Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Forward (+)

2940487 .. 2942890

Gene Structure 2404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGGTTTGAAACGGTGGCGCCCAATCGCAAAGGCAGCAAGGAGTTTCTGGCATTGGCGGAGGAGACGAATTCGAAAAGCAAGACCAGGAAGGGCCGGCGGCGTCAGCGGAAGATGTCGCCGGTTCAGAAGCTGTACGAGACTTGCAAGGAAGTCTTTTCGTTTTGTGGGGCCGGGGTCATTCCCCCCGCTGATGATATCCAACGGCTATCCTCTGTTTTGGATGCCATGAACCCTGCTGATGTCGGCCTCACTCCTGATTTGCCGTACTTCAGTATGACGGTGGCTAGACGAAGCCCGGTTATAACATACCTGCATCTTTACGAGTGCGAAAAATTTTCAGTAAGTTTCTTCCAGATGGGGATATTTTGCTTGCCGCCTTCGGGTGTCTTACCGCTTCATAATCACCCGGGAATGACGGTTTTCAGTAAGCTTCTGTTTGGGACGATGCACATCAAGTCCTACGATTGGGTGGCTGGTGCCCCGGAGAAAACATTGGCAAGTGCGAACCCTTCACTTGTTGCACCGCCCGGTGTTCATCTGGCTAAAGTTAAGGTTGACGCCGATTTCACTGCTCCTTGCGAACCATCCATCCTCTATCCAGCTGATGGAGGCAACATGCATTGCTTCACAGCAGTGACAGCATGTGCAGTGCTCGATGTGCTTGGCCCCCCATATTCTGATCCCGACGGCAGGCACTGCCAATACTACCTTGATTACCCATTCTCTCGCTTCCCAGATGGGGGAGTATCGGTGCCGGAAGATGAGAAAGAAGGCTATGCTTGGCTTGAAGATATAGAGAAACCTGAGGACTTAGCTGTACATGGAGCCATGTACAGAGGCCCAAAAATACAGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

288

Amino Acids

31.63

Weight (kDa)

5.92

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	73 - 284	4.4e-73	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	321
AccB1I	GGYRCC	3 cut(s)	19, 479, 754
AccB7I	CCANNNNNTGG	1 cut(s)	608
AciI	CCGC	7 cut(s)	59, 100, 109, 189, 377, 395, 527
AclWI	GGATC	1 cut(s)	677
AcsI	RAATTY	2 cut(s)	70, 335
AcuI	CTGAAG	1 cut(s)	256
AcyI	GRCGYC	3 cut(s)	20, 103, 561
AfaI	GTAC	4 cut(s)	137, 269, 822, 836
AfiI	CCNNNNNNNGG	6 cut(s)	383, 468, 608, 693, 742, 743
AgsI	TTSAA	2 cut(s)	11, 791
AjnI	CCWGG	1 cut(s)	86
AleI	CACNNNNGTG	1 cut(s)	635
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	4 cut(s)	133, 433, 605, 818
AluI	AGCT	4 cut(s)	133, 433, 605, 818
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	2 cut(s)	59, 134
AlwI	GGATC	1 cut(s)	677
AlwNI	CAGNNNCTG	2 cut(s)	133, 699
Ama87I	CYCGRG	1 cut(s)	409
AoxI	GGCC	5 cut(s)	94, 171, 247, 667, 841
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	2 cut(s)	70, 335
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	4 cut(s)	94, 171, 668, 842
AsuC2I	CCSGG	6 cut(s)	175, 299, 410, 411, 485, 531
AsuHPI	GGTGA	1 cut(s)	398
AsuII	TTCGAA	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	409
AxyI	CCTNAGG	1 cut(s)	807
BaeGI	GKGCMC	1 cut(s)	484
BanI	GGYRCC	3 cut(s)	19, 479, 754
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	5 cut(s)	352, 595, 599, 602, 734
BceAI	ACGGC	3 cut(s)	221, 250, 706
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	1 cut(s)	88
BcnI	CCSGG	6 cut(s)	175, 299, 410, 411, 485, 531
BcoDI	GTCTC	2 cut(s)	59, 134
BfaI	CTAG	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	321
BisI	GCNGC	3 cut(s)	37, 101, 377
BlsI	GCNGC	3 cut(s)	38, 102, 378
Bme1390I	CCNGG	7 cut(s)	88, 175, 299, 410, 411, 485, 531
BmeT110I	CYCGRG	1 cut(s)	409
BmgT120I	GGNCC	4 cut(s)	94, 171, 668, 842
BmiI	GGNNCC	6 cut(s)	21, 172, 481, 670, 756, 829
BmrFI	CCNGG	7 cut(s)	88, 175, 299, 410, 411, 485, 531
BmsI	GCATC	3 cut(s)	214, 325, 438
Bpu14I	TTCGAA	1 cut(s)	74
BpuMI	CCSGG	6 cut(s)	175, 299, 410, 411, 485, 531
BsaBI	GATNNNNATC	1 cut(s)	452
BsaHI	GRCGYC	3 cut(s)	20, 103, 561
BsaJI	CCNNGG	3 cut(s)	174, 409, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	6 cut(s)	383, 468, 608, 693, 742, 743
Bse118I	RCCGGY	2 cut(s)	96, 121
Bse21I	CCTNAGG	1 cut(s)	807
Bse3DI	GCAATG	1 cut(s)	622
Bse8I	GATNNNNATC	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	3 cut(s)	174, 409, 483
BseGI	GGATG	3 cut(s)	229, 587, 591
BseJI	GATNNNNATC	1 cut(s)	452
BseLI	CCNNNNNNNGG	6 cut(s)	383, 468, 608, 693, 742, 743
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	1 cut(s)	798
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	1 cut(s)	48
BsgI	GTGCAG	1 cut(s)	669
BshFI	GGCC	5 cut(s)	96, 173, 249, 669, 843
BshNI	GGYRCC	3 cut(s)	19, 479, 754
BsiHKAI	GWGCWC	1 cut(s)	657
BsiHKCI	CYCGRG	1 cut(s)	409
BsiSI	CCGG	8 cut(s)	97, 122, 174, 299, 410, 485, 531, 758
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	6 cut(s)	383, 468, 608, 693, 742, 743
BsmAI	GTCTC	2 cut(s)	59, 134
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	5 cut(s)	96, 173, 249, 669, 843
BsoBI	CYCGRG	1 cut(s)	409
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	484, 657
Bsp1407I	TGTACA	2 cut(s)	820, 834
Bsp143I	GATC	1 cut(s)	682
BspACI	CCGC	7 cut(s)	59, 100, 109, 189, 377, 395, 527
BspANI	GGCC	5 cut(s)	96, 173, 249, 669, 843
BspCNI	CTCAG	1 cut(s)	799
BspLI	GGNNCC	6 cut(s)	21, 172, 481, 670, 756, 829
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	677
BspT104I	TTCGAA	1 cut(s)	74
BspT107I	GGYRCC	3 cut(s)	19, 479, 754
BsrDI	GCAATG	1 cut(s)	622
BsrFI	RCCGGY	2 cut(s)	96, 121
BsrGI	TGTACA	2 cut(s)	820, 834
BssAI	RCCGGY	2 cut(s)	96, 121
BssECI	CCNNGG	3 cut(s)	174, 409, 483
BssMI	GATC	1 cut(s)	682
BssNI	GRCGYC	3 cut(s)	20, 103, 561
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	3 cut(s)	16, 283, 421
BstACI	GRCGYC	3 cut(s)	20, 103, 561
BstAPI	GCANNNNNTGC	1 cut(s)	699
BstAUI	TGTACA	2 cut(s)	820, 834
BstBI	TTCGAA	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	98, 374, 695
BstDEI	CTNAG	2 cut(s)	807, 814
BstF5I	GGATG	3 cut(s)	229, 587, 591
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	685
BstMAI	GTCTC	2 cut(s)	59, 134
BstMBI	GATC	1 cut(s)	682
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 106, 641, 661, 699
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	2 cut(s)	622, 648
BstSCI	CCNGG	7 cut(s)	86, 173, 297, 408, 409, 483, 529
BstSLI	GKGCMC	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	807
BsuRI	GGCC	5 cut(s)	96, 173, 249, 669, 843
BtsCI	GGATG	3 cut(s)	229, 587, 591
BtsI	GCAGTG	4 cut(s)	570, 642, 657, 697
BtsIMutI	CAGTG	4 cut(s)	570, 642, 657, 697
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	3 cut(s)	98, 374, 695
CaiI	CAGNNNCTG	2 cut(s)	133, 699
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	2 cut(s)	96, 121
Cfr13I	GGNCC	4 cut(s)	94, 171, 668, 842
Cfr9I	CCCGGG	1 cut(s)	409
CseI	GACGC	2 cut(s)	92, 569
Csp6I	GTAC	4 cut(s)	136, 268, 821, 835
CviAII	CATG	5 cut(s)	229, 619, 645, 824, 832
CviQI	GTAC	4 cut(s)	136, 268, 821, 835
DdeI	CTNAG	2 cut(s)	807, 814
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	1 cut(s)	684
DpnII	GATC	1 cut(s)	682
EciI	GGCGGA	1 cut(s)	74
Eco32I	GATATC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	256
Eco81I	CCTNAGG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	409
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	86
EcoRV	GATATC	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	624
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	5 cut(s)	232, 622, 648, 827, 835
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	5 cut(s)	228, 618, 644, 823, 831
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	3 cut(s)	37, 101, 377
FokI	GGATG	3 cut(s)	236, 574, 578
Fsp4HI	GCNGC	3 cut(s)	37, 101, 377
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	3 cut(s)	37, 101, 377
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	5 cut(s)	96, 173, 249, 669, 843
HapII	CCGG	8 cut(s)	97, 122, 174, 299, 410, 485, 531, 758
HgaI	GACGC	2 cut(s)	92, 569
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	3 cut(s)	20, 103, 561
Hin1II	CATG	5 cut(s)	232, 622, 648, 827, 835
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	1 cut(s)	431
HpaII	CCGG	8 cut(s)	97, 122, 174, 299, 410, 485, 531, 758
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	2 cut(s)	129, 682
Hpy188III	TCNNGA	3 cut(s)	257, 355, 686
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	4 cut(s)	85, 390, 522, 767
HpyCH4III	ACNGT	3 cut(s)	16, 283, 421
HpyCH4V	TGCA	6 cut(s)	147, 316, 451, 524, 622, 650
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 106, 641, 661, 699
HpyF3I	CTNAG	2 cut(s)	807, 814
Hsp92I	GRCGYC	3 cut(s)	20, 103, 561
Hsp92II	CATG	5 cut(s)	232, 622, 648, 827, 835
HspAI	GCGC	1 cut(s)	20
KasI	GGCGCC	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	96
KroNI	GCCGGC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	682
LmnI	GCTCC	2 cut(s)	580, 827
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	3 cut(s)	214, 325, 438
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	1 cut(s)	684
MboI	GATC	1 cut(s)	682
MboII	GAAGA	4 cut(s)	124, 343, 773, 803
MhlI	GDGCHC	2 cut(s)	484, 657
MluCI	AATT	3 cut(s)	70, 335, 859
Mly113I	GGCGCC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	7 cut(s)	55, 223, 260, 605, 605, 802, 833
Mph1103I	ATGCAT	1 cut(s)	624
MroNI	GCCGGC	1 cut(s)	96
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	3 cut(s)	109, 191, 605
MspI	CCGG	8 cut(s)	97, 122, 174, 299, 410, 485, 531, 758
MspR9I	CCNGG	7 cut(s)	88, 175, 299, 410, 411, 485, 531
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	5 cut(s)	36, 106, 641, 661, 699
NaeI	GCCGGC	1 cut(s)	98
NarI	GGCGCC	1 cut(s)	20
NciI	CCSGG	6 cut(s)	175, 299, 410, 411, 485, 531
NdeII	GATC	1 cut(s)	682
NgoMIV	GCCGGC	1 cut(s)	96
NlaIII	CATG	5 cut(s)	232, 622, 648, 827, 835
NlaIV	GGNNCC	6 cut(s)	21, 172, 481, 670, 756, 829
NmuCI	GTSAC	1 cut(s)	637
NsiI	ATGCAT	1 cut(s)	624
NspI	RCATGY	2 cut(s)	622, 648
NspV	TTCGAA	1 cut(s)	74
OliI	CACNNNNGTG	1 cut(s)	635
PdiI	GCCGGC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	608
PkrI	GCNGC	3 cut(s)	38, 102, 378
PluTI	GGCGCC	1 cut(s)	23
PsiI	TTATAA	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	6 cut(s)	21, 172, 481, 670, 756, 829
PspPI	GGNCC	4 cut(s)	94, 171, 668, 842
PstNI	CAGNNNCTG	2 cut(s)	133, 699
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	4 cut(s)	137, 269, 822, 836
RsaNI	GTAC	4 cut(s)	136, 268, 821, 835
RseI	CAYNNNNRTG	1 cut(s)	635
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	3 cut(s)	37, 101, 377
Sau3AI	GATC	1 cut(s)	682
Sau96I	GGNCC	4 cut(s)	94, 171, 668, 842
ScrFI	CCNGG	7 cut(s)	88, 175, 299, 410, 411, 485, 531
SduI	GDGCHC	2 cut(s)	484, 657
SetI	ASST	8 cut(s)	135, 315, 435, 558, 607, 714, 808, 820
SfaNI	GCATC	3 cut(s)	214, 325, 438
SfoI	GGCGCC	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	74
SmaI	CCCGGG	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	635
Sse9I	AATT	3 cut(s)	70, 335, 859
SsiI	CCGC	7 cut(s)	59, 100, 109, 189, 377, 395, 527
SspDI	GGCGCC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	7 cut(s)	86, 173, 297, 408, 409, 483, 529
TaaI	ACNGT	3 cut(s)	16, 283, 421
TaqI	TCGA	2 cut(s)	74, 657
TasI	AATT	3 cut(s)	70, 335, 859
TatI	WGTACW	2 cut(s)	820, 834
TauI	GCSGC	2 cut(s)	103, 379
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	4 cut(s)	577, 642, 657, 704
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	3 cut(s)	245, 389, 527
TspMI	CCCGGG	1 cut(s)	409
TspRI	CASTG	4 cut(s)	577, 642, 657, 704
Van91I	CCANNNNNTGG	1 cut(s)	608
XapI	RAATTY	2 cut(s)	70, 335
XceI	RCATGY	2 cut(s)	622, 648
XmaI	CCCGGG	1 cut(s)	409
XspI	CTAG	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.