Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003017

Physical Location & Seq

Genomic Coordinates Reverse (-)

1157709 .. 1159564

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCCAACTGCTGAATATTCTCATAGGGGTGGGTTTCTAAATAGGCAATTAACCGTGTATCATGCTGCGTTCCATGCTTGCGCAGACCTCAGGAATGTAGAGGTGATGGAAGCTCTTCAGGAGATGCTAGCAAAGGACGGAAAAGTTCCTGATTTATTTATTGTGTTGCAAATAATGAGGTGTTATCTACACTCAGGGGACATTGACCGTGGTGTTCAAACTTTTGAAGACTATATGAAGTCAGGAAAGCCTCCTGTAGTAGAACTATATACGACGCTTGTGGAGGGGGCCATGATTGGATATACTCCCAAGGGAATGAAAATTGCCGAAGAAACACTGGTGAATATGAACTCCCGAAGCTTTTTCTTGAGTCCGAAAATGGGGAGTGATCTTCTCCTTGCAGCTGCTGGTGACGAGACCGGAGGTTATAGCGTTGCCAACTATATATGGGACCTGATGGATGCACGTAAAATAGTTCCGCAATTTCTTTCCGTAGAAGCATATTACAAGGGCTTAAAAAAACGTGAGATTCCTGAAGACGATCCACGACTGCAACATGTTACAAAGACTTACAATGACCTTCGCGACAGAAGAGGGCCTGGACGACCTATTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

206

Amino Acids

23.21

Weight (kDa)

6.53

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35850
fragaria_vesca	FvH4_6g51990
malus_domestica	MD09G1021100.v1.1 MD09G1021300.v1.1 MD17G1021300.v1.1
prunus_persica	Prupe.3G295200_v2.0.a1 Prupe.3G295200_v2.0.a1
pyrus_communis	pycom111g01770 pycom17g01800
rosa_chinensis	RchiOBHm_Chr2g0173461 RchiOBHm_Chr6g0291191
rosa_laevigata	RLG00000022192
rosa_multiflora	Rmu_sc0000580.1_g000120 Rmu_sc0015463.1_g000007 Rmu_sc0028728.1_g000001 Rmu_ssc0000467.1_g000039
rosa_roxburghii	Rroxscaffold_2G00078830 Rroxscaffold_2G00079350 Rroxscaffold_2G00084510
rosa_rugosa	Rorug02G0525500 Rorug02G0568900 Rorug02G0569200 Rorug02G0569500 Rorug02G0570700
rosa_samantha	Rh2AG521200 Rh2AG649100 Rh2BG659700 Rh2CG574600 Rh2CG624900 Rh2DG674800 Rh3DG228100 Rh4CG014600 Rh4CG314700 Rh4DG296000 Rh6AG277500 Rh6AG329100 Rh7BG450100
rosa_wichuraiana	Rw2G053290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	82
AccII	CGCG	1 cut(s)	585
AciI	CCGC	1 cut(s)	479
AclWI	GGATC	1 cut(s)	536
AcuI	CTGAAG	2 cut(s)	101, 555
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	2 cut(s)	218, 227
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	3 cut(s)	113, 360, 404
AluI	AGCT	3 cut(s)	113, 360, 404
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	1 cut(s)	536
AlwNI	CAGNNNCTG	1 cut(s)	407
AoxI	GGCC	2 cut(s)	288, 596
ApeKI	GCWGC	3 cut(s)	65, 401, 404
Asp700I	GAANNNNTTC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	3 cut(s)	288, 451, 596
AsuHPI	GGTGA	3 cut(s)	115, 352, 422
AsuNHI	GCTAGC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	451
AxyI	CCTNAGG	1 cut(s)	89
BbsI	GAAGAC	2 cut(s)	234, 543
BbvI	GCAGC	3 cut(s)	52, 391, 413
BccI	CCATC	2 cut(s)	100, 451
BciT130I	CCWGG	1 cut(s)	600
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	3 cut(s)	66, 402, 405
BlsI	GCNGC	3 cut(s)	67, 403, 406
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	3 cut(s)	288, 451, 596
BmiI	GGNNCC	2 cut(s)	289, 452
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	2 cut(s)	114, 451
BmtI	GCTAGC	1 cut(s)	131
BpiI	GAAGAC	2 cut(s)	234, 543
BpuEI	CTTGAG	1 cut(s)	388
BsaAI	YACGTR	1 cut(s)	467
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	208, 309
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	342
Bse21I	CCTNAGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	208, 309
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	103, 207
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	52, 391, 413
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	2 cut(s)	290, 598
BsiSI	CCGG	1 cut(s)	420
BslFI	GGGAC	2 cut(s)	212, 464
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	410
BsmFI	GGGAC	2 cut(s)	212, 464
BsnI	GGCC	2 cut(s)	290, 598
Bso31I	GGTCTC	1 cut(s)	410
Bsp143I	GATC	2 cut(s)	388, 541
Bsp68I	TCGCGA	1 cut(s)	585
BspACI	CCGC	1 cut(s)	479
BspANI	GGCC	2 cut(s)	290, 598
BspCNI	CTCAG	2 cut(s)	102, 206
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	289, 452
BspOI	GCTAGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	536
BspQI	GCTCTTC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	208, 309
BssMI	GATC	2 cut(s)	388, 541
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	55, 209
Bst6I	CTCTTC	2 cut(s)	120, 586
BstBAI	YACGTR	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	79, 129
BstDEI	CTNAG	2 cut(s)	89, 193
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	2 cut(s)	391, 544
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	2 cut(s)	388, 541
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	598
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	3 cut(s)	52, 391, 413
BstV2I	GAAGAC	2 cut(s)	234, 543
Bsu36I	CCTNAGG	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	290, 598
BtgI	CCRYGG	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	335
BtuMI	TCGCGA	1 cut(s)	585
Cac8I	GCNNGC	2 cut(s)	79, 129
CaiI	CAGNNNCTG	1 cut(s)	407
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	3 cut(s)	288, 451, 596
CseI	GACGC	1 cut(s)	283
CviAII	CATG	4 cut(s)	62, 74, 292, 557
CviJI	RGCY	7 cut(s)	113, 250, 290, 360, 404, 513, 598
CviKI_1	RGCY	7 cut(s)	113, 250, 290, 360, 404, 513, 598
DdeI	CTNAG	2 cut(s)	89, 193
DpnI	GATC	2 cut(s)	390, 543
DpnII	GATC	2 cut(s)	388, 541
Eam1104I	CTCTTC	2 cut(s)	120, 586
EarI	CTCTTC	2 cut(s)	120, 586
Eco130I	CCWWGG	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	2 cut(s)	101, 555
Eco81I	CCTNAGG	1 cut(s)	89
EcoO109I	RGGNCCY	2 cut(s)	451, 596
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	4 cut(s)	65, 77, 295, 560
FaqI	GGGAC	2 cut(s)	212, 464
FatI	CATG	4 cut(s)	61, 73, 291, 556
Fnu4HI	GCNGC	3 cut(s)	66, 402, 405
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	3 cut(s)	66, 402, 405
FspBI	CTAG	1 cut(s)	128
FspI	TGCGCA	1 cut(s)	82
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	3 cut(s)	66, 402, 405
HaeIII	GGCC	2 cut(s)	290, 598
HapII	CCGG	1 cut(s)	420
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	65, 77, 295, 560
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	2 cut(s)	370, 529
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	3 cut(s)	115, 352, 422
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	8 cut(s)	91, 119, 149, 243, 354, 367, 533, 584
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	590
HpyCH4III	ACNGT	2 cut(s)	55, 209
HpyCH4IV	ACGT	2 cut(s)	466, 523
HpyCH4V	TGCA	4 cut(s)	169, 401, 464, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	2 cut(s)	89, 193
HpySE526I	ACGT	2 cut(s)	466, 523
Hsp92II	CATG	4 cut(s)	65, 77, 295, 560
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	388, 541
LguI	GCTCTTC	1 cut(s)	120
Lsp1109I	GCAGC	3 cut(s)	52, 391, 413
LweI	GCATC	2 cut(s)	114, 451
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	2 cut(s)	466, 523
MaeIII	GTNAC	2 cut(s)	410, 559
MalI	GATC	2 cut(s)	390, 543
MboI	GATC	2 cut(s)	388, 541
MboII	GAAGA	6 cut(s)	107, 239, 341, 383, 548, 603
MluCI	AATT	3 cut(s)	47, 321, 482
MlyI	GAGTC	1 cut(s)	379
MnlI	CCTC	7 cut(s)	94, 98, 171, 261, 277, 416, 587
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	2 cut(s)	50, 515
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	2 cut(s)	388, 541
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	4 cut(s)	65, 77, 295, 560
NlaIV	GGNNCC	2 cut(s)	289, 452
NmuCI	GTSAC	1 cut(s)	410
NruI	TCGCGA	1 cut(s)	585
NsbI	TGCGCA	1 cut(s)	82
NspI	RCATGY	1 cut(s)	560
PciI	ACATGT	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	529
PkrI	GCNGC	3 cut(s)	67, 403, 406
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
Ppu21I	YACGTR	1 cut(s)	467
PpuMI	RGGWCCY	1 cut(s)	451
PscI	ACATGT	1 cut(s)	556
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	289, 452
PspPI	GGNCC	3 cut(s)	288, 451, 596
PspPPI	RGGWCCY	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	404
RruI	TCGCGA	1 cut(s)	585
RseI	CAYNNNNRTG	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	50, 515
SatI	GCNGC	3 cut(s)	66, 402, 405
Sau3AI	GATC	2 cut(s)	388, 541
Sau96I	GGNCC	3 cut(s)	288, 451, 596
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	600
SfaNI	GCATC	2 cut(s)	114, 451
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	3 cut(s)	47, 321, 482
SsiI	CCGC	1 cut(s)	479
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	598
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	55, 209
TaiI	ACGT	2 cut(s)	469, 526
TasI	AATT	3 cut(s)	47, 321, 482
TfiI	GAWTC	1 cut(s)	529
Tru1I	TTAA	2 cut(s)	50, 515
Tru9I	TTAA	2 cut(s)	50, 515
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	3 cut(s)	65, 401, 404
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	3 cut(s)	251, 332, 362
TspGWI	ACGGA	2 cut(s)	153, 481
TspRI	CASTG	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	451
XceI	RCATGY	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.