Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001741

Physical Location & Seq

Genomic Coordinates Reverse (-)

64258236 .. 64258655

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG459700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCTGCCGTTGCCTGGAGGTGTGGCCGCCATAAAGGACCTGTCGGGGAAGTCACGGCGTCGTCCTGACCTCAGTCTACCGATGTCGAGGCGGGACACGTCTCTGGCAGTGCCGTTGGGGCTGAGCTCGACTCCGTCCCGGTCCGAGGCCTTGATGATCAACTTCTCCGAGCTGGAGCAAGCGAACCGGATTGGGAGCAAAGCCGGCGACACAATCTACAAGGTTATTCACAAACCGACCGGGTGGCTCTACGCCGTGAAAGTCATCTACGGCAACCACGATGAGTCTGTCCGGCACCAAATCTGCCATGAGATCCAAATCCTCCACGATGTCAATAATCCTAACGTCGTCAAGTGCCACGATATGTTTGACCACAAAGGCGAGATCCAGGTGCTGCTGGAGTTCATGGATGGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001932 GO:0001934 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006521 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009626 GO:0009791 GO:0009814 GO:0009838 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010227 GO:0010229 GO:0010364 GO:0010365 GO:0010562 GO:0010565 GO:0010604 GO:0010817 GO:0012501 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0022414 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031335 GO:0031337 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0033238 GO:0033240 GO:0033554 GO:0033674 GO:0034050 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0042762 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045764 GO:0045859 GO:0045860 GO:0045937 GO:0046885 GO:0046886 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051176 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0080090 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1900908 GO:1900910 GO:1900911 GO:1900913 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

139

Amino Acids

15.43

Weight (kDa)

7.06

Isoelectric Point (pI)

57.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	60 - 139	5.9e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	79 - 139	5.1e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51660 AT3G21220 AT3G21220
fragaria_vesca	FvH4_4g27851 FvH4_6g37490 FvH4_6g37492
malus_domestica	MD09G1157600.v1.1 MD17G1173100.v1.1
prunus_persica	Prupe.3G168400_v2.0.a1
pyrus_communis	pycom09g07620 pycom17g13670
rosa_chinensis	RchiOBHm_Chr2g0150331 RchiOBHm_Chr2g0150341 RchiOBHm_Chr2g0150351 RchiOBHm_Chr6g0306151
rosa_laevigata	RLG00000016011 RLG00000020488 RLG00000020490 RLG00000020492
rosa_multiflora	Rmu_sc0002179.1_g000003 Rmu_sc0002179.1_g000004 Rmu_sc0002179.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097240 Rroxscaffold_2G00097250 Rroxscaffold_2G00097270
rosa_rugosa	Rorug02G0420500 Rorug02G0420700 Rorug02G0420800 Rorug06G0347200
rosa_samantha	Rh2AG479800 Rh2AG479900 Rh2AG480000 Rh2BG491900 Rh2BG492000 Rh2BG492100 Rh2CG466100 Rh2CG466200 Rh2CG466300 Rh2DG500700 Rh2DG500900 Rh2DG501000 Rh6AG459700 Rh6BG441300 Rh6CG474100 Rh6DG460400
rosa_wichuraiana	Rw2G039150 Rw2G039160 Rw2G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	2 cut(s)	27, 91
AclWI	GGATC	2 cut(s)	307, 379
AcoI	YGGCCR	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	14, 145
AflIII	ACRYGT	1 cut(s)	96
AjiI	CACGTC	1 cut(s)	99
AjnI	CCWGG	2 cut(s)	13, 387
AluBI	AGCT	2 cut(s)	126, 172
AluI	AGCT	2 cut(s)	126, 172
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	307, 379
AlwNI	CAGNNNCTG	1 cut(s)	394
AoxI	GGCC	2 cut(s)	24, 147
ApeKI	GCWGC	2 cut(s)	4, 394
AspS9I	GGNCC	2 cut(s)	37, 141
AsuC2I	CCSGG	2 cut(s)	139, 241
AvaII	GGWCC	2 cut(s)	37, 141
BanI	GGYRCC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	381
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	4 cut(s)	71, 97, 239, 286
BciT130I	CCWGG	2 cut(s)	15, 389
BclI	TGATCA	1 cut(s)	156
BcnI	CCSGG	2 cut(s)	139, 241
BcoDI	GTCTC	1 cut(s)	105
BglI	GCCNNNNNGGC	1 cut(s)	118
BisI	GCNGC	3 cut(s)	5, 27, 395
BlpI	GCTNAGC	1 cut(s)	122
BlsI	GCNGC	3 cut(s)	6, 28, 396
Bme1390I	CCNGG	4 cut(s)	15, 139, 241, 389
Bme18I	GGWCC	2 cut(s)	37, 141
BmgBI	CACGTC	1 cut(s)	99
BmgT120I	GGNCC	2 cut(s)	37, 141
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	4 cut(s)	15, 139, 241, 389
BoxI	GACNNNNGTC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BpmI	CTGGAG	3 cut(s)	36, 194, 419
Bpu1102I	GCTNAGC	1 cut(s)	122
BpuMI	CCSGG	2 cut(s)	139, 241
BsaBI	GATNNNNATC	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 145
Bse118I	RCCGGY	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	15, 389
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	415
BseJI	GATNNNNATC	1 cut(s)	317
BseLI	CCNNNNNNNGG	2 cut(s)	14, 145
BseMII	CTCAG	2 cut(s)	85, 113
BseXI	GCAGC	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	2 cut(s)	26, 149
BshNI	GGYRCC	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	5 cut(s)	139, 187, 204, 240, 292
BslFI	GGGAC	2 cut(s)	107, 121
BslI	CCNNNNNNNGG	2 cut(s)	14, 145
BsmAI	GTCTC	1 cut(s)	105
BsmBI	CGTCTC	1 cut(s)	105
BsmFI	GGGAC	2 cut(s)	107, 121
BsnI	GGCC	2 cut(s)	26, 149
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	156, 312, 384
Bsp1720I	GCTNAGC	1 cut(s)	122
BspACI	CCGC	2 cut(s)	27, 91
BspANI	GGCC	2 cut(s)	26, 149
BspCNI	CTCAG	2 cut(s)	84, 114
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	2 cut(s)	307, 379
BspT107I	GGYRCC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	156, 312, 384
BssNI	GRCGYC	1 cut(s)	58
Bst2UI	CCWGG	2 cut(s)	15, 389
BstACI	GRCGYC	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	180, 205
BstDEI	CTNAG	2 cut(s)	71, 122
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	3 cut(s)	159, 315, 387
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	3 cut(s)	156, 312, 384
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 118, 204
BstNI	CCWGG	2 cut(s)	15, 389
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSCI	CCNGG	4 cut(s)	13, 137, 239, 387
BstV1I	GCAGC	1 cut(s)	381
BstX2I	RGATCY	2 cut(s)	312, 384
BstYI	RGATCY	2 cut(s)	312, 384
BsuRI	GGCC	2 cut(s)	26, 149
BtrI	CACGTC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	180, 205
CaiI	CAGNNNCTG	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	37, 141
CpoI	CGGWCCG	1 cut(s)	141
CseI	GACGC	1 cut(s)	47
CspI	CGGWCCG	1 cut(s)	141
CviAII	CATG	2 cut(s)	308, 406
CviJI	RGCY	7 cut(s)	26, 121, 126, 149, 172, 203, 247
CviKI_1	RGCY	7 cut(s)	26, 121, 126, 149, 172, 203, 247
DdeI	CTNAG	2 cut(s)	71, 122
DpnI	GATC	3 cut(s)	158, 314, 386
DpnII	GATC	3 cut(s)	156, 312, 384
EaeI	YGGCCR	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	126
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	37, 141
Eco53kI	GAGCTC	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	13, 387
EcoT38I	GRGCYC	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	2 cut(s)	311, 409
FaiI	YATR	4 cut(s)	32, 309, 365, 407
FaqI	GGGAC	2 cut(s)	107, 121
FatI	CATG	2 cut(s)	307, 405
FauI	CCCGC	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	5, 27, 395
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	3 cut(s)	5, 27, 395
GluI	GCNGC	3 cut(s)	5, 27, 395
GsuI	CTGGAG	3 cut(s)	36, 194, 419
HaeIII	GGCC	2 cut(s)	26, 149
HapII	CCGG	5 cut(s)	139, 187, 204, 240, 292
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	311, 409
HinfI	GANTC	2 cut(s)	130, 284
HpaII	CCGG	5 cut(s)	139, 187, 204, 240, 292
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	2 cut(s)	145, 169
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	2 cut(s)	63, 350
HpyCH4IV	ACGT	2 cut(s)	98, 345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 118, 204
HpyF3I	CTNAG	2 cut(s)	71, 122
HpySE526I	ACGT	2 cut(s)	98, 345
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	311, 409
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	156, 312, 384
LmnI	GCTCC	2 cut(s)	175, 195
Lsp1109I	GCAGC	1 cut(s)	381
MaeII	ACGT	2 cut(s)	98, 345
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	3 cut(s)	158, 314, 386
MboI	GATC	3 cut(s)	156, 312, 384
MflI	RGATCY	2 cut(s)	312, 384
MhlI	GDGCHC	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	124, 293
MnlI	CCTC	5 cut(s)	11, 80, 81, 139, 332
MroNI	GCCGGC	1 cut(s)	203
MspI	CCGG	5 cut(s)	139, 187, 204, 240, 292
MspR9I	CCNGG	4 cut(s)	15, 139, 241, 389
MvaI	CCWGG	2 cut(s)	15, 389
MwoI	GCNNNNNNNGC	3 cut(s)	10, 118, 204
NaeI	GCCGGC	1 cut(s)	205
NciI	CCSGG	2 cut(s)	139, 241
NdeII	GATC	3 cut(s)	156, 312, 384
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	2 cut(s)	311, 409
NlaIV	GGNNCC	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PdiI	GCCGGC	1 cut(s)	205
PflFI	GACNNNGTC	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	6, 28, 396
PleI	GAGTC	2 cut(s)	124, 292
PpsI	GAGTC	2 cut(s)	124, 292
PpuMI	RGGWCCY	1 cut(s)	37
PshAI	GACNNNNGTC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	13, 387
PspGI	CCWGG	2 cut(s)	13, 387
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	2 cut(s)	37, 141
PspPPI	RGGWCCY	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	312, 384
PsyI	GACNNNGTC	1 cut(s)	133
Rsr2I	CGGWCCG	1 cut(s)	141
RsrII	CGGWCCG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	128
SatI	GCNGC	3 cut(s)	5, 27, 395
Sau3AI	GATC	3 cut(s)	156, 312, 384
Sau96I	GGNCC	2 cut(s)	37, 141
SchI	GAGTC	2 cut(s)	124, 293
ScrFI	CCNGG	4 cut(s)	15, 139, 241, 389
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	9 cut(s)	22, 42, 72, 101, 128, 174, 225, 348, 393
SinI	GGWCC	2 cut(s)	37, 141
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	27, 91
SstI	GAGCTC	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	4 cut(s)	13, 137, 239, 387
TaiI	ACGT	2 cut(s)	101, 348
TaqI	TCGA	2 cut(s)	86, 128
TauI	GCSGC	1 cut(s)	29
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	2 cut(s)	4, 394
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	394
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	114
Tth111I	GACNNNGTC	1 cut(s)	133
VpaK11BI	GGWCC	2 cut(s)	37, 141
XmiI	GTMKAC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.