Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001741

Physical Location & Seq

Genomic Coordinates Forward (+)

3156589 .. 3158776

Gene Structure 2188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016011

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGACCGGATTGGGAGAGGAGCCGGCGGCACGGTCTACAGGGTTATTCACAAGCCGACCGGGCGGCTCTACGCGCTGAAAGTCATCTACTGCAACCACGACGAGTCGGTCCGGCACCAGATTTGCCGCGAGATCCAAATCCTCCATGACGTCGATAACCCTAACGTCGTCAAGTGCCACGATATGTTTGACCACAACGGCGAGATCCAGGTGTTGCTGGAGTTCATGGATGGTGGTTCGTTAGAGGGGAAGCACAAGCCTCTCCGATTTGGCCCGGCAGATCCTCACCCCGAAACAAAGCGAATAAAAAGAATACTGGATGAAATCAATAGCTTGGTTCAACTTGTACAATCAAGAATCGAAGATGAAGACGTCACACAGAAAGGCGTCATCGGGCCCCAGTATGAGTTTCCTGATATTGAGCGGATGGTGCAGATGAGAAAGTATACTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001932 GO:0001934 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006521 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009626 GO:0009791 GO:0009814 GO:0009838 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010227 GO:0010229 GO:0010364 GO:0010365 GO:0010562 GO:0010565 GO:0010604 GO:0010817 GO:0012501 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0022414 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031335 GO:0031337 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0033238 GO:0033240 GO:0033554 GO:0033674 GO:0034050 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0042762 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045764 GO:0045859 GO:0045860 GO:0045937 GO:0046885 GO:0046886 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051176 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0080090 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1900908 GO:1900910 GO:1900911 GO:1900913 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

152

Amino Acids

17.46

Weight (kDa)

6.44

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 82	9.4e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 86	4.3e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51660 AT3G21220 AT3G21220
fragaria_vesca	FvH4_4g27851 FvH4_6g37490 FvH4_6g37492
malus_domestica	MD09G1157600.v1.1 MD17G1173100.v1.1
prunus_persica	Prupe.3G168400_v2.0.a1
pyrus_communis	pycom09g07620 pycom17g13670
rosa_chinensis	RchiOBHm_Chr2g0150331 RchiOBHm_Chr2g0150341 RchiOBHm_Chr2g0150351 RchiOBHm_Chr6g0306151
rosa_laevigata	RLG00000016011 RLG00000020488 RLG00000020490 RLG00000020492
rosa_multiflora	Rmu_sc0002179.1_g000003 Rmu_sc0002179.1_g000004 Rmu_sc0002179.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097240 Rroxscaffold_2G00097250 Rroxscaffold_2G00097270
rosa_rugosa	Rorug02G0420500 Rorug02G0420700 Rorug02G0420800 Rorug06G0347200
rosa_samantha	Rh2AG479800 Rh2AG479900 Rh2AG480000 Rh2BG491900 Rh2BG492000 Rh2BG492100 Rh2CG466100 Rh2CG466200 Rh2CG466300 Rh2DG500700 Rh2DG500900 Rh2DG501000 Rh6AG459700 Rh6BG441300 Rh6CG474100 Rh6DG460400
rosa_wichuraiana	Rw2G039150 Rw2G039160 Rw2G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AatII	GACGTC	2 cut(s)	153, 375
AccB1I	GGYRCC	1 cut(s)	114
AccBSI	CCGCTC	1 cut(s)	424
AccI	GTMKAC	2 cut(s)	36, 446
AccII	CGCG	2 cut(s)	74, 129
AciI	CCGC	4 cut(s)	27, 64, 127, 424
AclWI	GGATC	3 cut(s)	127, 199, 275
AcyI	GRCGYC	3 cut(s)	150, 372, 387
AfaI	GTAC	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
AlwI	GGATC	3 cut(s)	127, 199, 275
AoxI	GGCC	2 cut(s)	271, 395
ApaI	GGGCCC	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	5 cut(s)	4, 109, 272, 395, 396
AsuC2I	CCSGG	2 cut(s)	61, 275
AsuHPI	GGTGA	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	4, 109
BaeGI	GKGCMC	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	375
BccI	CCATC	2 cut(s)	224, 421
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	2 cut(s)	61, 275
BfmI	CTRYAG	1 cut(s)	37
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	28, 65, 127
BlsI	GCNGC	3 cut(s)	29, 66, 128
Bme1390I	CCNGG	3 cut(s)	61, 209, 275
Bme18I	GGWCC	2 cut(s)	4, 109
BmgT120I	GGNCC	5 cut(s)	4, 109, 272, 395, 396
BmiI	GGNNCC	4 cut(s)	22, 116, 397, 398
BmrFI	CCNGG	3 cut(s)	61, 209, 275
BmrI	ACTGGG	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	61, 275
BsaBI	GATNNNNATC	1 cut(s)	137
BsaHI	GRCGYC	3 cut(s)	150, 372, 387
BsaWI	WCCGGW	1 cut(s)	6
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	321, 400
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	209
BseGI	GGATG	3 cut(s)	235, 325, 432
BseJI	GATNNNNATC	1 cut(s)	137
BseNI	ACTGG	2 cut(s)	321, 400
BseRI	GAGGAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	399
BsgI	GTGCAG	1 cut(s)	452
Bsh1236I	CGCG	2 cut(s)	74, 129
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	273, 397
BshNI	GGYRCC	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	5 cut(s)	7, 24, 60, 112, 275
BsnI	GGCC	2 cut(s)	273, 397
Bsp120I	GGGCCC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp1407I	TGTACA	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	132, 204, 280
BspACI	CCGC	4 cut(s)	27, 64, 127, 424
BspANI	GGCC	2 cut(s)	273, 397
BspFNI	CGCG	2 cut(s)	74, 129
BspLI	GGNNCC	4 cut(s)	22, 116, 397, 398
BspPI	GGATC	3 cut(s)	127, 199, 275
BspT107I	GGYRCC	1 cut(s)	114
BsrBI	CCGCTC	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	346
BsrI	ACTGG	2 cut(s)	321, 400
BssAI	RCCGGY	1 cut(s)	23
BssMI	GATC	3 cut(s)	132, 204, 280
BssNAI	GTATAC	1 cut(s)	447
BssNI	GRCGYC	3 cut(s)	150, 372, 387
Bst1107I	GTATAC	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	34
BstACI	GRCGYC	3 cut(s)	150, 372, 387
BstAUI	TGTACA	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	3 cut(s)	235, 325, 432
BstFNI	CGCG	2 cut(s)	74, 129
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	3 cut(s)	135, 207, 283
BstMBI	GATC	3 cut(s)	132, 204, 280
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 73, 430
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	3 cut(s)	59, 207, 273
BstSFI	CTRYAG	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	399
BstUI	CGCG	2 cut(s)	74, 129
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	3 cut(s)	132, 204, 280
BstYI	RGATCY	3 cut(s)	132, 204, 280
BstZ17I	GTATAC	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	273, 397
BtsCI	GGATG	3 cut(s)	235, 325, 432
Cac8I	GCNNGC	1 cut(s)	25
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	5 cut(s)	4, 109, 272, 395, 396
CpoI	CGGWCCG	1 cut(s)	109
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	347
CspI	CGGWCCG	1 cut(s)	109
CviAII	CATG	2 cut(s)	146, 226
CviJI	RGCY	7 cut(s)	23, 55, 67, 259, 273, 333, 397
CviKI_1	RGCY	7 cut(s)	23, 55, 67, 259, 273, 333, 397
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	3 cut(s)	134, 206, 282
DpnII	GATC	3 cut(s)	132, 204, 280
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	399
Eco47I	GGWCC	2 cut(s)	4, 109
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	399
FaeI	CATG	2 cut(s)	149, 229
FaiI	YATR	5 cut(s)	147, 185, 227, 405, 447
FatI	CATG	2 cut(s)	145, 225
FblI	GTMKAC	2 cut(s)	36, 446
Fnu4HI	GCNGC	3 cut(s)	28, 65, 127
FokI	GGATG	3 cut(s)	242, 332, 439
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	3 cut(s)	28, 65, 127
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	3 cut(s)	28, 65, 127
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	273, 397
HapII	CCGG	5 cut(s)	7, 24, 60, 112, 275
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	3 cut(s)	150, 372, 387
Hin1II	CATG	2 cut(s)	149, 229
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	2 cut(s)	104, 357
HpaII	CCGG	5 cut(s)	7, 24, 60, 112, 275
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	37, 447
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	2 cut(s)	354, 413
Hpy8I	GTNNAC	2 cut(s)	37, 447
Hpy99I	CGWCG	3 cut(s)	104, 155, 170
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	3 cut(s)	150, 165, 372
HpyCH4V	TGCA	2 cut(s)	93, 433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 73, 430
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	3 cut(s)	150, 165, 372
Hsp92I	GRCGYC	3 cut(s)	150, 372, 387
Hsp92II	CATG	2 cut(s)	149, 229
HspAI	GCGC	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	132, 204, 280
LmnI	GCTCC	1 cut(s)	20
MaeII	ACGT	3 cut(s)	150, 165, 372
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	134, 206, 282
MbiI	CCGCTC	1 cut(s)	424
MboI	GATC	3 cut(s)	132, 204, 280
MboII	GAAGA	2 cut(s)	374, 380
MflI	RGATCY	3 cut(s)	132, 204, 280
MhlI	GDGCHC	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	5 cut(s)	11, 152, 238, 270, 294
MroNI	GCCGGC	1 cut(s)	23
MspI	CCGG	5 cut(s)	7, 24, 60, 112, 275
MspR9I	CCNGG	3 cut(s)	61, 209, 275
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	2 cut(s)	74, 129
MwoI	GCNNNNNNNGC	3 cut(s)	61, 73, 430
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	2 cut(s)	61, 275
NdeII	GATC	3 cut(s)	132, 204, 280
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	149, 229
NlaIV	GGNNCC	4 cut(s)	22, 116, 397, 398
NmuCI	GTSAC	1 cut(s)	373
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	357
PkrI	GCNGC	3 cut(s)	29, 66, 128
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	4 cut(s)	22, 116, 397, 398
PspOMI	GGGCCC	1 cut(s)	395
PspPI	GGNCC	5 cut(s)	4, 109, 272, 395, 396
PsuI	RGATCY	3 cut(s)	132, 204, 280
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
Rsr2I	CGGWCCG	1 cut(s)	109
RsrII	CGGWCCG	1 cut(s)	109
SatI	GCNGC	3 cut(s)	28, 65, 127
Sau3AI	GATC	3 cut(s)	132, 204, 280
Sau96I	GGNCC	5 cut(s)	4, 109, 272, 395, 396
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	3 cut(s)	61, 209, 275
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	5 cut(s)	153, 168, 213, 335, 375
SfcI	CTRYAG	1 cut(s)	37
SinI	GGWCC	2 cut(s)	4, 109
SsiI	CCGC	4 cut(s)	27, 64, 127, 424
StyD4I	CCNGG	3 cut(s)	59, 207, 273
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	3 cut(s)	153, 168, 375
TaqI	TCGA	2 cut(s)	153, 360
TaqII	GACCGA	1 cut(s)	97
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	3 cut(s)	30, 67, 129
TfiI	GAWTC	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	373
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	3 cut(s)	214, 336, 381
VpaK11BI	GGWCC	2 cut(s)	4, 109
XmiI	GTMKAC	2 cut(s)	36, 446
ZraI	GACGTC	2 cut(s)	151, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.