182
HapII CCGG 2 cut(s) 374, 797
HgaI GACGC 1 cut(s) 126
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 3 cut(s) 464, 581, 607
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 2 cut(s) 345, 543
HpaII CCGG 2 cut(s) 374, 797
HphI GGTGA 4 cut(s) 76, 307, 782, 827
Hpy166II GTNNAC 1 cut(s) 250
Hpy188III TCNNGA 7 cut(s) 160, 241, 301, 547, 776, 797, 806
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 4 cut(s) 155, 289, 323, 415
HpyAV CCTTC 5 cut(s) 40, 139, 370, 610, 686
HpyCH4III ACNGT 2 cut(s) 484, 785
HpyCH4V TGCA 1 cut(s) 464
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 134, 235, 269, 286, 295, 457
HpyF3I CTNAG 3 cut(s) 276, 326, 503
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 3 cut(s) 464, 581, 607
HspAI GCGC 1 cut(s) 170
Kpn2I TCCGGA 1 cut(s) 796
LmnI GCTCC 4 cut(s) 295, 454, 589, 822
LweI GCATC 2 cut(s) 373, 428
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 313
MbiI CCGCTC 1 cut(s) 457
MboII GAAGA 7 cut(s) 17, 37, 50, 552, 562, 791, 878
MflI RGATCY 2 cut(s) 436, 695
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 3 cut(s) 492, 611, 853
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 2 cut(s) 273, 652
MroI TCCGGA 1 cut(s) 796
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 740
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 2 cut(s) 374, 797
MspR9I CCNGG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 341
MvnI CGCG 1 cut(s) 523
MwoI GCNNNNNNNGC 7 cut(s) 41, 134, 235, 269, 286, 295, 457
NdeI CATATG 1 cut(s) 589
NlaIII CATG 3 cut(s) 464, 581, 607
NlaIV GGNNCC 2 cut(s) 585, 795
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 1 cut(s) 464
NspV TTCGAA 1 cut(s) 725
PaeI GCATGC 1 cut(s) 464
PcsI WCGNNNNNNNCGW 2 cut(s) 419, 731
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 543
PkrI GCNGC 6 cut(s) 46, 130, 169, 282, 388, 459
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 339
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 585, 795
PspPI GGNCC 2 cut(s) 376, 794
PsuI RGATCY 2 cut(s) 436, 695
PvuI CGATCG 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 740
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 6 cut(s) 45, 129, 168, 281, 387, 458
Sau96I GGNCC 2 cut(s) 376, 794
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 300
SfaNI GCATC 2 cut(s) 373, 428
SfuI TTCGAA 1 cut(s) 725
SinI GGWCC 2 cut(s) 376, 794
SmlI CTYRAG 2 cut(s) 173, 299
SmoI CTYRAG 2 cut(s) 173, 299
SphI GCATGC 1 cut(s) 464
Sse9I AATT 3 cut(s) 492, 611, 853
SspMI CTAG 1 cut(s) 92
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 484, 785
TaqI TCGA 6 cut(s) 242, 422, 621, 725, 849, 864
TasI AATT 3 cut(s) 492, 611, 853
TauI GCSGC 6 cut(s) 47, 131, 170, 283, 389, 460
TfiI GAWTC 1 cut(s) 543
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 790
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 545
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 1 cut(s) 790
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 376, 794
XagI CCTNNNNNAGG 1 cut(s) 672
XapI RAATTY 1 cut(s) 492
XceI RCATGY 1 cut(s) 464
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.