Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001741

Physical Location & Seq

Genomic Coordinates Reverse (-)

62976224 .. 62976730

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG460400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGTCAGATGCCGCCGCCGCCGGGAGGTGTGTCCGCCATAAAGGACCCGTCGGGGAAGTCACGACGTCATCCTGACCTCAGTCTACCGATGTTGAGGTGCGACACGTCTCTCGCAGTGCCGTTGCCTCTGCCGCCGGGGCCGAGCTCAACTCCGTCTGGGTCCGAGGCCGTGATGATCAACTTCTCCGATCTGGAGAGGGCGAACCGGATTGGGAGCGGAACTGGCGACACGGTCTACAGGGTTATTCACAAACCGACCGGGCGGCTCTATGCGCTGAAAGTCATCTACGGCAACCACGACGAGTCTGTCTGGCACCAAATCTGCCGCGAGATCCAAATCCTCCGTGACGTTGATAATCCTAACGTCGTCAAGTGCCACGATATGTTTGACCACAAAGGCGAGATCCAGGTGTTGTTGGAGTTCATGGACGGTGGTTCGTTAGAAGGGAAGCACATCGCCTCTCCGATTTGGCCCGATAGATCCTCAACTAAACAAAGCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001932 GO:0001934 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006521 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009626 GO:0009791 GO:0009814 GO:0009838 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010227 GO:0010229 GO:0010364 GO:0010365 GO:0010562 GO:0010565 GO:0010604 GO:0010817 GO:0012501 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0022414 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031335 GO:0031337 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0033238 GO:0033240 GO:0033554 GO:0033674 GO:0034050 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0042762 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045764 GO:0045859 GO:0045860 GO:0045937 GO:0046885 GO:0046886 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051176 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0080090 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1900908 GO:1900910 GO:1900911 GO:1900913 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

168

Amino Acids

18.45

Weight (kDa)

6.37

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	67 - 149	2.8e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	67 - 149	2.7e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51660 AT3G21220 AT3G21220
fragaria_vesca	FvH4_4g27851 FvH4_6g37490 FvH4_6g37492
malus_domestica	MD09G1157600.v1.1 MD17G1173100.v1.1
prunus_persica	Prupe.3G168400_v2.0.a1
pyrus_communis	pycom09g07620 pycom17g13670
rosa_chinensis	RchiOBHm_Chr2g0150331 RchiOBHm_Chr2g0150341 RchiOBHm_Chr2g0150351 RchiOBHm_Chr6g0306151
rosa_laevigata	RLG00000016011 RLG00000020488 RLG00000020490 RLG00000020492
rosa_multiflora	Rmu_sc0002179.1_g000003 Rmu_sc0002179.1_g000004 Rmu_sc0002179.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097240 Rroxscaffold_2G00097250 Rroxscaffold_2G00097270
rosa_rugosa	Rorug02G0420500 Rorug02G0420700 Rorug02G0420800 Rorug06G0347200
rosa_samantha	Rh2AG479800 Rh2AG479900 Rh2AG480000 Rh2BG491900 Rh2BG492000 Rh2BG492100 Rh2CG466100 Rh2CG466200 Rh2CG466300 Rh2DG500700 Rh2DG500900 Rh2DG501000 Rh6AG459700 Rh6BG441300 Rh6CG474100 Rh6DG460400
rosa_wichuraiana	Rw2G039150 Rw2G039160 Rw2G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
AatII	GACGTC	1 cut(s)	70
AccB1I	GGYRCC	1 cut(s)	315
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	2 cut(s)	85, 237
AccII	CGCG	1 cut(s)	330
AciI	CCGC	8 cut(s)	14, 17, 20, 36, 134, 219, 265, 328
AclWI	GGATC	3 cut(s)	328, 400, 477
AcyI	GRCGYC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	23, 26
AflIII	ACRYGT	1 cut(s)	105
AjiI	CACGTC	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	3 cut(s)	328, 400, 477
AoxI	GGCC	3 cut(s)	140, 168, 473
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	4 cut(s)	46, 140, 162, 474
AsuC2I	CCSGG	3 cut(s)	24, 138, 262
AvaII	GGWCC	2 cut(s)	46, 162
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	149
BceAI	ACGGC	3 cut(s)	106, 155, 307
BciT130I	CCWGG	1 cut(s)	410
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	3 cut(s)	24, 138, 262
BcoDI	GTCTC	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	139
BisI	GCNGC	6 cut(s)	14, 17, 20, 134, 266, 328
BlsI	GCNGC	6 cut(s)	15, 18, 21, 135, 267, 329
Bme1390I	CCNGG	4 cut(s)	24, 138, 262, 410
Bme18I	GGWCC	2 cut(s)	46, 162
BmgBI	CACGTC	1 cut(s)	108
BmgT120I	GGNCC	4 cut(s)	46, 140, 162, 474
BmiI	GGNNCC	4 cut(s)	48, 141, 163, 317
BmrFI	CCNGG	4 cut(s)	24, 138, 262, 410
BoxI	GACNNNNGTC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BpmI	CTGGAG	1 cut(s)	215
BpuMI	CCSGG	3 cut(s)	24, 138, 262
BsaBI	GATNNNNATC	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	137, 165
BsaWI	WCCGGW	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 26
Bse1I	ACTGG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	137, 165
BseGI	GGATG	1 cut(s)	70
BseJI	GATNNNNATC	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	23, 26
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	330
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	142, 170, 475
BshNI	GGYRCC	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	4 cut(s)	23, 137, 208, 261
BslI	CCNNNNNNNGG	2 cut(s)	23, 26
BsmAI	GTCTC	1 cut(s)	114
BsmBI	CGTCTC	1 cut(s)	114
BsnI	GGCC	3 cut(s)	142, 170, 475
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	5 cut(s)	177, 190, 333, 405, 482
BspACI	CCGC	8 cut(s)	14, 17, 20, 36, 134, 219, 265, 328
BspANI	GGCC	3 cut(s)	142, 170, 475
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	4 cut(s)	48, 141, 163, 317
BspPI	GGATC	3 cut(s)	328, 400, 477
BspT107I	GGYRCC	1 cut(s)	315
BsrBI	CCGCTC	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	137, 165
BssMI	GATC	5 cut(s)	177, 190, 333, 405, 482
BssNI	GRCGYC	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	235, 434
BstACI	GRCGYC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	5 cut(s)	180, 193, 336, 408, 485
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	5 cut(s)	177, 190, 333, 405, 482
BstMCI	CGRYCG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 133, 139, 225, 274
BstNI	CCWGG	1 cut(s)	410
BstPAI	GACNNNNGTC	1 cut(s)	81
BstSCI	CCNGG	4 cut(s)	22, 136, 260, 408
BstSFI	CTRYAG	1 cut(s)	238
BstUI	CGCG	1 cut(s)	330
BstX2I	RGATCY	3 cut(s)	333, 405, 482
BstYI	RGATCY	3 cut(s)	333, 405, 482
BsuRI	GGCC	3 cut(s)	142, 170, 475
BtgZI	GCGATG	1 cut(s)	442
BtrI	CACGTC	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	4 cut(s)	46, 140, 162, 474
CviAII	CATG	1 cut(s)	427
CviJI	RGCY	5 cut(s)	142, 147, 170, 268, 475
CviKI_1	RGCY	5 cut(s)	142, 147, 170, 268, 475
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	5 cut(s)	179, 192, 335, 407, 484
DpnII	GATC	5 cut(s)	177, 190, 333, 405, 482
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
EciI	GGCGGA	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	2 cut(s)	46, 162
Eco53kI	GAGCTC	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	1 cut(s)	430
FaiI	YATR	4 cut(s)	41, 273, 386, 428
FatI	CATG	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	2 cut(s)	85, 237
Fnu4HI	GCNGC	6 cut(s)	14, 17, 20, 134, 266, 328
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	6 cut(s)	14, 17, 20, 134, 266, 328
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	6 cut(s)	14, 17, 20, 134, 266, 328
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	3 cut(s)	142, 170, 475
HapII	CCGG	4 cut(s)	23, 137, 208, 261
HhaI	GCGC	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	430
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	2 cut(s)	4, 305
HpaII	CCGG	4 cut(s)	23, 137, 208, 261
Hpy166II	GTNNAC	2 cut(s)	86, 238
Hpy188I	TCNGA	4 cut(s)	9, 166, 190, 468
Hpy188III	TCNNGA	3 cut(s)	63, 74, 194
Hpy8I	GTNNAC	2 cut(s)	86, 238
Hpy99I	CGWCG	4 cut(s)	55, 69, 305, 371
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	2 cut(s)	235, 434
HpyCH4IV	ACGT	4 cut(s)	67, 107, 351, 366
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 133, 139, 225, 274
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	4 cut(s)	67, 107, 351, 366
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	430
HspAI	GCGC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	177, 190, 333, 405, 482
LmnI	GCTCC	1 cut(s)	216
MaeII	ACGT	4 cut(s)	67, 107, 351, 366
MaeIII	GTNAC	2 cut(s)	60, 347
MalI	GATC	5 cut(s)	179, 192, 335, 407, 484
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	5 cut(s)	177, 190, 333, 405, 482
MflI	RGATCY	3 cut(s)	333, 405, 482
MhlI	GDGCHC	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	13, 314
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	9 cut(s)	20, 89, 90, 138, 160, 192, 353, 472, 496
MspI	CCGG	4 cut(s)	23, 137, 208, 261
MspR9I	CCNGG	4 cut(s)	24, 138, 262, 410
MvaI	CCWGG	1 cut(s)	410
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	5 cut(s)	19, 133, 139, 225, 274
NciI	CCSGG	3 cut(s)	24, 138, 262
NdeII	GATC	5 cut(s)	177, 190, 333, 405, 482
NlaIII	CATG	1 cut(s)	430
NlaIV	GGNNCC	4 cut(s)	48, 141, 163, 317
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	2 cut(s)	60, 347
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	6 cut(s)	15, 18, 21, 135, 267, 329
PleI	GAGTC	2 cut(s)	12, 313
PpsI	GAGTC	2 cut(s)	12, 313
PpuMI	RGGWCCY	1 cut(s)	46
PshAI	GACNNNNGTC	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	4 cut(s)	48, 141, 163, 317
PspPI	GGNCC	4 cut(s)	46, 140, 162, 474
PspPPI	RGGWCCY	1 cut(s)	46
PsuI	RGATCY	3 cut(s)	333, 405, 482
PsyI	GACNNNGTC	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	149
SatI	GCNGC	6 cut(s)	14, 17, 20, 134, 266, 328
Sau3AI	GATC	5 cut(s)	177, 190, 333, 405, 482
Sau96I	GGNCC	4 cut(s)	46, 140, 162, 474
SchI	GAGTC	2 cut(s)	13, 314
ScrFI	CCNGG	4 cut(s)	24, 138, 262, 410
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	9 cut(s)	31, 70, 81, 101, 110, 149, 354, 369, 414
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	2 cut(s)	46, 162
SsiI	CCGC	8 cut(s)	14, 17, 20, 36, 134, 219, 265, 328
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	4 cut(s)	22, 136, 260, 408
TaaI	ACNGT	2 cut(s)	235, 434
TaiI	ACGT	4 cut(s)	70, 110, 354, 369
TauI	GCSGC	6 cut(s)	16, 19, 22, 136, 268, 330
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	2 cut(s)	60, 347
Tsp45I	GTSAC	2 cut(s)	60, 347
TspDTI	ATGAA	1 cut(s)	415
TspGWI	ACGGA	2 cut(s)	144, 335
TspRI	CASTG	1 cut(s)	123
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	2 cut(s)	46, 162
XmiI	GTMKAC	2 cut(s)	85, 237
ZraI	GACGTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.