Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Reverse (-)

1794924 .. 1797820

Gene Structure 2897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCGGTTGAGAGTACGATAAGTTTACTGTTGAAATTTCTTCAAGGTCTGATAACTGTCATGTTATCAAAAGGTAGAAACGACATTGTATATTTTTCATATTCGCGAACAAACCCCACAGTGGTTTGTCATATTTGGCACTCCAAGCGTGCCACGACTCACGTGCGTCGGAGGACACGCTTCCCCCTACGCCGCCTTCTCCCCTCACCTGCAATGGCGAATCCAGCTGAAAACCCAGCAATGGAAACTCCATACCCAGCAACTCCTTCTTCTTCTTGTTCCTCTCCTTATACTCCAAAACCAGAGAACCCAGCACCCCAAAGCCCCTCACCGTCACCGGCACTAGCATCAACGGCGAGGCTGTGGAGGCCCACCGCGCAGAGAAACCTGAGAAATCAATGGCCCAAGTTAGCTTCTTACAGACAGCAATGGGCTTCTTCTTCTTCCACTGCAAGATCACACGCCACCTCTCTCGTAAACTCGTATCTTTCTCTCACATACATGCCTTCAATGGAGTTGGGAGTTCTGAGTGATATGCCTAATATACGAAAGAAAGCTTGCCAGAAATTATTTAAGCAGCAGGAGCTTCATCGAAGCGGACTTTTATCCTCGTACAAGGACTTGGTTTCAGTTGTAACTCACATGGTCCAAACTAGTAGATCCATGAGATGCTTTGTCAAGGGGGCAACCAATAATCCGCTCGTACAATCTTCTGGCTGTTCTGAAGATAAGAATGATCCCGGAGATGGTGGCGGAATTCCAGTCTTTGCATTTTGGTCCATCTCTTGCTTTGAAAAACTGGCGGAGGAGCTTGTCCAGATGTTTATATTGGAGCTAAATTTGAAGCGTTTGGTTGTAGTGGAATTACTTTCAATTAGTTGTGACGTTCCAACAGTAAACAGTTTGGATTGGTCGGATGAGCTTTATCCGGGAGAATTTGGTGAGTTGAGTATGTGCAACTTATATGGTGAGGAGACTTGTAAGCCAATCTATCCAAGATTGGATGGTCAGAAATTTGAAATGCCAGCTGCACGATGTAATCAGCAGCCAGATCATGATGTTTTGCAGGTTTATCTAACGACGTGGATTGCAGAGGTGAATATAGACGCGCACAGGGTGGACGAAATATTTGCGGAAGTTGGGGAAGAAATGCATGTTAGGATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

43.66

Weight (kDa)

8.27

Isoelectric Point (pI)

62.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	217
Acc36I	ACCTGC	2 cut(s)	217, 1057
AccBSI	CCGCTC	1 cut(s)	700
AccII	CGCG	3 cut(s)	106, 377, 1109
AciI	CCGC	8 cut(s)	5, 193, 375, 597, 698, 753, 803, 1133
AclWI	GGATC	2 cut(s)	654, 731
AcsI	RAATTY	5 cut(s)	35, 756, 838, 935, 1013
AcuI	CTGAAG	1 cut(s)	744
AcvI	CACGTG	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	1117
AfaI	GTAC	3 cut(s)	16, 614, 705
AfiI	CCNNNNNNNGG	3 cut(s)	121, 241, 746
AgsI	TTSAA	7 cut(s)	34, 44, 510, 794, 844, 873, 1019
AhlI	ACTAGT	1 cut(s)	653
AjiI	CACGTC	1 cut(s)	1083
AluBI	AGCT	8 cut(s)	227, 413, 557, 586, 811, 835, 922, 1028
AluI	AGCT	8 cut(s)	227, 413, 557, 586, 811, 835, 922, 1028
Alw26I	GTCTC	1 cut(s)	968
AlwI	GGATC	2 cut(s)	654, 731
AoxI	GGCC	2 cut(s)	368, 401
ApeKI	GCWGC	3 cut(s)	577, 1028, 1045
ApoI	RAATTY	5 cut(s)	35, 756, 838, 935, 1013
ArsI	GACNNNNNNTTYG	2 cut(s)	1112, 1144
AspLEI	GCGC	2 cut(s)	379, 1111
AspS9I	GGNCC	4 cut(s)	369, 402, 646, 777
AsuC2I	CCSGG	2 cut(s)	741, 930
AsuHPI	GGTGA	6 cut(s)	198, 321, 327, 953, 980, 1108
AvaII	GGWCC	2 cut(s)	646, 777
BbrPI	CACGTG	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	589, 1015, 1057
BccI	CCATC	3 cut(s)	740, 788, 998
BceAI	ACGGC	1 cut(s)	369
BcgI	CGANNNNNNTGC	4 cut(s)	145, 179, 1112, 1146
BcnI	CCSGG	2 cut(s)	741, 930
BcoDI	GTCTC	1 cut(s)	968
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	2 cut(s)	344, 654
BfuAI	ACCTGC	2 cut(s)	217, 1057
BisI	GCNGC	4 cut(s)	193, 578, 1029, 1046
BlsI	GCNGC	4 cut(s)	194, 579, 1030, 1047
Bme1390I	CCNGG	2 cut(s)	741, 930
Bme18I	GGWCC	2 cut(s)	646, 777
BmgBI	CACGTC	1 cut(s)	1083
BmgT120I	GGNCC	4 cut(s)	369, 402, 646, 777
BmrFI	CCNGG	2 cut(s)	741, 930
BmsI	GCATC	2 cut(s)	356, 659
BpuMI	CCSGG	2 cut(s)	741, 930
BsaAI	YACGTR	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 241, 746
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	2 cut(s)	761, 804
Bse3DI	GCAATG	3 cut(s)	219, 246, 434
BseGI	GGATG	2 cut(s)	922, 1009
BseLI	CCNNNNNNNGG	3 cut(s)	121, 241, 746
BseMI	GCAATG	3 cut(s)	219, 246, 434
BseMII	CTCAG	2 cut(s)	380, 518
BseNI	ACTGG	2 cut(s)	761, 804
BseRI	GAGGAG	2 cut(s)	821, 986
BseXI	GCAGC	3 cut(s)	589, 1015, 1057
BseYI	CCCAGC	3 cut(s)	235, 256, 310
BsgI	GTGCAG	1 cut(s)	1014
Bsh1236I	CGCG	3 cut(s)	106, 377, 1109
BshFI	GGCC	2 cut(s)	370, 403
BsiSI	CCGG	3 cut(s)	338, 741, 929
BslI	CCNNNNNNNGG	3 cut(s)	121, 241, 746
BsmAI	GTCTC	1 cut(s)	968
BsnI	GGCC	2 cut(s)	370, 403
Bsp143I	GATC	4 cut(s)	455, 659, 736, 1051
Bsp68I	TCGCGA	1 cut(s)	106
BspACI	CCGC	8 cut(s)	5, 193, 375, 597, 698, 753, 803, 1133
BspANI	GGCC	2 cut(s)	370, 403
BspCNI	CTCAG	2 cut(s)	381, 519
BspFNI	CGCG	3 cut(s)	106, 377, 1109
BspHI	TCATGA	2 cut(s)	1054, 1166
BspMI	ACCTGC	2 cut(s)	217, 1057
BspPI	GGATC	2 cut(s)	654, 731
BsrBI	CCGCTC	1 cut(s)	700
BsrDI	GCAATG	3 cut(s)	219, 246, 434
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	761, 804
BssAI	RCCGGY	1 cut(s)	337
BssMI	GATC	4 cut(s)	455, 659, 736, 1051
Bst4CI	ACNGT	6 cut(s)	30, 58, 121, 333, 895, 902
BstBAI	YACGTR	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	150, 559, 1026
BstDEI	CTNAG	2 cut(s)	389, 527
BstF5I	GGATG	2 cut(s)	922, 1009
BstFNI	CGCG	3 cut(s)	106, 377, 1109
BstHHI	GCGC	2 cut(s)	379, 1111
BstKTI	GATC	4 cut(s)	458, 662, 739, 1054
BstMAI	GTCTC	1 cut(s)	968
BstMBI	GATC	4 cut(s)	455, 659, 736, 1051
BstMWI	GCNNNNNNNGC	6 cut(s)	145, 224, 353, 367, 376, 583
BstNSI	RCATGY	2 cut(s)	505, 1157
BstSCI	CCNGG	2 cut(s)	739, 928
BstUI	CGCG	3 cut(s)	106, 377, 1109
BstV1I	GCAGC	3 cut(s)	589, 1015, 1057
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuRI	GGCC	2 cut(s)	370, 403
BtrI	CACGTC	1 cut(s)	1083
BtsCI	GGATG	2 cut(s)	922, 1009
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	126, 447
BtuMI	TCGCGA	1 cut(s)	106
BveI	ACCTGC	2 cut(s)	217, 1057
Cac8I	GCNNGC	3 cut(s)	150, 559, 1026
CciI	TCATGA	2 cut(s)	1054, 1166
CfoI	GCGC	2 cut(s)	379, 1111
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	4 cut(s)	369, 402, 646, 777
CseI	GACGC	2 cut(s)	155, 1115
Csp6I	GTAC	3 cut(s)	15, 613, 704
CviAII	CATG	7 cut(s)	61, 502, 643, 664, 1055, 1154, 1167
CviQI	GTAC	3 cut(s)	15, 613, 704
DdeI	CTNAG	2 cut(s)	389, 527
DpnI	GATC	4 cut(s)	457, 661, 738, 1053
DpnII	GATC	4 cut(s)	455, 659, 736, 1051
DraIII	CACNNNGTG	1 cut(s)	1117
EciI	GGCGGA	2 cut(s)	768, 818
Eco47I	GGWCC	2 cut(s)	646, 777
Eco57I	CTGAAG	1 cut(s)	744
Eco72I	CACGTG	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	756
EcoT22I	ATGCAT	1 cut(s)	1155
FaeI	CATG	7 cut(s)	64, 505, 646, 667, 1058, 1157, 1170
FatI	CATG	7 cut(s)	60, 501, 642, 663, 1054, 1153, 1166
Fnu4HI	GCNGC	4 cut(s)	193, 578, 1029, 1046
FokI	GGATG	2 cut(s)	929, 1016
Fsp4HI	GCNGC	4 cut(s)	193, 578, 1029, 1046
FspBI	CTAG	2 cut(s)	344, 654
GlaI	GCGC	2 cut(s)	378, 1110
GluI	GCNGC	4 cut(s)	193, 578, 1029, 1046
GsaI	CCCAGC	3 cut(s)	239, 260, 314
HaeIII	GGCC	2 cut(s)	370, 403
HapII	CCGG	3 cut(s)	338, 741, 929
HgaI	GACGC	2 cut(s)	155, 1115
HhaI	GCGC	2 cut(s)	379, 1111
Hin1II	CATG	7 cut(s)	64, 505, 646, 667, 1058, 1157, 1170
Hin6I	GCGC	2 cut(s)	377, 1109
HinP1I	GCGC	2 cut(s)	377, 1109
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	2 cut(s)	157, 220
HpaII	CCGG	3 cut(s)	338, 741, 929
HphI	GGTGA	6 cut(s)	198, 321, 327, 953, 980, 1108
Hpy166II	GTNNAC	4 cut(s)	26, 478, 898, 1120
Hpy188I	TCNGA	6 cut(s)	51, 171, 528, 724, 916, 1011
Hpy188III	TCNNGA	4 cut(s)	105, 817, 1055, 1167
Hpy8I	GTNNAC	4 cut(s)	26, 478, 898, 1120
Hpy99I	CGWCG	2 cut(s)	171, 1084
HpyAV	CCTTC	3 cut(s)	206, 276, 516
HpyCH4III	ACNGT	6 cut(s)	30, 58, 121, 333, 895, 902
HpyCH4IV	ACGT	3 cut(s)	162, 885, 1082
HpyCH4V	TGCA	8 cut(s)	212, 452, 770, 957, 1031, 1066, 1091, 1153
HpyF10VI	GCNNNNNNNGC	6 cut(s)	145, 224, 353, 367, 376, 583
HpyF3I	CTNAG	2 cut(s)	389, 527
HpySE526I	ACGT	3 cut(s)	162, 885, 1082
Hsp92II	CATG	7 cut(s)	64, 505, 646, 667, 1058, 1157, 1170
HspAI	GCGC	2 cut(s)	377, 1109
Kzo9I	GATC	4 cut(s)	455, 659, 736, 1051
LmnI	GCTCC	3 cut(s)	583, 808, 832
Lsp1109I	GCAGC	3 cut(s)	589, 1015, 1057
LweI	GCATC	2 cut(s)	356, 659
MaeI	CTAG	2 cut(s)	344, 654
MaeII	ACGT	3 cut(s)	162, 885, 1082
MaeIII	GTNAC	3 cut(s)	333, 634, 881
MalI	GATC	4 cut(s)	457, 661, 738, 1053
MbiI	CCGCTC	1 cut(s)	700
MboI	GATC	4 cut(s)	455, 659, 736, 1051
MboII	GAAGA	9 cut(s)	32, 261, 264, 429, 432, 435, 702, 737, 1157
MflI	RGATCY	1 cut(s)	659
MluCI	AATT	8 cut(s)	35, 566, 756, 838, 863, 873, 935, 1013
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	3 cut(s)	149, 894, 914
Mph1103I	ATGCAT	1 cut(s)	1155
MseI	TTAA	1 cut(s)	573
MslI	CAYNNNNRTG	1 cut(s)	500
MspA1I	CMGCKG	2 cut(s)	227, 1028
MspI	CCGG	3 cut(s)	338, 741, 929
MspR9I	CCNGG	2 cut(s)	741, 930
MvnI	CGCG	3 cut(s)	106, 377, 1109
MwoI	GCNNNNNNNGC	6 cut(s)	145, 224, 353, 367, 376, 583
NciI	CCSGG	2 cut(s)	741, 930
NdeII	GATC	4 cut(s)	455, 659, 736, 1051
NlaIII	CATG	7 cut(s)	64, 505, 646, 667, 1058, 1157, 1170
NmuCI	GTSAC	2 cut(s)	333, 881
NruI	TCGCGA	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	1155
NspI	RCATGY	2 cut(s)	505, 1157
PagI	TCATGA	2 cut(s)	1054, 1166
PaqCI	CACCTGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	220
PfoI	TCCNGGA	2 cut(s)	739, 928
PkrI	GCNGC	4 cut(s)	194, 579, 1030, 1047
PleI	GAGTC	1 cut(s)	151
PmaCI	CACGTG	1 cut(s)	163
PmlI	CACGTG	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	163
PspCI	CACGTG	1 cut(s)	163
PspFI	CCCAGC	3 cut(s)	235, 256, 310
PspPI	GGNCC	4 cut(s)	369, 402, 646, 777
PsuI	RGATCY	1 cut(s)	659
PvuII	CAGCTG	2 cut(s)	227, 1028
RruI	TCGCGA	1 cut(s)	106
RsaI	GTAC	3 cut(s)	16, 614, 705
RsaNI	GTAC	3 cut(s)	15, 613, 704
RseI	CAYNNNNRTG	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	4 cut(s)	193, 578, 1029, 1046
Sau3AI	GATC	4 cut(s)	455, 659, 736, 1051
Sau96I	GGNCC	4 cut(s)	369, 402, 646, 777
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	2 cut(s)	741, 930
SfaNI	GCATC	2 cut(s)	356, 659
SinI	GGWCC	2 cut(s)	646, 777
SmiMI	CAYNNNNRTG	1 cut(s)	500
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	8 cut(s)	35, 566, 756, 838, 863, 873, 935, 1013
SsiI	CCGC	8 cut(s)	5, 193, 375, 597, 698, 753, 803, 1133
SspI	AATATT	1 cut(s)	1128
SspMI	CTAG	2 cut(s)	344, 654
StyD4I	CCNGG	2 cut(s)	739, 928
TaaI	ACNGT	6 cut(s)	30, 58, 121, 333, 895, 902
TaiI	ACGT	3 cut(s)	165, 888, 1085
TaqI	TCGA	1 cut(s)	592
TasI	AATT	8 cut(s)	35, 566, 756, 838, 863, 873, 935, 1013
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	2 cut(s)	126, 454
TseFI	GTSAC	2 cut(s)	333, 881
TseI	GCWGC	3 cut(s)	577, 1028, 1045
Tsp45I	GTSAC	2 cut(s)	333, 881
TspDTI	ATGAA	3 cut(s)	87, 578, 1155
TspRI	CASTG	2 cut(s)	126, 454
VpaK11BI	GGWCC	2 cut(s)	646, 777
XapI	RAATTY	5 cut(s)	35, 756, 838, 935, 1013
XceI	RCATGY	2 cut(s)	505, 1157
XspI	CTAG	2 cut(s)	344, 654
Zsp2I	ATGCAT	1 cut(s)	1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.