Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001741

Physical Location & Seq

Genomic Coordinates Reverse (-)

11248991 .. 11249404

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGACCCCTGCAATTCCTCAGTCGGGACCATCGCTTACATGAGTCCGGAGAGGATCAACACCGATCTCAATCACGGCCAGTACGACGGCTACGCCGGCGATATATGGAGCCTTGGGGTCAGCATATTGGAATTTTACATGGGCCGGTTTCCGTTCTCCGTGGGGCGGCAAGGTGATTGGGCGACCTTAATGTGGGCTATTTGTATGTCTGATCCGCCTGAAGCTCCGGCCACTGCTTCCAGTGAGTTCAGGCATTTCATTTCTTGCTGCCTGCAGAAAGAGCCTTCGAAGAGACTGTCGGCGGCGCACTTGTTGCAGCACCCGTTTATCTCCGGCAATGGTGGCGGTCAGGCCCGGCAGCCTCATCAGAATCTTCGCCATCTGCTGCCGCCACCGAGGCCTCTTTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001932 GO:0001934 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006521 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009626 GO:0009791 GO:0009814 GO:0009838 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010227 GO:0010229 GO:0010364 GO:0010365 GO:0010562 GO:0010565 GO:0010604 GO:0010817 GO:0012501 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0022414 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031335 GO:0031337 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0033238 GO:0033240 GO:0033554 GO:0033674 GO:0034050 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0042762 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045764 GO:0045859 GO:0045860 GO:0045937 GO:0046885 GO:0046886 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051176 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0080090 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1900908 GO:1900910 GO:1900911 GO:1900913 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

138

Amino Acids

15.13

Weight (kDa)

6.57

Isoelectric Point (pI)

70.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 110	1.9e-20	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	10 - 106	2.7e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51660 AT3G21220 AT3G21220
fragaria_vesca	FvH4_4g27851 FvH4_6g37490 FvH4_6g37492
malus_domestica	MD09G1157600.v1.1 MD17G1173100.v1.1
prunus_persica	Prupe.3G168400_v2.0.a1
pyrus_communis	pycom09g07620 pycom17g13670
rosa_chinensis	RchiOBHm_Chr2g0150331 RchiOBHm_Chr2g0150341 RchiOBHm_Chr2g0150351 RchiOBHm_Chr6g0306151
rosa_laevigata	RLG00000016011 RLG00000020488 RLG00000020490 RLG00000020492
rosa_multiflora	Rmu_sc0002179.1_g000003 Rmu_sc0002179.1_g000004 Rmu_sc0002179.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097240 Rroxscaffold_2G00097250 Rroxscaffold_2G00097270
rosa_rugosa	Rorug02G0420500 Rorug02G0420700 Rorug02G0420800 Rorug06G0347200
rosa_samantha	Rh2AG479800 Rh2AG479900 Rh2AG480000 Rh2BG491900 Rh2BG492000 Rh2BG492100 Rh2CG466100 Rh2CG466200 Rh2CG466300 Rh2DG500700 Rh2DG500900 Rh2DG501000 Rh6AG459700 Rh6BG441300 Rh6CG474100 Rh6DG460400
rosa_wichuraiana	Rw2G039150 Rw2G039160 Rw2G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	5 cut(s)	166, 215, 302, 345, 389
AclWI	GGATC	2 cut(s)	62, 206
AcoI	YGGCCR	2 cut(s)	76, 228
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	3 cut(s)	24, 165, 192
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	2 cut(s)	62, 206
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	5 cut(s)	76, 142, 228, 351, 398
ApeKI	GCWGC	4 cut(s)	267, 316, 358, 385
ApoI	RAATTY	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	4 cut(s)	4, 27, 142, 352
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	185
AsuII	TTCGAA	1 cut(s)	287
AvaII	GGWCC	2 cut(s)	4, 27
BbvI	GCAGC	4 cut(s)	254, 328, 370, 372
BccI	CCATC	2 cut(s)	38, 387
BceAI	ACGGC	2 cut(s)	91, 103
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	286
BfmI	CTRYAG	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	397
BisI	GCNGC	7 cut(s)	167, 268, 303, 317, 359, 386, 389
BlsI	GCNGC	7 cut(s)	168, 269, 304, 318, 360, 387, 390
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	2 cut(s)	4, 27
BmgT120I	GGNCC	4 cut(s)	4, 27, 142, 352
BmiI	GGNNCC	3 cut(s)	6, 28, 110
BmrFI	CCNGG	1 cut(s)	355
Bpu14I	TTCGAA	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	112, 159, 395
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 165, 192
Bse118I	RCCGGY	2 cut(s)	95, 144
Bse1I	ACTGG	2 cut(s)	79, 240
Bse3DI	GCAATG	1 cut(s)	343
Bse8I	GATNNNNATC	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	46
BseDI	CCNNGG	3 cut(s)	112, 159, 395
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	3 cut(s)	24, 165, 192
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	79, 240
BseXI	GCAGC	4 cut(s)	254, 328, 370, 372
BshFI	GGCC	5 cut(s)	78, 144, 230, 353, 400
BsiSI	CCGG	6 cut(s)	47, 96, 145, 227, 333, 355
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	24, 165, 192
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	5 cut(s)	78, 144, 230, 353, 400
Bsp119I	TTCGAA	1 cut(s)	287
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	54, 64, 211
BspACI	CCGC	5 cut(s)	166, 215, 302, 345, 389
BspANI	GGCC	5 cut(s)	78, 144, 230, 353, 400
BspCNI	CTCAG	1 cut(s)	32
BspEI	TCCGGA	1 cut(s)	46
BspLI	GGNNCC	3 cut(s)	6, 28, 110
BspMAI	CTGCAG	1 cut(s)	276
BspPI	GGATC	2 cut(s)	62, 206
BspT104I	TTCGAA	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	343
BsrFI	RCCGGY	2 cut(s)	95, 144
BsrI	ACTGG	2 cut(s)	79, 240
BssAI	RCCGGY	2 cut(s)	95, 144
BssECI	CCNNGG	3 cut(s)	112, 159, 395
BssMI	GATC	3 cut(s)	54, 64, 211
BssT1I	CCWWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	97, 272
BstDEI	CTNAG	2 cut(s)	19, 411
BstDSI	CCRYGG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	3 cut(s)	57, 67, 214
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	3 cut(s)	54, 64, 211
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 280, 313, 342, 397
BstSCI	CCNGG	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	4 cut(s)	254, 328, 370, 372
BsuRI	GGCC	5 cut(s)	78, 144, 230, 353, 400
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	231, 247
Cac8I	GCNNGC	2 cut(s)	97, 272
CfoI	GCGC	1 cut(s)	307
Cfr10I	RCCGGY	2 cut(s)	95, 144
Cfr13I	GGNCC	4 cut(s)	4, 27, 142, 352
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	2 cut(s)	40, 139
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	19, 411
DpnI	GATC	3 cut(s)	56, 66, 213
DpnII	GATC	3 cut(s)	54, 64, 211
EaeI	YGGCCR	2 cut(s)	76, 228
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
EciI	GGCGGA	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	112
Eco147I	AGGCCT	1 cut(s)	400
Eco47I	GGWCC	2 cut(s)	4, 27
Eco57I	CTGAAG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	2 cut(s)	43, 142
FaiI	YATR	6 cut(s)	41, 104, 106, 125, 140, 206
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	2 cut(s)	39, 138
Fnu4HI	GCNGC	7 cut(s)	167, 268, 303, 317, 359, 386, 389
Fsp4HI	GCNGC	7 cut(s)	167, 268, 303, 317, 359, 386, 389
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	7 cut(s)	167, 268, 303, 317, 359, 386, 389
HaeIII	GGCC	5 cut(s)	78, 144, 230, 353, 400
HapII	CCGG	6 cut(s)	47, 96, 145, 227, 333, 355
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	2 cut(s)	43, 142
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	2 cut(s)	43, 370
HpaII	CCGG	6 cut(s)	47, 96, 145, 227, 333, 355
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	2 cut(s)	211, 369
Hpy188III	TCNNGA	2 cut(s)	25, 47
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	12, 274, 316
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 280, 313, 342, 397
HpyF3I	CTNAG	2 cut(s)	19, 411
Hsp92II	CATG	2 cut(s)	43, 142
HspAI	GCGC	1 cut(s)	305
Kpn2I	TCCGGA	1 cut(s)	46
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	54, 64, 211
LmnI	GCTCC	2 cut(s)	108, 229
Lsp1109I	GCAGC	4 cut(s)	254, 328, 370, 372
MalI	GATC	3 cut(s)	56, 66, 213
MboI	GATC	3 cut(s)	54, 64, 211
MboII	GAAGA	2 cut(s)	301, 365
MluCI	AATT	2 cut(s)	13, 131
MlyI	GAGTC	1 cut(s)	52
MnlI	CCTC	5 cut(s)	28, 45, 372, 390, 411
MreI	CGCCGGCG	1 cut(s)	95
MroI	TCCGGA	1 cut(s)	46
MroNI	GCCGGC	1 cut(s)	95
MseI	TTAA	1 cut(s)	188
MspI	CCGG	6 cut(s)	47, 96, 145, 227, 333, 355
MspR9I	CCNGG	1 cut(s)	355
MwoI	GCNNNNNNNGC	5 cut(s)	96, 280, 313, 342, 397
NaeI	GCCGGC	1 cut(s)	97
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	54, 64, 211
NgoMIV	GCCGGC	1 cut(s)	95
NlaIII	CATG	2 cut(s)	43, 142
NlaIV	GGNNCC	3 cut(s)	6, 28, 110
NspV	TTCGAA	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	370
PkrI	GCNGC	7 cut(s)	168, 269, 304, 318, 360, 387, 390
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	6, 28, 110
PspPI	GGNCC	4 cut(s)	4, 27, 142, 352
PstI	CTGCAG	1 cut(s)	276
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	7 cut(s)	167, 268, 303, 317, 359, 386, 389
Sau3AI	GATC	3 cut(s)	54, 64, 211
Sau96I	GGNCC	4 cut(s)	4, 27, 142, 352
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	355
SetI	ASST	3 cut(s)	175, 188, 226
SfcI	CTRYAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	287
SgrAI	CRCCGGYG	1 cut(s)	95
SinI	GGWCC	2 cut(s)	4, 27
Sse9I	AATT	2 cut(s)	13, 131
SseBI	AGGCCT	1 cut(s)	400
SsiI	CCGC	5 cut(s)	166, 215, 302, 345, 389
StuI	AGGCCT	1 cut(s)	400
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	287
TasI	AATT	2 cut(s)	13, 131
TauI	GCSGC	3 cut(s)	169, 305, 391
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	2 cut(s)	238, 247
TseI	GCWGC	4 cut(s)	267, 316, 358, 385
TspDTI	ATGAA	2 cut(s)	247, 396
TspGWI	ACGGA	2 cut(s)	141, 148
TspRI	CASTG	2 cut(s)	238, 247
VpaK11BI	GGWCC	2 cut(s)	4, 27
XapI	RAATTY	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.